New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_pgi 1207790 =4 (0.110)39 (1.260) 34/242 NT 87.1% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913_3_hsa_pgi 1209619 = 8 (0.260)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

CAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGG  >  NC_000913_3_hsa_pgi/1207644‑1207938
                                                                                                                                                  |                                                                                                                                                    
cAGCGTGAGGGAGGCAACCGGGGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTG                                                                                                                                                    <  2:489546‑M1/149‑1 (MQ=255)
cAGCGGGGTGGAGGCATCCGGTGCCAGCCTGGGGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTATGCCGCAAGAAGCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTG                                                                                                                                                    <  2:657182‑M1/149‑1 (MQ=255)
  tcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacataggctataagcatgttaaatccccctggtaaaagcaggaatgattccatttgcttgttatttcttcattttcataaacgttgtt                                                                                                                                                  <  2:546537‑M1/5‑3 (MQ=255)
  gCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGACTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT                                                                                                                                                  <  1:411420‑M1/149‑1 (MQ=255)
    ctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatcgccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgctttttctttcttcattttcattaaccTTGGttt                                                                                                                                                <  2:274584‑M1/7‑1 (MQ=255)
     tgcacagttcagcgcattacgtttgagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg                                                                                                                                               >  2:542589‑M1/142‑149 (MQ=255)
      gcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg                                                                                                                                              <  1:227208‑M1/9‑1 (MQ=255)
      caagagtgcagtgcattacgttatagatctgtgttctcgtcatttgttgatacgcgtacagagccaataatgatgttaaatcccccttgtaaaagaaggaatgatgccatttgcttgttatttcttcattttcatacacgTTGGTTTgg                                                                                                                                              >  2:136889‑M1/141‑149 (MQ=255)
        tggAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGCTATCAAATCGGATGGCACTGTGCAACCCGCTCTCGAATACCTTGCTCTGGGA                                                                                                                                            >  2:508449‑M1/1‑149 (MQ=255)
              cagcgccttacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcatttttataaacgTTGGTTTGGGAGAAGGa                                                                                                                                      >  1:576407‑M1/133‑149 (MQ=255)
                  cGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCTGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctg                                                                                                                                  >  2:546261‑M1/1‑144 (MQ=255)
                    gtgacggtgtggatcggttttacggtcagttggtgactcgcgtacataggcaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaaa                                                                                                                                >  2:212891‑M1/127‑149 (MQ=255)
                     ttacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg                                                                                                                                               <  1:298320‑M1/8‑1 (MQ=255)
                     ttacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg                                                                                                                                               >  2:298320‑M1/126‑133 (MQ=255)
                        cAGCCTGGAAAAGGGGCGGCACCACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattac                                                                                                                            <  1:565797‑M1/149‑12 (MQ=255)
                         aGCCTGGAGGAGGGGCGGCACGACCAGGTACTGACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                           <  2:577243/149‑1 (MQ=255)
                          ttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGCGCAAGactccat                                                                                                                          <  2:466382‑M1/29‑4 (MQ=255)
                          ttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgcaatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAAt                                                                                                                          >  1:473309‑M1/121‑149 (MQ=255)
                          gCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAt                                                                                                                          <  1:515731/149‑1 (MQ=255)
                           tgtatgtctttgttctggtcatttgttgatacgcgtacatagccaataagcatgttaactccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATg                                                                                                                         >  2:222983‑M1/120‑149 (MQ=255)
                              acatctgtgttcgggtcatttggtgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaacgacgccatttgcggggtatgtctgcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag                                                                                                                      >  2:76261‑M1/117‑149 (MQ=255)
                                agaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt                                                                                                                    <  1:116364‑M1/149‑20 (MQ=255)
                                    gtgttctggtcattagttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg                                                                                                                >  2:656371‑M1/111‑149 (MQ=255)
                                     tgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc                                                                                                               >  1:415930‑M1/110‑149 (MQ=255)
                                     tgttctggtcatttggtgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc                                                                                                               >  1:360222‑M1/110‑149 (MQ=255)
                                        tctggtcatttgttgatacccgtacatagccaataagcatgttaaatccccctggtaatagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc                                                                                                            >  2:580640‑M1/107‑149 (MQ=255)
                                              catttgtttatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg                                                                                                      >  1:569471‑M1/101‑149 (MQ=255)
                                              catttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg                                                                                                      <  1:549249‑M1/49‑1 (MQ=255)
                                                    ttgatacgcgtacatagccaataagcaagttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAc                                                                                                <  1:298647‑M1/55‑1 (MQ=255)
                                                    gtgatacgagtacatggccaagaagcatgttaaatccccctggtaaaagcaggaatgatgtcatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAc                                                                                                >  1:44338‑M1/95‑149 (MQ=255)
                                                      gatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTa                                                                                                        >  2:162230‑M1/93‑139 (MQ=255)
                                                      gatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTa                                                                                                        <  1:162230‑M1/47‑1 (MQ=255)
                                                      gatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCg                                                                                              <  1:265897‑M1/57‑1 (MQ=255)
                                                       cttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagc                                                                                             >  1:167161‑M1/1‑107 (MQ=255)
                                                         acgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttattcattttcataaacgTTGGTTTGGGAGAAGAAGCAAAACTCAATGCAGCAACGGCTACATTAGTACGCACCGGtt                                                                                           <  1:246449‑M1/60‑1 (MQ=255)
                                                           gcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGTGAGAAGGAGCAAAACTCCCTACAGCGACGGCTACCTTCGAACGCCCCGGTTTc                                                                                         <  2:366479‑M1/62‑1 (MQ=255)
                                                              tacatagccaattagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTGGGTTTGGGAGAAGGTGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa                                                                                      >  1:585055‑M1/85‑149 (MQ=255)
                                                                 ttCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcca                                                                                   >  1:575631‑M1/1‑97 (MQ=255)
                                                                     cgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacag                                                                               <  1:523456‑M1/149‑57 (MQ=255)
                                                                     cgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacag                                                                               >  1:203704‑M1/1‑93 (MQ=255)
                                                                      caataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGGTGAACCGGTTTCATAGCTATAcc                                                                              <  2:528576‑M1/73‑1 (MQ=255)
                                                                      caataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAcc                                                                              <  2:517893‑M1/73‑1 (MQ=255)
                                                                       aataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCg                                                                             <  1:163278‑M1/74‑1 (MQ=255)
                                                                          tgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGtt                                                                          >  1:82561/1‑149 (MQ=255)
                                                                            gcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcatacacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt                                                                        <  1:532657‑M1/79‑1 (MQ=255)
                                                                              atgttaaatccccctgtgaaaagtagcaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCCACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGa                                                                      >  1:595905‑M1/69‑149 (MQ=255)
                                                                              agggtaaacgcccctggtaaaagccggaatgatgccatttgcgtgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGa                                                                      >  2:53566‑M1/69‑149 (MQ=255)
                                                                                 ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                           >  1:469439‑M1/66‑93 (MQ=255)
                                                                                 ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                           <  2:469439‑M1/28‑1 (MQ=255)
                                                                                       gaagataccgttttgcGATATCAAATCGGATGGCAGCGTGCAAACGGGTCTCGAAAACCTTGGTTGGGGAGAAGGccctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatg                                                             <  2:412992‑M1/142‑75 (MQ=255)
                                                                                       cAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatg                                                             <  1:414759‑M1/149‑75 (MQ=255)
                                                                                       cAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatg                                                             <  1:414054‑M1/149‑75 (MQ=255)
                                                                                         ccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGCCGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAtt                                                           <  2:622035‑M1/92‑1 (MQ=255)
                                                                                         aGAACCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggt                                                           <  1:305743‑M1/149‑77 (MQ=255)
