New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_pgi 4218934 =645 (11.450)13 (0.240) 12/264 3.9 2.1% coding (339/1737 nt) aceK isocitrate dehydrogenase kinase/phosphatase
?NC_000913_3_hsa_pgi 4218956 = 601 (11.230)coding (361/1737 nt) aceK isocitrate dehydrogenase kinase/phosphatase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 650 total aligned reads displayed.

AACTGCGCTGCATTACTAACGGCCAAAGTACGGACGCGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGC  >  NC_000913_3_hsa_pgi/4218786‑4219082
                                                                                                                                                    |                                                                                                                                                    
 aCTGCGCTGCATTACTAACGGCCAAAGTACGGACGCGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGaccacc                                                                                                                                                     >  1:268046/1‑149 (MQ=255)
   tGCGCTGCATTACTAACGGCCAAAGTACGGACGCGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACGCGCGCTTCGACATTGCGCAGAGCATTTTTACCTCCGTGTACTGTAGGTTATTTGACCACcgc                                                                                                                                                   >  1:882885/1‑149 (MQ=255)
    ccgcTGCATTACTAACGGCCAGAGTACGGACTCAGCATTTTTACTACGTGTTAAAGAGCATTACACACGGCTGTTGCCGCATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACcgct                                                                                                                                                  <  1:14053/148‑1 (MQ=255)
      gcTGCATTACTAACTGCAACAGTACTGACGGTGCATTTTGACGACGTGGTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTTGAGATTGCGGGGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACcgctcg                                                                                                                                                <  2:247248/149‑1 (MQ=255)
       cTGCATTACTAACGGCCAAAGTACGTACGGTGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACcgctcgc                                                                                                                                               <  1:807933/149‑1 (MQ=255)
        tGCATTACTAACGGCCAAAGTACGGACGCGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACACCcgctcgct                                                                                                                                              >  1:512416/1‑149 (MQ=255)
               cTAACGGCCAAAGTACGGACGCGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCGTTTTTAACTCCGTGTACTGTCGGTTCTTTGACCACCGCTCGCGTGCTccc                                                                                                                                       >  1:600591/1‑149 (MQ=255)
                tAACGGCCAAAGTACGGACGCGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCg                                                                                                                                      >  1:318183/1‑149 (MQ=255)
                 aaCGGCCTAAGTACGGACGCGGCATTTTTACGTCGTGTTGACGAGCATTCCACCCGGCTGTTGCCGAATTACCCGCGCTTCCAGATTGCGTACAGCTTTTTTCGCTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGa                                                                                                                                     <  2:383408/149‑1 (MQ=255)
                   cGGCCAAAGTACGGACGCGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGc                                                                                                                                   <  1:446041/149‑1 (MQ=255)
                     gCCAAAGTACGGACGCGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTNACGNCCGCTCGCTTATTCCCGAGCgg                                                                                                                                 >  1:827238/1‑149 (MQ=255)
                     gCCAAAGTACGGACGCGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCgg                                                                                                                                 >  1:772115/1‑149 (MQ=255)
                         cgagaacgACGCGGCATTGTTACTACGGGTTCAAGAGCACTACTCTCGGCTGTTGTCGCATTACCCGTGCTTCGAGATTGCGGAGAGCTCTTTTAACTCCGTGTACCGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCttt                                                                                                                             <  2:149794/142‑1 (MQ=255)
                         aaGTACGGACGCGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACcgctcgc                                                                                                                                               >  2:114868/1‑131 (MQ=255)
                         aaGTACGGACGCGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCttt                                                                                                                             <  1:625901/149‑1 (MQ=255)
                         aaGCACGGACGCGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCttt                                                                                                                             <  1:680224/149‑1 (MQ=255)
                           gTACGGACGCGTCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCttttt                                                                                                                           <  2:835276/149‑1 (MQ=255)
                           gTACGGACGCGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCttttt                                                                                                                           <  2:131145/149‑1 (MQ=255)
                            tACGGACGCGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTa                                                                                                                          <  2:278676/149‑1 (MQ=255)
                            tACGGACGCGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGAATGCGGAGAGCTTTTTTAACTCCGCGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCGTCTTa                                                                                                                          >  1:689464/1‑149 (MQ=255)
                             aCGGACGCGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTCGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTAt                                                                                                                         <  2:470559/149‑1 (MQ=255)
                              cGGACGCGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATc                                                                                                                        <  1:187270/149‑1 (MQ=255)
                               ggACGCGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCt                                                                                                                       >  2:547459/1‑149 (MQ=255)
                                  cgcgGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTGCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTa                                                                                                                    <  1:656418/149‑1 (MQ=255)
                                   gcgGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAg                                                                                                                   <  1:756937/149‑1 (MQ=255)
                                   gcgGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAg                                                                                                                   <  1:892538/149‑1 (MQ=255)
                                   gcgGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAg                                                                                                                   <  2:502313/149‑1 (MQ=255)
                                   gcgGCATTTTTACTACGTGTTAAAGACCATAGCACGCTGCTATTACGGATTTATTCGTGCTTCTAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAg                                                                                                                   <  1:229481/149‑1 (MQ=255)
                                        atgtttACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCtctc                                                                                                              <  2:726360/146‑1 (MQ=255)
                                         tttttACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCa                                                                                                             <  2:949241/149‑1 (MQ=255)
                                         tttttACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCa                                                                                                             >  1:531494/1‑149 (MQ=255)
