| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_pgi | 3917461 = | 110 (1.160) | 12 (0.130) | 10/286 | 8.0 | 10.1% | coding (805/864 nt) | atpG | F1 sector of membrane‑bound ATP synthase, gamma subunit |
| ? | NC_000913_3_hsa_pgi | 3917489 = | 108 (1.180) | coding (777/864 nt) | atpG | F1 sector of membrane‑bound ATP synthase, gamma subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCTGCTGCGTCGTTATGTCGAATCTCAGGTTTATCAGGGCGTGGTTGAAAACCTGGCCAGCGAGCAGGCCGCCCGTATGGTGGCGATGAAAGCCGCGACCGACAATGGCGGCAGCCTGATTAAAGAGCTGCAGTTGGTATACAACAAAGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_hsa_pgi/3917612‑3917461‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctcTTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAGCAACGCCTTCGGATC > NC_000913_3_hsa_pgi/3917489‑3917635 CCTGCTGCGTCGTTATGTCGAATCTCAGGTTTATCAGGGCGTGGTTGAAAACCTGGCCAGCGAGCAGGCCGCCCGTATGGTGGCGATGAAAGCCGCGACCGACAATGGCGGCAGCCTGATTAAAGAGCTGCAGTTGGTATACAACAAAG > 1:948550/1‑149CCTGCTGCGTCGTTATGTCGAATCTCAGGTTTATCAGGGCGTGGTTGAAAACCTGGCCAGCGAGCAGGCCGCCCGTATGGTGGCGATGAAACCCGCGACCGACAATGGCGGCAGCCTGATTAAAGAGCTGCAGTTGGTATACAACAAAG > 2:224126/1‑149CCTGCTGCGTCGTTATGGCGAATCTCAGGTTTATCAGGGCGTGGTTGAAAACCTGGCCAGCGAGCAGGCCGCACGTATGGTGGCGATGAAAGCCGCGACCGACAATGGCGGCAGCCTGATTAAAGAGCTGCAGTTGGTATACAACAAAG < 1:1031399/149‑1 CTGCTGCGTCGTTATGTCGAATCTCAGGTTTATCAGGGCGTGGTTGAAAACCTGGCCAGCGAGCAGGCCGCCCGTATGGTGGCGATGAAAGCCGCGACCGACAATGGCGGCAGCCTGATTAAAGAGCTGCAGTTGGTATACAACAAAGC > 1:392689/1‑149 AATGGCGGCAGCCTGATTAAAGAGCTGCAGTTGGTATACAACAAAGCTCTTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGA > 1:465575/1‑149 CTGATTAAAGAGCTGCAGTTGGTATACAACAAAGCTCTTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATAA > 2:645020/1‑149 CTGATTAAAGAGCTGCAGTTGGTATACAACAAAGCTCTTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATAA > 2:1301176/1‑149 TGATTAAAGAGCTGCAGTTGGTATACAACAAAGCTCTTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCACCCACGCCCTGATTAACCTGCGCTTCGGCAgacc > 2:1445405/1‑145 ATTAAAGAGCTGCAGTTGGTATACAACAAAGCTCTTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATAACGA > 2:1249483/1‑149 TTAAAGAGCTGCAGTTGGTATACAACAAAGCTCTTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCCACCACGCCCTGATAATCCTGAGATTCGACATAACGAC > 1:238910/1‑149 AAAGAGCTGCAGTTGGTATACAACAAAGCTCTTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGACCTGATAAACCTGAGATTCGACATAACGACGC > 2:723820/1‑149 AAGAGCTGCAGTTGGTATACAACAAAGCTCTTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATAACGCCGCA > 2:724671/1‑149 AGAGCTGCAGTTGGTATACAACAAAGCTCGTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCCTCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATAGCGACGCcg > 1:933353/1‑147 TATACAACAAAGCTCTTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGA < 2:202887/117‑1 TATACAACAAAGCTCTTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGA > 1:202887/1‑117 actgAAGCTCTTTAATCAGGCTTCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCCCGCCCTGAGAAACCTGAGAATCGACATAACGACGCAGGAGGGTATCCAGCAACGCC > 2:1352843/5‑149 GCTCTTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAGCAACGCCTTCGGt > 1:1027883/1‑148 CTCTTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAGCAACGCCTTCGGAT < 2:1057845/149‑1 TCTTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAGCAACGCCTTCGGATC < 1:1434982/149‑1 CCTGCTGCGTCGTTATGTCGAATCTCAGGTTTATCAGGGCGTGGTTGAAAACCTGGCCAGCGAGCAGGCCGCCCGTATGGTGGCGATGAAAGCCGCGACCGACAATGGCGGCAGCCTGATTAAAGAGCTGCAGTTGGTATACAACAAAGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_hsa_pgi/3917612‑3917461‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctcTTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAGCAACGCCTTCGGATC > NC_000913_3_hsa_pgi/3917489‑3917635 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |