BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913_3_hsa_pgi	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913_3_hsa_pgi	1978503–1979269	1979278	10–776	125 [0]	[1] 128	insB1–insA	insB1,insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_pgi	= 1978502	0 (0.000)	119 (1.250)	78/280	0.1	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
*	?	NC_000913_3_hsa_pgi	1979279 =	0 (0.000)	119 (1.250)	78/280	0.1	100%	intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

Only 100 of 125 total aligned reads displayed.

GAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATT  >  NC_000913_3_hsa_pgi/1978356‑1978650

gAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta                                                                                                                                                    >  1:704552‑M1/1‑147 (MQ=255)

       gTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAACCACTCCATTACTTAACATAAATGtataagtca                                                                                                                                             >  1:1494135‑M1/1‑140 (MQ=255)

       gTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtca                                                                                                                                             <  1:739910‑M1/149‑10 (MQ=255)

          tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatac                                                                                                                                          <  2:755646‑M1/149‑13 (MQ=255)

            tACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactt                                                                                                                                        >  1:645175‑M1/1‑135 (MQ=255)

             acacTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttt                                                                                                                                       >  2:1527027‑M1/1‑134 (MQ=255)

              aactTATCAAATATTTTACCAAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACCGAGTGGTGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttt                                                                                                                                      <  2:1135764‑M1/148‑17 (MQ=255)

                   aTCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttt                                                                                                                                 <  1:446238‑M1/149‑22 (MQ=255)

                     cTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                               <  1:958512‑M1/149‑24 (MQ=255)

                      tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACTCAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                                                                              >  1:1315535‑M1/1‑125 (MQ=255)

                      tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                                                                              >  1:869540‑M1/1‑125 (MQ=255)

                      tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttatggg                                                                                                                              >  1:232374‑M1/1‑125 (MQ=255)

                      tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGCGGCGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAAATACTTAACATAAATGtataagtcatactttttttttggg                                                                                                                              >  2:1402713‑M1/1‑125 (MQ=255)

                       aaGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                                                                             >  1:1029087‑M1/1‑124 (MQ=255)

                         gATTTTTCCTAAATCGACGCAACTGTAGTCGTCACTACACGCACTTTCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGCTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgtgtgt                                                                                                                           <  2:1215262‑M1/149‑28 (MQ=255)

                          aTTTTTCCTAAATCGACGCCACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgta                                                                                                                          <  1:1331929‑M1/149‑29 (MQ=255)

                          aTTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACTGAGGGGGGCTGAGATTTTCAATAAAGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgta                                                                                                                          >  1:609674‑M1/1‑121 (MQ=255)

                             tttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                                                                       <  2:704552‑M1/149‑32 (MQ=255)

                               tCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCATTTACTTAACATATATGtataagtcataattttgttttgggtgtttttca                                                                                                                     >  2:931529‑M1/1‑116 (MQ=255)

                                ccTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATTtataagtcatacttttgttttgggtgtatttcaa                                                                                                                    >  1:252478‑M1/1‑115 (MQ=255)

                                ccTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa                                                                                                                    <  1:495026‑M1/149‑35 (MQ=255)

                                 cTAAATCGACGCAACTGTACTCGTCACTACCCGCACATACAACGCAGGGGGGCTGCGAGTTTCAATTATGCGTGCTGCAGAGCACACAAACCACTCAATTACTTAACATAAATGtataagtcatactttggttttgggtgtagttcaat                                                                                                                   >  2:732180‑M1/1‑114 (MQ=255)

                                 cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                                                                                                   >  1:1414436‑M1/1‑114 (MQ=255)

                                  tAAAGCGACGCCACTGTACTCGTCACTACACGCACATACACCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatccttttgttttgggtgtatttcaatc                                                                                                                  <  2:1240201‑M1/149‑37 (MQ=255)

                                   aaaTCGACGCAACTGTACGCGTCACTACACGCACATACAACGGCGGGGGGCGGCGATTTTCAATAATGCGTGCTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtctaagtcatacttttgttttgggtgtatttcaatct                                                                                                                 <  2:1458395‑M1/149‑38 (MQ=255)

                                     aTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                                                                                                               <  1:1661289‑M1/149‑40 (MQ=255)

                                           gaaactGTTCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTGAATAATGCGTGATGCAGATCACGAAAAACACTCATTTACTTAACATAAATGtataagggatacttttgttttgtgtgtatttaaatctgttataaa                                                                                                         >  2:377627‑M1/3‑104 (MQ=255)

                                           gCAACTGTACTCGTCACTACCCGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACGCTAAACACTCATTTCCTTATCATAAATGtataagtcatacttttgtttagggtgtatttcaatctgttataaa                                                                                                         >  2:383678‑M1/1‑104 (MQ=255)