                                           tttACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCGGAGCGGCTTTTTATCTTTAGCTCTCAGc                                                                                                           >  1:346972/1‑149 (MQ=255)
                                             tactgcGTGTTAAAGAGCATTACACCGGGCTGTTGCCGGATTACGCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCa                                                                                                         <  2:347005/149‑1 (MQ=255)
                                             tactacGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCTAGATTGCGGAGAGCTTTTTTAACTCCGTATACTCCCGGGTATCAGAAGCACTCGCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCa                                                                                                         <  1:739292/149‑1 (MQ=255)
                                             tactacGTGTTAAACAGCATTTCACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAATTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCa                                                                                                         <  2:982514/149‑1 (MQ=255)
                                                 acttgtTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCTAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAgc                                                                                                     <  2:626335/146‑1 (MQ=255)
                                                 acGTGTTAAAGAGCATTACACCCGGCTGGTGCCGGATTACCCGCGCTTCGAGAGTGCGGAGAGCTTTTTTACCTCCGTGTACTGGCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTGGCTCTCAGCCAGAgc                                                                                                     <  1:258274/149‑1 (MQ=255)
                                                   gtgtTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCtt                                                                                                                      <  1:409225/130‑1 (MQ=255)
                                                        aaaGAGCATTACACCCGTCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCtt                                                                                              <  2:67623/149‑1 (MQ=255)
                                                        aaaGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGGTATTTGACCACCGCTCGCTTACTCCCGAGCCGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCtt                                                                                              >  2:890561/1‑149 (MQ=255)
                                                           gagCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTATCTTCGTTTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCCGCCCGAGCGCCCCTTTcc                                                                                           >  2:267915/1‑148 (MQ=255)
                                                              cATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTAc                                                                                        <  2:299943/149‑1 (MQ=255)
                                                              cATTACACCCGGCTGGTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTAc                                                                                        <  2:558097/149‑1 (MQ=255)
                                                                  acacCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCAtt                                                                                    <  1:794600/149‑1 (MQ=255)
                                                                  acacCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCAtt                                                                                    <  1:365165/149‑1 (MQ=255)
                                                                    acCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCAGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCTCTTTCGTCGCATTcc                                                                                  >  1:86525/1‑149 (MQ=255)
                                                                      ccGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGCGCGCCGCTTTCGTACCATTcccc                                                                                >  2:49199/1‑149 (MQ=255)
                                                                       cGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCcccg                                                                               >  2:758019/1‑149 (MQ=255)
                                                                       cGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCAGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCaga                                                                                                       <  2:532224/125‑1 (MQ=255)
                                                                           tGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCcccgcccg                                                                           >  1:639611/1‑149 (MQ=255)
                                                                             ttGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTa                                                                                                                    >  1:554135/1‑106 (MQ=255)
                                                                               gCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTgg                                                                       <  2:189096/149‑1 (MQ=255)
                                                                                 cGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTc                                                                                            <  1:162204/126‑1 (MQ=255)
                                                                                 cGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTc                                                                                            >  2:162204/1‑126 (MQ=255)
                                                                                 cGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTc                                                                                            >  2:658492/1‑126 (MQ=255)
                                                                                   gATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTCCTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTAc                                                                                        >  1:378573/1‑128 (MQ=255)
                                                                                    aTTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCTGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGaaa                                                                  <  1:482644/149‑1 (MQ=255)
                                                                                      tACCCGCGGTTCGGGATGGCGGAGAGCTTTTTTAACTCCGTTTACTGTCGGTTATTTGACCCTCGCTCGCTTCCTCCCGAGCGGTTTTTTCTCTTTAGCTGTCAGCCAGAGCGCCGCGTTCGTACCATTCCCCGCCCGCTGGCGAAAGa                                                                <  2:233069/149‑1 (MQ=255)
                                                                                      tACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGa                                                                <  2:801036/149‑1 (MQ=255)
                                                                                        cccGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACt                                                              <  1:582169/149‑1 (MQ=255)
                                                                                         ccGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACtt                                                             >  1:307119/1‑149 (MQ=255)
                                                                                         ccGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTCTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCCTTCCCCGCCCGCTGGCGaaaagctt                                                             >  2:32927/1‑144 (MQ=255)
                                                                                             gcTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCttt                                                                                                                             >  1:669170/1‑81 (MQ=255)
                                                                                                  gagaTTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGaaa                                                                  >  2:207640/1‑135 (MQ=255)
                                                                                                  gagaTTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGaaa                                                                  <  1:207640/135‑1 (MQ=255)
                                                                                                  gagaTTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGa                                                    >  2:977283/1‑149 (MQ=255)