                                                                                         aGAACCCGTTTGGCGAGATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaagaggctggctgaaatgcaatggt                                                           <  2:493430‑M1/149‑77 (MQ=255)
                                                                                          cctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTg                                                          <  1:149180‑M1/93‑1 (MQ=255)
                                                                                          cctggtaaaagcaggaatgatgccatttgcttgatatgtcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTg                                                          <  2:372993‑M1/93‑1 (MQ=255)
                                                                                                   tGGGGATATCAAATCGGATGCAACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGTAGAAGGttcggcattaccggttggtgtcgcggtttcgtggtcctcagcccctgcgccaacaggctggctgaaatgcaatggtgccgcttttt                                                 <  2:327043‑M1/149‑87 (MQ=255)
                                                                                                    gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGAACGCAACGGTGTAATAGCTATACCGGTTATGATTGGTGGTATTGAGAAATCAGt                                                <  1:651474‑M1/103‑1 (MQ=255)
                                                                                                     gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttct                                               >  2:283755‑M1/1‑61 (MQ=255)
                                                                                                      cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctg                                              <  1:283755‑M1/149‑90 (MQ=255)
                                                                                                      aggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTaa                                              >  1:438623‑M1/45‑149 (MQ=255)
                                                                                                      aggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACCCACCGGTAACCCAGCAATACCGTTGATGAGTGGTGGTATTGAGCAATCAGTaa                                              <  1:456089‑M1/105‑1 (MQ=255)
                                                                                                        gaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTCAGCAATCAGTAATc                                            <  2:657003‑M1/107‑1 (MQ=255)
                                                                                                           tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggcgggcggaaatgcaatggtgccgctttttctgctgaa                                         <  1:508392‑M1/149‑95 (MQ=255)
                                                                                                              aaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaa                                      >  1:287568‑M1/1‑52 (MQ=255)
                                                                                                              aaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaa                                      >  1:544465‑M1/1‑52 (MQ=255)
                                                                                                                  atttgcttgttatttcttcatgttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTggg                                  >  1:613355‑M1/33‑149 (MQ=255)
                                                                                                                       cttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAACAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTAATGATTGGTGGTATTGAGCAAGCAGTAATCGTTCagtgggggggg                             <  1:242284‑M1/122‑4 (MQ=255)
                                                                                                                        cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATCCCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTAAGTGGGGGTGGa                            >  1:450411/1‑149 (MQ=255)
                                                                                                                          gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGGAATCATTCAGTGGGGGTGGAAt                          <  1:229158‑M1/125‑1 (MQ=255)
                                                                                                                          cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttgatgtaccggttccgtggccttaagcacctccgccaacaggctgtctgaaatgcaatggtgccgctttttctgatgaagaataccccgaactg                          >  2:178195‑M1/1‑40 (MQ=255)
                                                                                                                             tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagactccccggcactggca                       >  2:649877‑M1/1‑37 (MQ=255)
                                                                                                                                  aCGGCTCTCGAAACTCTTGGTTTGGTAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggc                  <  2:483022‑M1/149‑118 (MQ=255)
                                                                                                                                  aCGACTCTCGAAAACCTTGGTTGGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggc                  <  1:296994‑M1/149‑118 (MQ=255)
                                                                                                                                    cgttttcgtaagcgTTGGGTTGGGCGAAGGAGGAAAATTCAATGCAGCAACGGCTACATTAGGACGTAGCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAg                >  2:48399‑M1/15‑149 (MQ=255)
                                                                                                                                       tctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatc             <  1:127483‑M1/149‑123 (MQ=255)
                                                                                                                                        ttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGTTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTTGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATc            >  1:158145‑M1/11‑149 (MQ=255)
                                                                                                                                        cttgaagACCTTGGTTTGGGAGCAGGctctgcattacctggcggtggcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatcc            <  1:124319‑M1/146‑124 (MQ=255)
                                                                                                                                                 cTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataa   >  1:33776‑M1/1‑17 (MQ=255)
                                                                                                                                                  TTGGTTTGGGAGAAGGAGCAAACATCCAACCTTGTGCGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGATGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggg  <  2:478006‑M1/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
CAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGG  >  NC_000913_3_hsa_pgi/1207644‑1207938

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.