                                           gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                         <  2:611117‑M1/149‑46 (MQ=255)

                                           gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                         >  1:1230334‑M1/1‑104 (MQ=255)

                                              aCTGTACTCGTCACTACACCCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtt                                                                                                      <  2:1102255‑M1/149‑49 (MQ=255)

                                                tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttt                                                                                                    >  1:208891‑M1/1‑99 (MQ=255)

                                                 gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                                   <  1:1301847‑M1/149‑52 (MQ=255)

                                                 gTACTCGTCACTACACGAACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                                   <  1:1371858‑M1/149‑52 (MQ=255)

                                                     tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgct                                                                                               >  1:29353‑M1/1‑94 (MQ=255)

                                                       gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctac                                                                                             >  1:788209‑M1/1‑92 (MQ=255)

                                                           cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                                         <  1:299990‑M1/149‑62 (MQ=255)

                                                           ataCACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                                         <  2:622386‑M1/148‑62 (MQ=255)

                                                             acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc                                                                                                  <  2:746497‑M1/138‑53 (MQ=255)

                                                             acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc                                                                                                  >  1:746497‑M1/1‑86 (MQ=255)

                                                              cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagca                                                                                      >  1:1340891‑M1/1‑85 (MQ=255)

                                                               acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaa                                                                                     >  2:246535‑M1/1‑84 (MQ=255)

                                                               acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaa                                                                                     >  2:351034‑M1/1‑84 (MQ=255)

                                                               acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagacatacttttgttttgggtgtatttcaaaatgataaaatgtttttcgctacgctagcaa                                                                                     >  2:1336008‑M1/1‑84 (MQ=255)

                                                               acGCACATACAACGGAGGGGGGCTGCGATTTTCAAGAATGCGTGATGCAGCTCACACAAAACACTCAATTACTTAACATAAAAGtataagtcatacttttgatttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaa                                                                                     >  2:1583629‑M1/1‑84 (MQ=255)

                                                                   acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaa                                                                                 >  1:173220‑M1/1‑80 (MQ=255)

                                                                   acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaa                                                                                 <  1:1636320‑M1/149‑70 (MQ=255)

                                                                      ttcatcggacgGTGGCTGCGATATACAATAATCCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacaattgatttgggtgtatttcaatctgttaataagtttttcgctacgctagcaagcaaaaa                                                                              <  1:1146064‑M1/144‑73 (MQ=255)

                                                                       aCAACGGAGGGTGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaat                                                                             <  2:788209‑M1/149‑74 (MQ=255)

                                                                       aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaat                                                                             <  1:1235168‑M1/149‑74 (MQ=255)

                                                                           cGGAGGGGGGCTTCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatatgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                                                                         <  2:1292447‑M1/149‑78 (MQ=255)

                                                                           cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                                                                         <  1:1071430‑M1/149‑78 (MQ=255)

                                                                           cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                                                                         <  1:409254‑M1/149‑78 (MQ=255)

                                                                             gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaaca                                                                       <  1:1460238‑M1/149‑80 (MQ=255)

                                                                             gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaaca                                                                       <  2:235106‑M1/149‑80 (MQ=255)

                                                                              tggggggcTGGGATTTTCAATAATGCGTGATGCAGATCACAGAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaatagtttttcgctacgctagcaagcaaaaatgaaacag                                                                      <  2:842086‑M1/148‑81 (MQ=255)

                                                                                 ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaa                                                                   <  1:449799‑M1/149‑84 (MQ=255)

                                                                                  gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                         <  1:73249‑M1/110‑46 (MQ=255)

                                                                                    gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataa                                                                >  1:1263933‑M1/1‑63 (MQ=255)

                                                                                    gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataa                                                                <  1:837591‑M1/149‑87 (MQ=255)

                                                                                     cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataat                                                               <  2:645175‑M1/149‑88 (MQ=255)

                                                                                      tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatc                                                              >  1:98834‑M1/1‑61 (MQ=255)

                                                                                      tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatc                                                              >  2:348145‑M1/1‑61 (MQ=255)

                                                                                      tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatc                                                              >  1:98162‑M1/1‑61 (MQ=255)

                                                                                             ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaaggttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg                                                       <  2:1414436‑M1/149‑96 (MQ=255)

                                                                                              tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttctctacgctagcaagataaaatgaaacaggaataatcgaaatggt                                                      >  2:474542‑M1/1‑53 (MQ=255)

                                                                                                aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat                                                    >  1:632221‑M1/1‑51 (MQ=255)

                                                                                                         tGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcctacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcac                                           <  2:869540‑M1/149‑108 (MQ=255)

                                                                                                          gATGCAGATCACACAACACACTCAATTACTTAACATAATAGtatcactcatactattgttttgggtgtatttcaatctgttaaaaaggatttcgctacgctagcaagcaaaaatgaaacaggaataatccaaatgggatgttgcgcaca                                          <  2:1303815‑M1/149‑109 (MQ=255)

                                                                                                          gATGCAGATCACACAAAACACTGAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttagctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaca                                          <  2:1494135‑M1/149‑109 (MQ=255)

                                                                                                           ttgCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacag                                         <  1:876308‑M1/148‑110 (MQ=255)

                                                                                                           aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacag                                         >  1:624214‑M1/1‑40 (MQ=255)

                                                                                                           aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacag                                         <  1:99823‑M1/149‑110 (MQ=255)

                                                                                                           aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatagaaattgtatgtttcgcacag                                         >  2:205812‑M1/1‑40 (MQ=255)

                                                                                                           aTGCAGATCACACAAAACACTCAATTACATCACATAAATGtataagtcatacatttgtttagggtgtatatcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacag                                         <  1:931529‑M1/149‑110 (MQ=255)

                                                                                                            tGCTGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagt                                        <  2:584713‑M1/149‑111 (MQ=255)

                                                                                                             gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtc                                       >  1:932005‑M1/1‑38 (MQ=255)

                                                                                                                  tgacacaaaACACTCAATTACTTAACATAAATGtataagtcatccttttgttttgggtgtatttcaatctgttaaaaagtttttcgctactctagcaagcaaaaatgaaacaggaataatagaaatgggatgttgcgcacagtcaaaat                                  <  2:540512‑M1/147‑117 (MQ=255)

                                                                                                                       caAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgataaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactc                             >  1:176738‑M1/1‑28 (MQ=255)

                                                                                                                              cTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaa                      <  1:488984‑M1/149‑129 (MQ=255)

                                                                                                                                 aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata                   >  2:872392‑M1/1‑18 (MQ=255)

                                                                                                                                 aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata                   >  2:768510‑M1/1‑18 (MQ=255)

                                                                                                                                 aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatggtgcgcacagtcaaaataactcaccgtaaata                   <  2:1315535‑M1/149‑132 (MQ=255)

                                                                                                                                 aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagaaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata                   >  2:1037814‑M1/1‑18 (MQ=255)

                                                                                                                                 aaTTACTTAACAAAAATGtataagtaatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacacgaataaacgaaatgggatgatgcgcacagtcaaaaaaactaaccgtaaaaa                   >  2:673135‑M1/1‑18 (MQ=255)

                                                                                                                                  aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataa                  >  2:960431‑M1/1‑17 (MQ=255)

                                                                                                                                   ttaattaaCATAAAAGtataaggcatacttttgttttgggttcatatcaatctgtaaaaaagattttctctaccctagcaagcaacaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataat                 <  1:1125844‑M1/149‑134 (MQ=255)

                                                                                                                                   ttACTTATCATAAATGtataagtcatacttttgttttgggtgtatttgaatctgttaaatagtttttcgctacgctagcaagcaacaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataat                 <  1:1643274‑M1/149‑134 (MQ=255)

                                                                                                                                      cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcatagtcaaaataactcaccgtaaataatcat              >  1:1636702‑M1/1‑13 (MQ=255)

                                                                                                                                      cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcat              >  1:1479225‑M1/1‑13 (MQ=255)

                                                                                                                                      cTTAACATAAATGaataagtcataattttgttttgcgtgtatttcaatctgataaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactccccgtaaataatcat              <  2:879675‑M1/149‑137 (MQ=255)

                                                                                                                                        tAACCTAAATGtataagtaatactgttgttttgggtgtatttcaatctgttaataagtttttcgctacgctagcaagcaaaaatgaaacaggaaaaatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatct            <  2:921794‑M1/149‑139 (MQ=255)

                                                                                                                                        tAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatct            >  2:1636082‑M1/1‑11 (MQ=255)

                                                                                                                                         aaCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctg           >  2:717602‑M1/1‑10 (MQ=255)

                                                                                                                                         aaCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaacgtaaataatcatgtg           >  2:1600613‑M1/1‑10 (MQ=255)

                                                                                                                                              aaaTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctata      >  2:511704‑M1/1‑5 (MQ=255)

                                                                                                                                               aaTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataa     <  2:1245708‑M1/149‑146 (MQ=255)

                                                                                                                                                 tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaat   <  2:29353‑M1/149‑148 (MQ=255)

                                                                                                                                                 tGtataagtcatacttttgttttgggtgtatttcaatatgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaat   >  2:970124‑M1/1‑2 (MQ=255)

                                                                                                                                                  gtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaata  <  2:232374‑M1/149‑149 (MQ=255)

GAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATT  >  NC_000913_3_hsa_pgi/1978356‑1978650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`