BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_pgi	4245126 =	NA (NA)	285 (1.310)	43/174	8.5	NA	noncoding (7/126 nt)	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences
*	?	NC_000913_3_hsa_pgi	4245152 =	NA (NA)	285 (1.310)	43/174	8.5	NA	noncoding (33/126 nt)	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 3244 total aligned reads displayed.

AGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAG  >  NC_000913_3_hsa_pgi/4245027‑4245225

agcagGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCCTTCCAGGAc                                                                                                     >  2:5635886/1‑100 (MQ=255)

agcagGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGAc                                                                                                     >  1:3008758/1‑100 (MQ=255)

agcagGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGAc                                                                                                     >  1:1567474/1‑100 (MQ=255)

agcagGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGAc                                                                                                     <  2:4532167/100‑1 (MQ=255)

 gcagGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACg                                                                                                    >  1:5539038/1‑100 (MQ=255)

  cagGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACgg                                                                                                   <  1:1836478/100‑1 (MQ=255)

  cagGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACgg                                                                                                   <  2:483341/100‑1 (MQ=255)

  cagGCCGAGCAGACCTAGCACCGACCATTTCAGCGCGTCGCTCTGCCACCAATGATTCTTCTTAAGGACATCCATGGGGATCTTCCTCATTCCAGGACg                                                                                                    >  2:1184499/1‑99 (MQ=255)

   agGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGa                                                                                                  <  2:1559362/100‑1 (MQ=255)

     gCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATa                                                                                                <  1:5207402/100‑1 (MQ=255)

      ccGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATa                                                                                                <  1:276354/99‑1 (MQ=255)

            aGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCttt                                                                                         <  2:4345799/100‑1 (MQ=255)

             gACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCttt                                                                                         >  1:3195826/1‑99 (MQ=255)

             gACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCttt                                                                                         >  2:2555747/1‑99 (MQ=255)

              aCCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCa                                                                                       <  2:3596487/100‑1 (MQ=255)

               ccTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCAc                                                                                      >  1:2175991/1‑100 (MQ=255)

                cTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACg                                                                                     <  1:5860390/100‑1 (MQ=255)

                cTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACg                                                                                     <  1:831750/100‑1 (MQ=255)

                cTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACg                                                                                     >  2:424510/1‑100 (MQ=255)

                 naGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGc                                                                                    >  2:4138531/2‑100 (MQ=255)

                   gCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGcc                                                                                   <  1:5660769/99‑1 (MQ=255)

                    cACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACGTCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCt                                                                                  >  2:3055990/1‑99 (MQ=255)

                    cACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCt                                                                                           >  2:4431213/1‑90 (MQ=255)

                     aCTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTa                                                                                >  2:2858152/1‑100 (MQ=255)

                     aCTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTa                                                                                <  1:3805950/100‑1 (MQ=255)

                        gACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATcc                                                                             >  1:1678958/1‑100 (MQ=255)

                         aCCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCg                                                                            <  2:4046529/100‑1 (MQ=255)

                         aCCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCGTGAAAGCCTTATcc                                                                             <  1:1003281/99‑1 (MQ=39)

                         aCCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCGTGAAAGCCTTATCCg                                                                            <  2:2670919/100‑1 (MQ=38)

                          ccATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCGTGAAAGCCTTATCCgt                                                                           <  1:1348564/100‑2 (MQ=38)

                          ccATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCCCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGa                                                                           >  1:4983683/1‑100 (MQ=255)

                           cATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGac                                                                          <  1:4002711/100‑1 (MQ=255)

                              ttCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGacaa                                                                        >  2:657296/1‑99 (MQ=255)

                               tCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGacaac                                                                       >  1:4101762/1‑99 (MQ=255)

                               tCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGacaac                                                                       <  1:1757888/99‑1 (MQ=255)

                               tCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGacaac                                                                       <  2:1668576/99‑1 (MQ=255)

                               tCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGaca                                                                         <  2:3273754/97‑1 (MQ=255)

                                 aGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACaacaac                                                                    <  2:2774856/100‑1 (MQ=255)

                                 aGCGCGTCGCGTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGAcaacaa                                                                     <  2:2983217/99‑1 (MQ=255)

                                     cgTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGcc                                                                <  1:3398175/100‑1 (MQ=255)

                                     cgTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGcc                                                                <  2:5255146/100‑1 (MQ=255)

                                     cgTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGcc                                                                <  1:1947822/100‑1 (MQ=255)

                                     cgTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGcc                                                                <  1:1229793/100‑1 (MQ=255)

                                      gTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCt                                                               <  2:1455644/100‑1 (MQ=255)

                                       tCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCt                                                               <  2:2273075/99‑1 (MQ=255)

                                         gCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGAt                                                            <  2:78632/100‑1 (MQ=255)

                                          cTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATg                                                           <  2:5065179/100‑1 (MQ=255)