                                                                                                    gaTTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATc                                                  <  2:45273/149‑1 (MQ=255)
                                                                                                      ttGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCtt                                                                                                                      >  2:783014/1‑79 (MQ=255)
                                                                                                           gagaGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTg                                           <  1:968896/149‑1 (MQ=255)
                                                                                                           gagaGCTTTTTCAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTGTTCCCGAGCGGCTTTTTATCTTTAGCGCTCAGCCAGATCGTCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTg                                           <  1:388336/149‑1 (MQ=255)
                                                                                                            gacgtgtttctAACTGCGTGGAGGGTCGGTTATTGGACCACCGTTCGCTTATTCCCGAGCGGATGTTTAACTTTGACTTGCAGCCAGAGCGGCGCTTTCGTACCATGCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCATGGCTgg                                          <  2:366394/143‑1 (MQ=255)
                                                                                                            agagCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCCCCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTgg                                          >  1:899309/1‑149 (MQ=255)
                                                                                                              agCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGa                                        >  1:926094/1‑149 (MQ=255)
                                                                                                                cTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTCCTCCGGAGCGGCTTTTTATCTTTTGCTCTCAGCCAGAGCGCCGCTTTGGTACCATTCTCGGCCCGCTGGCGAAAGACTTTCACCCGGTTCACGGCTGGGagt                                      >  2:377807/1‑147 (MQ=255)
                                                                                                                 ttttttAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTTGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCACGCTGGCGACAGACTTTCCCCCCGATCACGGCTGGGAGtc                                     >  2:403143/1‑149 (MQ=255)
                                                                                                                 ttttttAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGaacc                                     >  2:309790/1‑147 (MQ=255)
                                                                                                                 ttttttAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAAtc                                     >  2:608013/1‑149 (MQ=255)
                                                                                                                  tttttAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCGTTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGGAttg                                    >  1:457371/1‑147 (MQ=255)
                                                                                                                     ttAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAAACTCTa                                 <  2:866170/149‑1 (MQ=255)
                                                                                                                      taccgccGCGTACTGTCGGGTGCGTGACCACCGCTCGCTTCCTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTAc                                <  1:710595/144‑1 (MQ=255)
                                                                                                                      tAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTAc                                <  2:651161/149‑1 (MQ=255)
                                                                                                                          tCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGCATCTCTACTGAt                            >  2:882208/1‑149 (MQ=255)
                                                                                                                          tCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTa                                 <  1:94806/144‑1 (MQ=255)
                                                                                                                             gtgtACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCGGGTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGAtcgc                         >  2:421563/1‑146 (MQ=255)
                                                                                                                              tgtACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATgcgc                        <  1:839685/149‑1 (MQ=255)
                                                                                                                                 aCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTCCTGACGCGTGtt                     >  2:437433/1‑149 (MQ=255)
                                                                                                                                 aCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGtt                     <  2:699293/149‑1 (MQ=255)
                                                                                                                                 aCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCAATCACGCCTGGGAATATCTACTGATGCGCGtt                     >  2:851979/1‑149 (MQ=255)
                                                                                                                                     tCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACgg                                              >  1:612987/1‑120 (MQ=255)
                                                                                                                                       ggTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGc               <  2:899309/149‑1 (MQ=255)
                                                                                                                                        gTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCg              >  1:100989/1‑149 (MQ=255)
                                                                                                                                         ttATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTTTACTGATGCGCGTTATCAGCGa             >  1:473973/1‑149 (MQ=255)
                                                                                                                                          tATTTGACCACCGCTCGCTTACTCCCGCGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGAc            <  1:153564/149‑1 (MQ=255)
                                                                                                                                          tATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCCCGTTATCAGCGAc            <  1:128432/149‑1 (MQ=255)
                                                                                                                                          tATTTGACCAACGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGAc            <  1:497252/149‑1 (MQ=255)
                                                                                                                                             ttGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTa         <  2:927382/149‑1 (MQ=255)
                                                                                                                                              tGACCACCGCTCGCTTCCTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCGCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTAc        <  2:821405/149‑1 (MQ=255)
                                                                                                                                               gACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTAcc       >  2:745773/1‑149 (MQ=255)
                                                                                                                                               gACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATAATAAGCGCTCAGCCCGACCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTCCTGATGCGCGTTATCAGCGACCTAcc       >  1:986058/1‑149 (MQ=255)
                                                                                                                                                  caccGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCATTATAAGCGACCTACCGct    >  2:581474/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
AACTGCGCTGCATTACTAACGGCCAAAGTACGGACGCGGCATTTTTACTACGTGTTAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGC  >  NC_000913_3_hsa_pgi/4218786‑4219082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.