New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_pgi = 42466992877 (11.870)198 (0.860) 42/184 9.8 6.6% intergenic (‑252/‑113) malE/malK maltose transporter subunit/maltose ABC transportor ATPase
?NC_000913_3_hsa_pgi = 4246723 2867 (12.470)intergenic (‑276/‑89) malE/malK maltose transporter subunit/maltose ABC transportor ATPase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 3024 total aligned reads displayed.

TGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGCGT  >  NC_000913_3_hsa_pgi/4246624‑4246822
                                                                                                   |                                                                                                   
tGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGt                                                                                                     >  1:1115944/1‑100 (MQ=255)
 gcaagcaaCATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTg                                                                                                    >  2:2235645/1‑100 (MQ=255)
 gcaagcaaCATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTg                                                                                                    >  1:3814727/1‑100 (MQ=255)
      caaCATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTg                                                                                                    <  1:3919720/95‑1 (MQ=255)
       aaCATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGAt                                                                                              >  2:4900415/1‑100 (MQ=255)
        aCATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGAtt                                                                                             >  2:3011168/1‑100 (MQ=255)
           tCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGAttt                                                                                            >  1:1745963/1‑98 (MQ=255)
           tCACGAAATTCATTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCGCCCCCATAAAAAAGCCAGGGGGTGGAGGAttt                                                                                            >  2:5034602/1‑98 (MQ=255)
            cACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAg                                                                                         >  1:2046033/1‑100 (MQ=255)
             aCGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAg                                                                                         <  1:5218069/99‑1 (MQ=255)
             aCGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAg                                                                                         <  2:2471887/99‑1 (MQ=255)
             aCGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAg                                                                                         <  2:3715975/99‑1 (MQ=255)
             aCGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGc                                                                                        >  1:631163/1‑100 (MQ=255)
              cGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGCATTTAAGc                                                                                        >  2:4785797/1‑99 (MQ=255)
              cGAAATGCCCAACAGGACCTCGGTATAGTACACAGAAGCAGTGTTCTCTTCCTCCCGCTTAAAAAAAAAAAAAAAAGCCAGGGGGTGGAGGATTTAAGcg                                                                                       <  2:5553167/100‑2 (MQ=255)
                      cTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTGCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCt                                                                                >  2:5821773/1‑99 (MQ=255)
                      cTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAg                                                                                         <  1:5724086/90‑1 (MQ=255)
                      cTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCt                                                                                >  2:4414657/1‑99 (MQ=255)
                      cTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCt                                                                                <  2:3287972/99‑1 (MQ=255)
                      cTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCt                                                                                >  2:5691037/1‑99 (MQ=255)
                          cATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCtgatg                                                                            <  2:4318077/99‑1 (MQ=255)
                          cATGACCGCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCtgat                                                                             >  2:118742/1‑98 (MQ=255)
                            tGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACg                                                                         >  1:414444/1‑100 (MQ=255)
                              aCCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCa                                                                       <  2:2806010/100‑1 (MQ=255)
                                ntCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCt                                                                                >  1:219063/2‑89 (MQ=255)
                                cTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTggagg                                                                                                <  2:1499428/73‑1 (MQ=255)
                                 tCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAg                                                                    >  1:5911254/1‑100 (MQ=255)
                                  cGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGt                                                                   >  1:986971/1‑100 (MQ=255)
                                   ggTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGt                                                                   >  1:2400010/1‑99 (MQ=255)
                                   ggTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTc                                                                  <  1:4009426/100‑1 (MQ=255)
                                    gTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGt                                                                   >  1:3563264/1‑98 (MQ=255)
                                    gTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGt                                                                   >  2:5133213/1‑98 (MQ=255)
                                    gTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCa                                                                 <  2:630015/100‑1 (MQ=255)
                                       tAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGc                                                               <  1:1544068/99‑1 (MQ=255)
                                       tAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCAGCTCCTGATGACGCATAGTCAGc                                                               <  1:1837025/99‑1 (MQ=255)
                                        aGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGcc                                                              <  1:4274465/99‑1 (MQ=255)
                                         gTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCca                                                            <  1:142762/100‑1 (MQ=255)
                                         gTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCca                                                            >  2:5223033/1‑100 (MQ=255)
                                          ttCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCcat                                                           >  2:866898/1‑100 (MQ=255)
                                          ttCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCca                                                            <  2:4597856/99‑1 (MQ=255)
                                            cacaGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCcatca                                                         >  1:5348855/1‑100 (MQ=255)
                                            cacaGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCcatca                                                         >  1:1001860/1‑100 (MQ=255)
                                            cacaGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCcatca                                                         >  2:2691555/1‑100 (MQ=255)
                                             acaGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCcatca                                                         <  1:469799/99‑1 (MQ=255)
                                              caGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCcatcat                                                        >  1:3302728/1‑99 (MQ=255)
                                              caGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCcatcat                                                        >  1:4797551/1‑99 (MQ=255)
                                              caGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCcatcat                                                        >  1:1616584/1‑99 (MQ=255)
                                              caGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCcatcat                                                        >  1:1930253/1‑99 (MQ=255)