                                                caccaATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATacgacg                                                      >  2:4650057/1‑99 (MQ=255)

                                                     aTGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTg                                                   <  2:4960978/97‑1 (MQ=255)

                                                     aTGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGAcg                                                <  1:239082/100‑1 (MQ=255)

                                                       gtatCTTTTTAATGATACCCATGGGGATCTTCCTCATTCCCGTACTGATAAGACTGTCACGCCCTATCCGACAACAACTGCCTGATGCGa                                                        >  2:5868642/4‑90 (MQ=255)

                                                        tttCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGAcgcg                                              <  2:2015346/99‑1 (MQ=255)

                                                         ttCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTc                                            >  2:3512726/1‑100 (MQ=255)

                                                           cTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCt                                           <  1:1123805/99‑1 (MQ=255)

                                                            tttttAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTa                                         >  1:4857852/1‑100 (MQ=255)

                                                              tttAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATcc                                                                             <  1:2529841/62‑1 (MQ=255)

                                                              tttAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTa                                         <  2:3356270/98‑1 (MQ=255)

                                                                tAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCa                                      <  2:1940972/99‑1 (MQ=255)

                                                                tAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAg                                     >  1:4235659/1‑100 (MQ=255)

                                                                 aaTGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGa                                                        <  1:4750932/80‑1 (MQ=255)

                                                                 aaTGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAgg                                    >  2:906395/1‑100 (MQ=255)

                                                                 aaTGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAg                                     <  1:2062487/99‑1 (MQ=255)

                                                                  aTGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                   >  2:5382994/1‑100 (MQ=255)

                                                                  aTGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                   >  1:3903397/1‑100 (MQ=255)

                                                                   tGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGcc                                  >  1:5437935/1‑100 (MQ=255)

                                                                   tGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                   >  1:3700207/1‑99 (MQ=255)

                                                                    gACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGcc                                  >  2:5742960/1‑99 (MQ=255)

                                                                     aCATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCGTGAAAGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTa                                <  2:2168229/100‑1 (MQ=37)

                                                                      cATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTa                                >  1:3298566/1‑99 (MQ=255)

                                                                      cATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTa                                >  1:35249/1‑99 (MQ=255)

                                                                      cATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTa                                >  1:5105035/1‑99 (MQ=255)

                                                                      cATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAc                               <  2:1060539/100‑1 (MQ=255)

                                                                      cATCCATGGGGTTCTCCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTa                                >  1:2874446/1‑99 (MQ=255)

                                                                         ccATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAtc                            >  2:3696295/1‑99 (MQ=255)

                                                                          cATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATAc                           <  1:4329724/100‑1 (MQ=255)

                                                                              gggTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACg                          <  2:5519006/97‑1 (MQ=255)

                                                                              gggTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGttt                       <  1:598860/100‑1 (MQ=255)

                                                                              gggTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGtt                        <  1:4634144/99‑1 (MQ=255)

                                                                               ggTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTc                      <  2:5978788/100‑1 (MQ=255)

                                                                               ggTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTc                      >  2:1850029/1‑100 (MQ=255)

                                                                                  tcttcCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGt                   >  1:3091535/1‑100 (MQ=255)

                                                                                   cttcCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGtt                  >  1:5334367/1‑100 (MQ=255)

                                                                                   cttcCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGt                   <  1:4439531/99‑1 (MQ=255)

                                                                                      ccTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTc                                            >  2:1301093/1‑71 (MQ=255)

                                                                                      ccTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGtttt                <  2:2376329/99‑1 (MQ=255)

                                                                                      ccTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGtttt                <  2:1761209/99‑1 (MQ=255)

                                                                                      ccTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTg               >  2:3914520/1‑100 (MQ=255)

                                                                                      ccTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTg               >  2:3776510/1‑100 (MQ=255)

                                                                                         cATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAg            >  2:2466291/1‑100 (MQ=255)

                                                                                          aTTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTa             <  1:949458/98‑1 (MQ=255)

                                                                                           ttCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGc          <  1:2288450/100‑1 (MQ=255)

                                                                                           ttCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGc          >  1:4546128/1‑100 (MQ=255)

                                                                                             ccAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGc          >  2:5185121/1‑98 (MQ=255)

                                                                                             ccAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCg        >  1:2644053/1‑100 (MQ=255)

                                                                                             ccAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCg        >  1:5774610/1‑100 (MQ=255)

                                                                                             ccAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCg        >  2:3151444/1‑100 (MQ=255)

                                                                                              cAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGcc         >  2:4732756/1‑98 (MQ=255)

                                                                                              cAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCgg       <  1:714214/100‑1 (MQ=255)

                                                                                              cAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCg        >  1:3591094/1‑99 (MQ=255)

                                                                                                   cGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAg  <  1:1456097/100‑1 (MQ=255)

AGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAG  >  NC_000913_3_hsa_pgi/4245027‑4245225

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.