| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_pgi | 4,235,461 | 0 | A | C | 26.3% | 133.8 / 70.8 | 118 | intergenic (‑2228/‑473) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein |
| Reads supporting (aligned to +/- strand): ref base A (44/43); new base C (5/26); total (49/69) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.21e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.19e-02 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 122 total aligned reads displayed.
AGCAGCTGGCTAAGAAAATAGAGCCTGAGCTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAATAAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTA > NC_000913_3_hsa_pgi/4235313‑4235610 | tgaatcTGTCTAAGAAAATAGTGCTTGAGTTTTATGGCAGTGATCAAGTGACCTCTCACGACGCTTCTACCAATGGGATAATCAACTTAATAAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑ATTCATCGTCGATATGTTGGCCGTATAAgg < 2:1365275/145‑1 (MQ=255) gctgcTGGCTAAGAAAATAGAGCCTGAGGGTGATGGCAGTGCTAAAGTGACCTCTCACGACTCTTCTACCAATGGGCGCATCATCTTCATCAAGCAGCAGCGCGAGGCCAGAGGCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGc < 1:1239538/147‑1 (MQ=255) aaGAAAATATAGACTGAGATTGATGTCAGTGCTCAAGTGACCTCTCAGGACTCTTCTACCAATTGGCTCATCAAATTCATCAATCAGCATCGCGAGTACAGAGTCCAAT‑AATCATCGTAGATATGTAGGCCTGATAAGGCGTTCAcgccg < 2:1263425/150‑1 (MQ=255) aaaTAGCGCCTGAGCGTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATGCGGCGTGAAcgccttatc < 2:228687/150‑6 (MQ=255) aaaTAGAGCCTGAGCTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATGCGGCGTGAAcgccttatc < 1:1479693/150‑6 (MQ=255) aaaTAGAGCCTGAGCTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATGCGGCGTGAAcgccttatc < 1:1136482/150‑6 (MQ=255) aaaTAGAGCCTGAGCTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATGCGGCGTGAAcgccttatc < 2:733604/150‑6 (MQ=255) aaaGAGAGCCTGAGCTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTGCTACCAATGGGCTCATCAACTTCATCACGCAGCCGCGCGAGGCCAGAGGCCAAT‑AATCATCGTCGATATGTAGGCCGGATGCGGCGTGAAcgccttatc < 1:120880/150‑6 (MQ=255) aaTAGAGCCTGAGCTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCACCGCGAGGCCAGAGTCCAAT‑ACTCCTCGTCGATATGTACGCCGGATACGGCGTGCCCGCCGCCTcc > 2:1246182/1‑150 (MQ=255) aaTAGAGCCTGAGCTTGATGGCAGTGCTAAAGTGCCCTCTAACGACGATTCTAACAATGGGCTCATCAAATTCATCAAGCAGCAGCTCGAAGCCAGAGTCCAAT‑AATCATAGTCGTTATGTTAGCCGGATAAGGCGTACACGCAGCATca > 2:1431896/1‑149 (MQ=255) aTAGAGCCTGAGCTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATGCGGCGTGAACGCCTTATCCg < 1:859863/150‑1 (MQ=255) aTAGAGCCTGAGCTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATGCGGCGTGAACGCCTTATCCg < 1:75476/150‑1 (MQ=255) agagCCTGCGCTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCACCTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGCTAAGGCGTGCACGCCGCATCCGGc > 1:1443493/1‑150 (MQ=255) agagCCTGAGCTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGc < 1:1203050/150‑1 (MQ=255) gagCCTGAGCTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGcc < 2:1396932/150‑2 (MQ=255) gagCCTGAGCTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGcc < 1:1219836/150‑2 (MQ=255) gagCCTGAGCTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGcc < 1:1133119/150‑2 (MQ=255) gagCCTGAGCTTGATGGCAGTGATCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATTTGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGcc < 2:1233671/150‑2 (MQ=255) cgCCTGAGCTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGcct < 1:98684/149‑3 (MQ=255) agCCTGAGCTTTATGTCAGTGCTCAAGTGACCGCTCACGAAGCTTATACGAATGGGCACATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATAAGTAGCCCGGATGCGGCGAGAACGCCTTATCCGGcct < 1:1084448/150‑3 (MQ=255) agCCTGAGCTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATCGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGcct < 1:1270098/150‑3 (MQ=255) ccTGAGCTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAAAGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGcctac < 1:1013755/150‑5 (MQ=255) ctcaGCTTGCGGGCAGTGCTCAAGCGACCTCTCACGACGCGTCTCCCCATGGGCTCAGCAACATCATCAACCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGAAATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑T‑‑‑‑‑‑Cg < 1:496295/147‑1 (MQ=37) cTGAGCTTGATGGCAGTGCTCAAGTGACCTCTCTCGACGCTTCTACCAATGGGCTCTTCAACGTCATCAAGCAGCAGCGCGAGGCCAGAGTACAA‑AAATCATCGTCGATATGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGC‑CA‑‑‑‑‑‑C‑‑‑‑‑‑Cg > 2:1314638/1‑150 (MQ=255) cTGAGCTTGATGCCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATCGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGcctaca < 1:911023/150‑6 (MQ=255) tGAGGTTGATGGATGGGCTCAATTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGa < 2:724936/150‑1 (MQ=39) tGAGCTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAA‑AAATCAGCGTCGATATGTAGTCCGGATAAGGCGTTCACGCCGCATCCGGC‑aatctt > 1:1017049/1‑146 (MQ=39) gAGCTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGCGGCCAGAGTCCAAT‑AATCATCGTCGTTATGTAGTCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑A‑‑‑‑‑‑Cggg > 2:1137700/1‑148 (MQ=39) aggttGATGTCTGTGCTAAAGTGACCTCTCACGACGCTTCTACAAATGGGCTCATCAACTTCATCAAGCAGCATCGCGAGGCCAGAGTCGAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGAGTTCACGCCGCATACGGC‑AA‑‑‑‑‑‑T‑‑‑‑‑‑CGGTg < 2:1104500/147‑1 (MQ=255) cTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGcc < 1:170939/150‑1 (MQ=255) cTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGcc > 1:424624/1‑150 (MQ=255) ggCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACATCTTAAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑TATCATAGTCGATATGTAGGACGGATAAGGCCTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑T‑‑‑‑‑‑CGCTGcacgcagc > 1:801819/1‑143 (MQ=37) aGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑T‑‑‑‑‑‑CGGTGCACGATGcccg < 2:473170/150‑4 (MQ=37) gTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGAcg > 1:385833/1‑150 (MQ=255) gTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTACATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCAACCTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCTGC‑AC‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGAcg > 2:11442/1‑150 (MQ=38) cTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCTTCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATTCGACGCgg < 1:442885/150‑1 (MQ=255) cTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGG‑AA‑‑‑‑‑‑T‑‑‑‑‑‑CGGTGCAGGATGccggatgc > 2:810975/1‑143 (MQ=37) cTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATTCCTGATGCGACGCgg > 1:1437815/1‑150 (MQ=255) cAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTc > 1:689792/1‑150 (MQ=255) aaGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTcg < 2:1323464/150‑1 (MQ=255) gTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AAGCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTcgcg < 1:865702/150‑1 (MQ=255) gACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGAAGCGCGAGGCCAGAGTCCAAT‑AATCATCCTCGATATGTAGGCCGGATACGGCGTTCACGCCGCATCCGGC‑TA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACTCGGTCGCGTc < 2:1145931/150‑1 (MQ=39) ccTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCACAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑A‑‑‑‑‑‑CGAAGCCTGATGCGACGCGGTCGCGTCtt > 1:631055/1‑150 (MQ=255) ctctCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTa > 2:924104/1‑150 (MQ=255) ctcACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATc < 1:318194/150‑1 (MQ=255) ctcACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATc < 1:924104/150‑1 (MQ=255) tcACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCa > 1:663867/1‑150 (MQ=255) cACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGACTTATCAg > 1:537953/1‑150 (MQ=255) gacgCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGcc < 1:581704/150‑1 (MQ=255) acgATTCTACCACTGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCTGAGGCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCTCGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCt < 1:1000443/150‑1 (MQ=25) cTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGCGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AATCGGTGCA‑‑‑‑‑CGATGCCTGATGCGACGCTGGCGCGTCTTATCAg > 1:1207634/1‑150 (MQ=17) cTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACa > 1:164551/1‑150 (MQ=255) ttCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAg > 1:178822/1‑150 (MQ=255) aCCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCg > 2:667175/1‑150 (MQ=255) aCCAATGGGCTCATCAACTACATCACGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGACTGATAAGGCGTTCACGCCGCATCCGGC‑AATCGGTGCA‑‑‑‑‑CGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTa < 2:962690/150‑1 (MQ=2) ccAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATGCGGCGtgaac < 2:586943/88‑5 (MQ=255) ccAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATGCGGCGtgaac > 1:586943/1‑84 (MQ=255) aTGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTGCACGCCGCATCCGGCGAT‑‑‑‑‑‑CGGTGGACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTAcgtc > 2:794702/1‑147 (MQ=9) tGGGCTCATCCACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGGCTTATCAGGCCTACAGGGCGATGcc < 1:1300645/150‑1 (MQ=255) catcaACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATg > 2:402327/1‑150 (MQ=255) catcaACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATg > 2:185954/1‑150 (MQ=255) catcaACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATg < 2:1340296/150‑1 (MQ=255) atcaACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGt < 2:422730/150‑1 (MQ=255) atcaACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGt > 1:430881/1‑150 (MQ=255) aCTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACAt > 1:873590/1‑150 (MQ=255) cTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGGCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATc < 1:1044750/150‑1 (MQ=255) ttCATCAAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATACTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGAAGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCg < 2:511007/150‑1 (MQ=255) catcaAGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGCTGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTa > 2:1136373/1‑150 (MQ=255) aaGCAGCAGCGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCg > 1:330751/1‑150 (MQ=255) agcagcagcGCGAGGCCAGAGTCCAA‑GAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTAGCAGGCCGACAGGGCGAGGCCGATATGTACCTCGTATTCgg > 1:992601/1‑150 (MQ=25) gcagcagcGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGc < 1:943324/150‑1 (MQ=255) gcagcagcGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGc < 1:316916/150‑1 (MQ=255) ctgcagcGCGAGGCCAGAGTCAAAT‑ACTCATCGTCGATATGTAGGCCGTATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTTCAGGTCGATGCCGATATGTACATCGTATTCGGCa < 1:1314638/148‑1 (MQ=37) agcagcGCGAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCaa > 2:685925/1‑150 (MQ=255) cagcGCGAGGCCTGAGTCCAAT‑AATGATCGTCGATATGTAGGCCGGATAAGGCGTTCAGGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGAGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAAtt < 1:748051/150‑1 (MQ=37) cgcgAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGACGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGAGTATTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTaaa > 1:1126057/1‑149 (MQ=37) cgAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATAc < 1:298772/150‑1 (MQ=255) cgAGGCCAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATAc < 1:567055/150‑1 (MQ=255) ccAGAGTCCAAT‑AATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGTC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGACAGATGCGACGCCGTCGAGTCATCACAGGCCTACAGGTCGATGCCGCTATGTACCTCGTATTCGGCAATTAATAAATAGc > 1:856236/1‑150 (MQ=37) gccAAT‑AATCATCGTCGATCTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACgatt < 1:1246182/149‑1 (MQ=255) aataaTCATCGTCGATATGTAGGCCGGATAAGGCGATCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATACGACGCGGTCGCGTCTTATCATGCCGACAGGTAGATTCCTATATGTACATCGTATTCGGCATATAAAACCAAGCCCgatttaa > 1:1373356/4‑147 (MQ=21) ataaTCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACgattgatt < 1:650494/148‑1 (MQ=255) atcatcGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTaaa > 1:42401/1‑150 (MQ=255) tcatcGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAAt > 2:1293947/1‑150 (MQ=255) cgtcgATATGTAGGCCGGATAAGGCGTTCACGCCGCATGCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAAcc < 1:11442/150‑1 (MQ=255) tGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAAc > 1:1186035/1‑150 (MQ=255) gTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGCTTGATTAAATAACCTTAATAACa > 2:553405/1‑150 (MQ=255) gttgCCGGATGCGGCGTGAACGCCTTATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACaa > 2:275128/4‑150 (MQ=38) ggCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATg > 2:1208625/1‑150 (MQ=255) gCCGGATGCGGCGTGAACGCCTTATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGc > 2:15707/1‑150 (MQ=38) gCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTTATAACAATGc > 2:282005/1‑150 (MQ=255) ccGGATGCGGCGTGAACGCCTTATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGcc > 2:348706/1‑150 (MQ=38) cGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCg < 2:178822/150‑1 (MQ=255) cGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCg > 1:417955/1‑150 (MQ=255) ggATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGa < 2:666599/150‑1 (MQ=255) ggATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGa < 2:330751/150‑1 (MQ=255) aGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTTATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTa < 2:247605/150‑1 (MQ=255) aGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTa < 2:385833/150‑1 (MQ=255) aGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTa > 1:15688/1‑150 (MQ=255) aGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTAGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTa > 1:1116685/1‑150 (MQ=255) | AGCAGCTGGCTAAGAAAATAGAGCCTGAGCTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAATAAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑AA‑‑‑‑‑‑C‑‑‑‑‑‑CGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTA > NC_000913_3_hsa_pgi/4235313‑4235610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |