New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_pgi	= 226729	6 (0.060)	18 (0.190)	9/288	8.5	75.5%	noncoding (971/2904 nt)	rrlH	23S ribosomal RNA of rrnH operon
	?	NC_000913_3_hsa_pgi	2728240 =	NA (NA)					noncoding (945/2904 nt)	rrlG	23S ribosomal RNA of rrnG operon
Rejected: Coverage evenness skew score above cutoff.

AAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_pgi/226578‑226729 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATCTCC  >  NC_000913_3_hsa_pgi/2728240‑2728387                                                                                                                                                                                                                                                                                                              acGCTATTTAGCTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGGCATCCCGACTTACCAACCCGATGCATACTGCGAATACCGGAGAATGTTATCACGGGAGTCACACGGCGGGTGCTAACGTCCGTC                                                                                                                                                         <  1:1255615/147‑1   GCTATTTCGGTAGCGCCTCGGGCACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAACGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGT                                                                                                                                                       <  1:1509481/149‑1    CTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCATCCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACGCGGCGGGTGCTAACGTCCGTCGTG                                                                                                                                                      >  1:260008/1‑149                                                                   ATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTATCCGGTATTCGCAGTTTGCATAGGGTTGGTAAGTCGGGTTGAC                                                                                       >  2:1445759/1‑149                                                                                                 GAATACCGGAGAATGTTATCACGGGAGACACCCGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGTGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGG                                                         >  2:739076/1‑149                                                                                                                TTATCACGGGAGACACACGGCGGGTGTTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAG                                          >  1:584227/1‑149                                                                                                                     ACGGGAGACACACGGCGGGTGCTATCGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGGTGGTAAGTCGGGATGACCCCCTGGCCGAAACAGTGGTCTACCCACGGAGCTGAATTCACGAGGCGCT                                     >  1:1409527/1‑149                                                                                                                            ACACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGCGGCGCTACCTAAA                              >  1:951079/1‑149                                                                                                                            ACACACGGCGGGTGCTAACGTC‑‑‑CGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATAG                           >  1:788460/1‑149                                                                                                                             CACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCACGAGCTAACATACTCCTGAATTCACAAATTGCATCGGGTTGGTAAGTCGGGCTGACCCCCGTGCCGAAACAGTGCTCGACCCCCGGAGATGAATACACGAGGCGCTACCTAAAT                             >  2:153146/1‑149                                                                                                                             CACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCACGAGATAAAATTCTCATCTATTAGAAATTTGCATCGGGTTGGTAAGTCGGGATGACCCACTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCCCGAGGCGCTACCTAAAT                             >  2:969214/1‑149                                                                                                                              ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCTTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCACGGAGATGAATTCACGAGGCGCTAACTAAGTA                            >  2:697376/1‑149                                                                                                                              ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGCCCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATA                            >  2:1433238/1‑149                                                                                                                              ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATA                            >  1:430911/1‑149                                                                                                                              ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGAGGAATTCACGAGGCGCTACCTAAATA                            >  2:1364470/1‑149                                                                                                                              ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGAGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATA                            >  2:1246725/1‑149                                                                                                                              ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAACTCGGCATGACCCCCTTGCCGAATCAGTCCTATACCCCCGGAGATCAATTCACGACGCGCTCCCTATATA                            >  2:474022/1‑149                                                                                                                              ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGATTGCATCGGGTTGGTAAGTCGGGTTGACCCCCTTGCCGAAACGGTGCGCTACCCCCGGAGATGCATTCACGAGGCGCTTCCTAAGTA                            >  1:466583/1‑149                                                                                                                              ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATACGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTATACCCCCGGAGTAGAATTCCCGAGGCGCTACCTAAATA                            >  2:59790/1‑149                                                                                                                               CACGGCGGGTGCTAACGTCCGTCGTGTTTCTCACGTGATAACAATCTCCATTAATATAAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATAG                           >  2:206692/1‑149                                                                                                                                ACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGCCCCCCTTGCCGAAACAGTGCTCTCCCCCCGGAGATGAATTCACGAGGCGCTACCTATATAGC                          >  1:1128686/1‑149                                                                                                                                                     CGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATC     <  2:1137085/149‑1                                                                                                                                                       TGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCAGGAGATGAATTCACGAGGCGCTAGCTAAATAGCTTTCGGGGAGACCCAGCTATCTg   >  1:1246854/1‑148                                                                                                                                                        GTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATCTCC  <  2:1451563/149‑1                                                                                                                                                                                                                                                                                                              AAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_pgi/226578‑226729 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATCTCC  >  NC_000913_3_hsa_pgi/2728240‑2728387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.