Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913_3_hsa_pgi 1,978,503 Δ776 bp 100% insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_hsa_pgi 1978503 1979278 776 24 [0] [0] 24 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_pgi = 19785020 (0.000)22 (0.670) 21/258 NT 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913_3_hsa_pgi 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

GGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGC  >  NC_000913_3_hsa_pgi/1978361‑1978644
                                                                                                                                             |                                                                                                                                              
ggtgctttaCACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAATAAACACTCAATTACTTAACATAAATGtataagt                                                                                                                                         <  1:660341‑M1/145‑8 (MQ=255)
    ctgtacaCTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcata                                                                                                                                     <  2:460168‑M1/146‑12 (MQ=255)
                cTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                         >  1:359868‑M1/1‑126 (MQ=255)
                   agctgtttcctaaATCGACGCAACGGTACTCGTCACTACGCGCACATACAACGGAGGGGGGCTGCGATTTTAAACAATGAGTGATGCAGATCACACAACACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtg                                                                                                                      <  2:1446‑M1/144‑27 (MQ=255)
                            cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtctttcaat                                                                                                             >  1:379650‑M1/1‑114 (MQ=255)
                              aaaTCGACGGCACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatct                                                                                                           <  2:655771‑M1/149‑38 (MQ=255)
                                      tcagctgtaCTCGTCACTACACGCACATTAAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                   <  2:637393‑M1/145‑46 (MQ=255)
                                       cAACTGTACTCGTCACTACACGCACATACTACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaag                                                                                                  <  1:572651‑M1/149‑47 (MQ=255)
                                           tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttt                                                                                              >  2:575573‑M1/1‑99 (MQ=255)
                                                tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttaaatctgttaaaacgtttttccct                                                                                         >  2:120184‑M1/1‑94 (MQ=255)
                                                tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttattttgggtgtatttcaatctgtttaaaagtttttcgct                                                                                         >  2:27710‑M1/1‑94 (MQ=255)
                                                      cTACACGCACATACAACGGAGGGGGGCCACGATTTTCAATAATGCCTGATGCAGATCACACAAAACACTCAATTACTCAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                                   <  2:319698‑M1/149‑62 (MQ=255)
                                                              acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaa                                                                           >  1:265854‑M1/1‑80 (MQ=255)
                                                                   cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatg                                                                      >  1:596840‑M1/1‑75 (MQ=255)
                                                                     aCGGAGGGGGGCTGCGATTTTCAATCATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaa                                                                    <  1:602782‑M1/149‑77 (MQ=255)
                                                                            ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaa                                                             >  1:261344‑M1/1‑66 (MQ=255)
                                                                                cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataat                                                         >  1:148999‑M1/1‑62 (MQ=255)
                                                                                 tGCGATTTTCAAGAAGGAGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctagtagaacatttttagctacgctagcaagcataactgaaaaacgaaaaatg                                                        >  2:136770‑M1/1‑61 (MQ=255)
                                                                                      ttttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAGTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat                                                   >  1:438165‑M1/1‑56 (MQ=255)
                                                                                                     gATGCAGATCACACAAAACTCTCAATTACTTAACATTAATGtctaagtcatactttttttttgggtggatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaca                                    <  2:369336‑M1/149‑109 (MQ=255)
                                                                                                               acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                          >  1:77917‑M1/1‑31 (MQ=255)
                                                                                                                         cTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactccccgtaa                >  2:249747‑M1/1‑21 (MQ=255)
                                                                                                                                 cTTAACATAAATGtataagtgatacttttgttttgggtgtatttcaatttgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatggaaatgggttgttgcgcacagtacacataccttaccgtaaaaattaat        >  2:289236‑M1/1‑13 (MQ=255)
                                                                                                                                       aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacaggcaaaatagctcaccgtaaatcatcaactgcta  >  1:217017‑M1/1‑7 (MQ=255)
                                                                                                                                             |                                                                                                                                              
GGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGC  >  NC_000913_3_hsa_pgi/1978361‑1978644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.