New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_pgi 4240185 =NA (NA)28 (0.440) 17/266 3.6 NA noncoding (1/37 nt) REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913_3_hsa_pgi 4240218 = NA (NA)noncoding (34/37 nt) REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 898 total aligned reads displayed.

AGCAAAATAAGGCTTCATTTTTACCACCTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTTATACAGGAAGCTCGCCAC  >  NC_000913_3_hsa_pgi/4240036‑4240334
                                                                                                                                                     |                                                                                                                                                     
  caAAATAAGGCTTCATTTTTACCACCTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGcc                                                                                                                                                     <  2:1084929/150‑1 (MQ=255)
  caAAATAAGGCTTCATTTTTACCACCTTTATCAGGTGACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGcc                                                                                                                                                     <  1:86870/150‑1 (MQ=255)
  aaaatTAAGGCTTCATTTCTAACACCTTTATGCGGTTACGTTTCATTTGTACCAAAGGAACATGGTCGAGTTTTCGCGCATTGCTGGTGGCTGGGAAGCTCCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGcc                                                                                                                                                     <  1:575338/149‑1 (MQ=255)
    aaaTAAGGCTTCATGTTTACCACCTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGCAATCACATGTATTGGAGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCgg                                                                                                                                                   >  2:842922/1‑150 (MQ=255)
     aaTAAGGCTTCATTTTTACCACCTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGa                                                                                                                                                  <  2:941377/150‑1 (MQ=255)
     aaTAAGGCTTCATTTTTACCACCTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGa                                                                                                                                                  <  2:352761/150‑1 (MQ=255)
      aTAAGGCGTCATTTTTACCACCTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATGTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGAt                                                                                                                                                 <  1:307598/150‑1 (MQ=255)
              tCATTTTTACCACCTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCgccccc                                                                                                                                         >  2:766209/1‑150 (MQ=255)
               cATTTTTACCACCTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCa                                                                                                                                        <  1:552664/150‑1 (MQ=255)
                aTTTTTACTTCCTTTTTCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATTGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGTTGCgccgcctg                                                                                                                                       >  2:709099/1‑148 (MQ=255)
                 ttaatACCACCTATATCAGGTTACGTTTCATTTGTTCCAGAGGGACATTGTCGATTTTTCGCGCATTGCTGGTGACGGGGAATCACCTGAATGGGTGAGCTTTGGATTACCGGCTTTGGAGCGATTTGTCTTTCCGGTGGCgccgcccgt                                                                                                                                      >  2:518178/5‑147 (MQ=255)
                    ttACCACCTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATAagccgcgcctggc                                                                                                                                   <  2:112124/150‑8 (MQ=255)
                       ccaccTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGc                                                                                                                                <  1:97027/150‑1 (MQ=255)
                           cTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAAAATGTATTACTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGGTGCGGCGCCAGGCGCGGCTTAt                                                                                                                            >  1:586031/1‑150 (MQ=255)
                            tttATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATc                                                                                                                           <  1:466503/150‑1 (MQ=255)
                            tttATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATc                                                                                                                           >  2:1008000/1‑150 (MQ=255)
                              tATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCg                                                                                                                         <  1:355583/150‑1 (MQ=255)
                                tCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGTCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTACCCGGc                                                                                                                       <  2:1029934/150‑1 (MQ=255)
                                  cggTTACGTTTCATTTGTTCCAGAGGAACAGTGTCGATTTTTCGCGCATTGCTGGTGGCTCGGAATTACCTGAATCGGTGATTTTTGAATTACCGTCCTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCt                                                                                                                     <  1:709509/149‑1 (MQ=255)
                                   ggTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTTGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCg                                                                                                                                                    <  1:927108/118‑1 (MQ=255)
                                    gTTACGTTTTTTTTGTTCCAGAGGAACATTGTCGATTTTTCGGGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTAc                                                                                                                   <  1:22359/150‑1 (MQ=255)
                                     ttACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACg                                                                                                                  <  2:115960/150‑1 (MQ=255)
                                       aCGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACggg                                                                                                                <  1:911690/150‑1 (MQ=255)
                                         gTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGggta                                                                                                              >  1:835656/1‑150 (MQ=255)
                                          tttCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGc                                                                                                                                <  2:499941/131‑1 (MQ=255)
                                          tttCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGggtag                                                                                                             <  1:597683/150‑1 (MQ=255)
                                          tttCAATTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGggtag                                                                                                             <  2:891507/150‑1 (MQ=255)
                                            ttaTTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGggtaggt                                                                                                           <  2:1048901/148‑1 (MQ=255)
                                              aTTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCg                                                                                                                                                    >  1:1106581/1‑107 (MQ=255)
                                                ttGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTatat                                                                                                       >  1:78296/1‑150 (MQ=255)
                                                  gTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGc                                                                                                                                <  1:1003164/123‑1 (MQ=255)
                                                   ttCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCg                                                                                                    >  1:629017/1‑150 (MQ=255)
