New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_pgi = 2267296 (0.060)18 (0.190) 9/288 8.5 75.5% noncoding (971/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913_3_hsa_pgi 2728240 = NA (NA)noncoding (945/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
Rejected: Coverage evenness skew score above cutoff.

AAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_pgi/226578‑226729
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATCTCC  >  NC_000913_3_hsa_pgi/2728240‑2728387
                                                                                                                                                                                                                                                                                                            
acGCTATTTAGCTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGGCATCCCGACTTACCAACCCGATGCATACTGCGAATACCGGAGAATGTTATCACGGGAGTCACACGGCGGGTGCTAACGTCCGTC                                                                                                                                                         <  1:1255615/147‑1
  GCTATTTCGGTAGCGCCTCGGGCACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAACGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGT                                                                                                                                                       <  1:1509481/149‑1
   CTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCATCCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACGCGGCGGGTGCTAACGTCCGTCGTG                                                                                                                                                      >  1:260008/1‑149
                                                                  ATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTATCCGGTATTCGCAGTTTGCATAGGGTTGGTAAGTCGGGTTGAC                                                                                       >  2:1445759/1‑149
                                                                                                GAATACCGGAGAATGTTATCACGGGAGACACCCGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGTGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGG                                                         >  2:739076/1‑149
                                                                                                               TTATCACGGGAGACACACGGCGGGTGTTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAG                                          >  1:584227/1‑149
                                                                                                                    ACGGGAGACACACGGCGGGTGCTATCGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGGTGGTAAGTCGGGATGACCCCCTGGCCGAAACAGTGGTCTACCCACGGAGCTGAATTCACGAGGCGCT                                     >  1:1409527/1‑149
                                                                                                                           ACACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGCGGCGCTACCTAAA                              >  1:951079/1‑149
                                                                                                                           ACACACGGCGGGTGCTAACGTC‑‑‑CGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATAG                           >  1:788460/1‑149
                                                                                                                            CACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCACGAGCTAACATACTCCTGAATTCACAAATTGCATCGGGTTGGTAAGTCGGGCTGACCCCCGTGCCGAAACAGTGCTCGACCCCCGGAGATGAATACACGAGGCGCTACCTAAAT                             >  2:153146/1‑149
                                                                                                                            CACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCACGAGATAAAATTCTCATCTATTAGAAATTTGCATCGGGTTGGTAAGTCGGGATGACCCACTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCCCGAGGCGCTACCTAAAT                             >  2:969214/1‑149
                                                                                                                             ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCTTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCACGGAGATGAATTCACGAGGCGCTAACTAAGTA                            >  2:697376/1‑149
                                                                                                                             ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGCCCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATA                            >  2:1433238/1‑149
                                                                                                                             ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATA                            >  1:430911/1‑149
                                                                                                                             ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGAGGAATTCACGAGGCGCTACCTAAATA                            >  2:1364470/1‑149
                                                                                                                             ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGAGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATA                            >  2:1246725/1‑149
                                                                                                                             ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAACTCGGCATGACCCCCTTGCCGAATCAGTCCTATACCCCCGGAGATCAATTCACGACGCGCTCCCTATATA                            >  2:474022/1‑149
                                                                                                                             ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGATTGCATCGGGTTGGTAAGTCGGGTTGACCCCCTTGCCGAAACGGTGCGCTACCCCCGGAGATGCATTCACGAGGCGCTTCCTAAGTA                            >  1:466583/1‑149
                                                                                                                             ACACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATACGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTATACCCCCGGAGTAGAATTCCCGAGGCGCTACCTAAATA                            >  2:59790/1‑149
                                                                                                                              CACGGCGGGTGCTAACGTCCGTCGTGTTTCTCACGTGATAACAATCTCCATTAATATAAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATAG                           >  2:206692/1‑149
                                                                                                                               ACGGCGGGTGCTAACGTCCGTCGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGCCCCCCTTGCCGAAACAGTGCTCTCCCCCCGGAGATGAATTCACGAGGCGCTACCTATATAGC                          >  1:1128686/1‑149
                                                                                                                                                    CGTGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATC     <  2:1137085/149‑1
                                                                                                                                                      TGTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCAGGAGATGAATTCACGAGGCGCTAGCTAAATAGCTTTCGGGGAGACCCAGCTATCT  >  1:1246854/1‑148
                                                                                                                                                       GTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATCTCC  <  2:1451563/149‑1
                                                                                                                                                                                                                                                                                                            
AAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_pgi/226578‑226729
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgTGTCTCCCGTGATAACATTCTCCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTGCTCTACCCCCGGAGATGAATTCACGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATCTCC  >  NC_000913_3_hsa_pgi/2728240‑2728387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.