                                              caGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCcatcat                                                        >  2:2006863/1‑99 (MQ=255)
                                                gatgCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGaa                                                     <  1:4588682/97‑1 (MQ=255)
                                                gAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATTaa                                                     >  1:5580880/1‑100 (MQ=255)
                                                gAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGaa                                                     >  2:4692790/1‑100 (MQ=255)
                                                gAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGaa                                                     >  1:2753271/1‑100 (MQ=255)
                                                gAAGCCGTGTTCTCATCCTCCCGCCTCCCCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGaa                                                     >  2:424148/1‑100 (MQ=255)
                                                   gCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGt                                                  >  2:3407032/1‑100 (MQ=255)
                                                     cGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTg                                                <  1:2302796/100‑1 (MQ=255)
                                                     cGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTg                                                >  2:5452062/1‑100 (MQ=255)
                                                     cGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTg                                                >  1:3460156/1‑100 (MQ=255)
                                                       tgtTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCt                                              >  2:1631380/1‑100 (MQ=255)
                                                       tgtTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCt                                              >  2:1914731/1‑100 (MQ=255)
                                                        gtTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTg                                             >  1:1309882/1‑100 (MQ=255)
                                                         ttCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTg                                             <  1:3383900/99‑1 (MQ=255)
                                                         ttCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGt                                            >  2:1712081/1‑100 (MQ=255)
                                                          tctcATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGCGGATTTAAGCCATCTCCTGATGACGCATAATCATCCCATCATGAATGTTCCTGTc                                           >  2:5905514/1‑100 (MQ=255)
                                                          tctcATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTc                                           >  1:3201465/1‑100 (MQ=255)
                                                            tcATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAg                                                                                         <  1:5805767/52‑1 (MQ=255)
                                                                cctccCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGa                                      >  1:3091916/1‑99 (MQ=255)
                                                                 ctccCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGa                                      >  1:3699680/1‑98 (MQ=255)
                                                                 ctccCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGa                                      >  1:881127/1‑98 (MQ=255)
                                                                 ctccCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGAc                                     <  2:1074453/99‑1 (MQ=255)
                                                                   ctcGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAgg                                  >  1:5056649/3‑100 (MQ=255)
                                                                    ccGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCATCCCATCATGAATGTTGCTGTCGATGACAGgt                                 <  2:3929564/100‑1 (MQ=255)
                                                                    ccGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGgt                                 <  2:745449/100‑1 (MQ=255)
                                                                      gCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGgttg                               >  2:2111610/1‑100 (MQ=255)
                                                                      gCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGgttg                               <  2:3849430/100‑1 (MQ=255)
                                                                           ctccCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTa                            <  2:3123191/98‑1 (MQ=255)
                                                                           ctccCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTAc                           >  2:1395071/1‑99 (MQ=255)
                                                                           ctccCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTAc                           <  1:2991920/99‑1 (MQ=255)
                                                                           ctccCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTAc                           <  1:120077/99‑1 (MQ=255)
                                                                              ccccATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAg                       >  1:5452101/1‑100 (MQ=255)
                                                                               cccATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAgg                      <  1:747948/100‑1 (MQ=255)
                                                                               cccATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAgg                      <  1:491042/100‑1 (MQ=255)
                                                                                ccATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAgg                      >  2:5352845/1‑99 (MQ=255)
                                                                                ccATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAgg                      >  2:2586221/1‑99 (MQ=255)
                                                                                 cATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGga                    <  1:5138219/100‑1 (MQ=255)
                                                                                 cATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGga                    <  2:4513638/100‑1 (MQ=255)
                                                                                 cATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGga                    <  2:2906985/100‑1 (MQ=255)
                                                                                  aTAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGgag                   <  1:2486997/100‑1 (MQ=255)
                                                                                   tAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGgag                   <  2:361935/99‑1 (MQ=255)
                                                                                     aaaaaGCCAGGGGGAGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAg                >  1:4372410/1‑100 (MQ=255)
                                                                                         aGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCa            >  1:2872264/1‑100 (MQ=255)
                                                                                            cAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATgg         <  1:4493279/100‑1 (MQ=255)
                                                                                            cAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATgg         >  2:4139040/1‑100 (MQ=255)
                                                                                            cAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATgg         >  2:3223656/1‑100 (MQ=255)
                                                                                             aGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATg          >  2:4018932/1‑98 (MQ=255)
                                                                                              gggggTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGc        <  1:2610198/99‑1 (MQ=255)
                                                                                                gggTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAg     <  2:3516042/100‑1 (MQ=255)
                                                                                                 ggTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGc    >  2:2329511/1‑100 (MQ=255)
                                                                                                  gTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGCg   <  2:127314/100‑1 (MQ=255)
                                                                                                  gTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGCg   <  2:1813320/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
TGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGCGT  >  NC_000913_3_hsa_pgi/4246624‑4246822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.