                                                      cAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCg                                                                                                                         <  2:1180119/126‑1 (MQ=255)
                                                      cAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCg                                                                                                                         >  1:1180119/1‑126 (MQ=255)
                                                       agagGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGGATGGGAGAGTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATTCGTCTTGGGGCGCGGCTTGTGGTGCCTGGGGGTAGGTATGTCCGGcgt                                                                                                >  1:991476/1‑148 (MQ=255)
                                                       agagGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCtt                                                                                                <  1:256592/150‑1 (MQ=255)
                                                       agagGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTACGATCTGGGTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCAGCCTCCGGGTAGGGCTATcacgcct                                                                                                >  1:277786/1‑144 (MQ=255)
                                                         agGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTtg                                                                                              <  1:208684/150‑1 (MQ=255)
                                                           gAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTtggt                                                                                            >  1:1078090/1‑150 (MQ=255)
                                                             aCATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCCGCTTAGCCGGCCTACGGGTAGGTATATCCGGCTTtggtgg                                                                                          <  2:797317/150‑1 (MQ=255)
                                                              cATTGGCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTCTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGa                                                                                         <  1:1020457/150‑1 (MQ=255)
                                                              aaTTGTCGATTGTTCGCGCATGGCTGGTGGCTGGGAATCACTTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGa                                                                                         <  2:328789/149‑1 (MQ=255)
                                                                  gTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGggtag                                                                                                             <  1:290994/126‑1 (MQ=255)
                                                                  gTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGgcg                                                                                     <  1:1048654/150‑1 (MQ=255)
                                                                  gTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCCCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTCTCTCCGGATTTTGTGGAGccg                                                                                     >  2:161399/1‑150 (MQ=255)
                                                                   tCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGgcgc                                                                                    >  1:694022/1‑150 (MQ=255)
                                                                   tCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGGGGAGgcgg                                                                                    >  1:162385/1‑149 (MQ=255)
                                                                   tCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCAGAATAGGTGATTTTTGAATTACCGGCTTTGGTGCGTTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGCATATCCGGCTTTGGTGGAGgcgc                                                                                    >  1:1143015/1‑150 (MQ=255)
                                                                     gATTTTTCTTGTATTGCTGGTGGCTGGGACTCCCCAGAAATGGTGATTTGTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCTCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGTTGGACgcgcgc                                                                                  >  2:558226/1‑150 (MQ=255)
                                                                     gATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGgcgcgc                                                                                  >  1:14460/1‑150 (MQ=255)
                                                                                cATTGCTGGTGGCTGGGAATCACCTGAAAGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAg                                                                       <  1:798031/150‑1 (MQ=255)
                                                                                   tGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGtt                                                                    <  1:61162/150‑1 (MQ=255)
                                                                                     cTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGCGGCGCGCTCCGAATCCAGGTTGa                                                                  >  2:781864/1‑150 (MQ=255)
                                                                                     cTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTgg                                                                  >  1:425236/1‑149 (MQ=255)
                                                                                     cTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGCCGTGGGCGCGCTCCAAATACAGGTTgg                                                                  >  2:191303/1‑149 (MQ=255)
                                                                                      tggtggCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGaa                                                                 <  2:667080/150‑1 (MQ=255)
                                                                                      tggtggCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGaa                                                                 <  1:1165072/150‑1 (MQ=255)
                                                                                      gggtggGCGGGAATGAGCTGAGTGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTCCGGGTAGGTATATCCGGCTTTGGGGGAGGCGCGCTCCAAATCCAGGTTGaa                                                                 <  2:205515/149‑1 (MQ=255)
                                                                                       ggtggCTAGGAATCACCTGAATGGTTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAAc                                                                <  2:364287/150‑1 (MQ=255)
                                                                                           gCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACaaaa                                                            <  2:983148/150‑1 (MQ=255)
                                                                                           gCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCACTCCAAATCCAGGGTGAACcaaa                                                            >  2:464268/1‑150 (MQ=255)
                                                                                            cTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCACATCCAGGTTGAACAAAAc                                                           >  1:39410/1‑150 (MQ=255)
                                                                                             tGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACa                                                          >  2:439073/1‑150 (MQ=255)
                                                                                             tGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGGATATCCGGCTTTGGTGGAGGCGCGCTCCAACTCCAGGTTGAACAAAACa                                                          >  1:819342/1‑150 (MQ=255)
                                                                                             tGGGAATCACCTGAATGGGTGACTTTTGAATTACCGGGTTTAGCGCGGATTACCTTCCCGGATCCCCCGACAGGCGCGGCTTATCCGGCCTACGCGTAGGTATATCCAGCTTTGGTTGAGGCGCGCTCCAGATCCGGGTTGAACAAGACa                                                          >  2:282344/1‑150 (MQ=255)
                                                                                              gggAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAt                                                         <  1:189632/150‑1 (MQ=255)
                                                                                                 aaTCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGTCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATaca                                                      <  1:335411/150‑1 (MQ=255)
                                                                                                 aaTCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATaca                                                      >  2:566951/1‑150 (MQ=255)
                                                                                                     aCCTGGATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGCACAAAACATACACaaa                                                  >  2:1098539/1‑150 (MQ=255)
                                                                                                     aCCTGAATGGGTGATTTTTTTTTTTTTTTCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGGCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCATGTTGAACAAAACACTCACaaa                                                  >  2:473114/1‑150 (MQ=255)
                                                                                                      ccTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCCGCTTTGGTGGAGGCGCCCCCCAAATCCAGGTTGAACCAACAATACACaaaa                                                 >  2:867160/1‑150 (MQ=255)
                                                                                                       cTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTtg                                                                                              <  1:496357/104‑1 (MQ=255)
                                                                                                       cTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGCGGCGCGCTCCCAATCCAGGTTGAACAAAACATACACcaaaa                                                >  2:129272/1‑150 (MQ=255)
                                                                                                       cTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACaaaaa                                                >  1:676274/1‑150 (MQ=255)
                                                                                                         tattGGGTGGTTTTTGAATCAGCCGTCTGGGTGTTGTTTGTCTTGCCGGATGCGCCGCTTGGCGCGGCTTATCCGGCCTACGGGTAGTGATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCCGGTTGAACAAAACATACACAAAAAat                                              <  1:518178/147‑1 (MQ=255)
                                                                                                         gAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAg                                                                       >  2:392771/1‑125 (MQ=255)
                                                                                                         gAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAat                                              >  2:953158/1‑150 (MQ=255)
                                                                                                           aTGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAatat                                            <  1:727072/150‑1 (MQ=255)
                                                                                                           aTGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAatat                                            <  1:474916/150‑1 (MQ=255)
                                                                                                           aTGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAatat                                            <  2:906648/150‑1 (MQ=255)
                                                                                                                tGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGggtagg                                                                                                            <  2:427238/81‑1 (MQ=255)
                                                                                                                tGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCaa                                                                             >  2:921652/1‑112 (MQ=255)
                                                                                                                    ttttGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGt                                                                     <  1:883691/116‑1 (MQ=255)
                                                                                                                       tGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTca                                <  2:618929/150‑1 (MQ=255)
                                                                                                                           ttACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATc                                                                          <  2:230290/104‑1 (MQ=255)
                                                                                                                              ccGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACAttttt                         <  2:694022/150‑1 (MQ=255)
                                                                                                                               cGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATTCACAAAAAATATAGATCTCCGTCACAtttttc                        >  2:733049/1‑149 (MQ=255)
                                                                                                                               cGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTg                        >  1:655825/1‑150 (MQ=255)
                                                                                                                               cGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTg                        >  2:826371/1‑150 (MQ=255)
                                                                                                                                ggCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCgg                                                                                                   <  2:267741/74‑1 (MQ=255)
                                                                                                                                 gCTTTTGTGCGGTTTGTCTTGCTGGATGCGCCGCCAGGCGCGGCTTATCCGGGCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCg                      <  1:36336/150‑1 (MQ=255)
                                                                                                                                      ggTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTtata                 <  1:769262/150‑1 (MQ=255)
                                                                                                                                             tttGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTTATACAGGAAg          <  1:439073/150‑1 (MQ=255)
                                                                                                                                               tGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTTATACAGGAAGCt        <  1:89919/150‑1 (MQ=255)
                                                                                                                                                gTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTTATACAGGAAGCTc       <  2:383402/150‑1 (MQ=255)
                                                                                                                                                gTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAAAAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTTATACAGGAAGCTc       <  2:301614/150‑1 (MQ=255)
                                                                                                                                                 tCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGCAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTTATACAGAAAGCTcc      >  2:6044/1‑149 (MQ=255)
                                                                                                                                                   ttGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGggtag                                                                                                             >  2:587816/1‑45 (MQ=255)
                                                                                                                                                   ttGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTca                                <  2:637668/122‑1 (MQ=255)
                                                                                                                                                   ttGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTTATACAGGAAGCTCGcc    >  1:947391/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
AGCAAAATAAGGCTTCATTTTTACCACCTTTATCAGGTTACGTTTCATTTGTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATGCGCCGCCAGGCGCGGCTTATCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTGCGTTATACAGGAAGCTCGCCAC  >  NC_000913_3_hsa_pgi/4240036‑4240334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.