New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_pgi = 4249443NA (NA)29 (0.450) 22/266 2.6 NA noncoding (95/125 nt) REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences
?NC_000913_3_hsa_pgi = 4249473 NA (NA)noncoding (125/125 nt) REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences

Only 100 of 1318 total aligned reads displayed.

GGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCCTCTGTTTATCAGC  >  NC_000913_3_hsa_pgi/4249324‑4249622
                                                                                                                                                     |                                                                                                                                                     
     tCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATaaa                                                                                                                                                  <  1:796817/150‑1 (MQ=255)
        ggtggtAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAc                                                                                                                                               <  1:1140075/150‑1 (MQ=255)
         gtggtAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACa                                                                                                                                              >  1:491835/1‑150 (MQ=255)
          tggtAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAg                                                                                                                                             <  1:187901/150‑1 (MQ=255)
           ggtAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAgg                                                                                                                                            >  2:248002/1‑150 (MQ=255)
            gtAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACCGGt                                                                                                                                           >  2:281461/1‑150 (MQ=255)
            gtAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAggg                                                                                                                                           >  1:60673/1‑149 (MQ=255)
              aaTAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATTTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTg                                                                                                                                         >  1:225191/1‑150 (MQ=255)
              aaTAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTg                                                                                                                                         <  2:943244/150‑1 (MQ=255)
                tAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTc                                                                                                                                       <  1:858590/150‑1 (MQ=255)
                aaGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTc                                                                                                                                       <  1:556256/149‑1 (MQ=255)
                 aGCAAACCCGGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGAGGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCa                                                                                                                                      <  2:507540/150‑1 (MQ=255)
                     aaaCCTGGGCCGGATGAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTAt                                                                                                                                  <  2:639104/150‑1 (MQ=255)
                      aaCCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTGGTCATTGTc                                                                                                                                 >  1:969553/1‑150 (MQ=255)
                         cTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGa                                                                                                                              <  2:616007/150‑1 (MQ=255)
                           gggCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGaaa                                                                                                                            >  2:1014885/1‑150 (MQ=255)
                            ggCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAg                                                                                                                           >  2:442497/1‑150 (MQ=255)
                              ccGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATAAGGCCTACACCGGCTGTCAAATGTAGGCCGCATAAGGCGTTTACGCCGCATCCCGCATAACCACAGGTTCTCATTATCTGGCAggg                                                                                                                         >  2:188267/1‑150 (MQ=21)
                              ccGGACAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAggg                                                                                                                         >  2:756561/1‑150 (MQ=255)
                                 gATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAACAACAGGTTGTCATTATCTGAACGGGCCg                                                                                                                      >  2:569566/1‑150 (MQ=255)
                                 gATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCg                                                                                                                      >  2:659327/1‑150 (MQ=255)
                                     aGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAg                                                                                                                  >  1:578696/1‑150 (MQ=255)
                                       gCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGc                                                                                                                       >  1:143209/1‑143 (MQ=255)
                                           ttACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCctc                                                                                                            <  1:363032/150‑1 (MQ=255)
                                               gccgcATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGAt                                                                                                        >  1:839358/1‑150 (MQ=255)
                                               gccgcATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCCCTGAt                                                                                                        >  2:320210/1‑150 (MQ=255)
                                                gcccATTCGGCAATCAACGGCTGATGCGACGCTTGCGCTGCTTAACAGGCCTACAACGGCTGTCAATTGTAGGCCGGATAAGACGTTTACGCTGCATCCGGCATAAAAACAGGTTGTCTTTCTCTGACAGGGGCGAAAGCCCCTCTGAtt                                                                                                       <  2:929260/147‑1 (MQ=255)
                                                ccgcATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGAtt                                                                                                       >  1:54219/1‑150 (MQ=255)
                                                 cgcATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGccc                                                                                                               >  1:157516/1‑141 (MQ=255)
                                                  gcATTCGGCAACCAACGCCTGCTGATAGGCTGGCGCGGCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTAt                                                                                                     <  2:299498/150‑1 (MQ=38)
                                                   cATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATc                                                                                                    <  2:525486/150‑1 (MQ=255)
                                                   cATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGAGTATc                                                                                                    >  1:1177111/1‑150 (MQ=255)
                                                    aTTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCg                                                                                                   >  1:30410/1‑150 (MQ=255)
                                                     ttCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCgg                                                                                                  <  1:930287/150‑1 (MQ=255)
                                                     ttCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCgg                                                                                                  <  1:67561/150‑1 (MQ=255)
                                                     atCGGCAACCAACGCCTGATGAGACGCTGGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCgg                                                                                                  <  2:1171194/149‑1 (MQ=255)
                                                      gcGGCAACCAACGACTGATGCGACGGTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGGCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCggg                                                                                                 <  2:168771/149‑1 (MQ=255)
                                                       cgccaaccaacGCCGGATGCGACGCCTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGt                                                                                                <  1:1071049/147‑1 (MQ=255)
                                                         gCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGttt                                                                                              >  2:600806/1‑150 (MQ=255)
                                                             ccaacGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAgcg                                                                                          >  1:377403/1‑150 (MQ=255)
                                                              caacGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTCGGCCGGATCAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTGCTCCTTATCTGAAAGGGGCGAAAGCCCCTCTGATTACCGGGTTTAgcgc                                                                                         >  2:976656/1‑150 (MQ=25)
                                                              caacGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGACCGATGCACCGATTATCGGGTTTAgcgc                                                                                         >  2:1127999/1‑150 (MQ=37)
                                                              caacGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAgcgc                                                                                         >  2:956558/1‑150 (MQ=255)
                                                                acGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGaaa                                                                                                                            <  1:470143/113‑1 (MQ=255)
                                                                acGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCACTCTGATTATCGCGTTTAgcgcgc                                                                                       >  2:719833/1‑150 (MQ=255)
                                                                  gCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCa                                                                                                                                      <  1:525730/101‑1 (MQ=255)
                                                                        tGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCt                                                                               <  2:222118/150‑1 (MQ=255)
                                                                        tGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCt                                                                               <  1:1094157/150‑1 (MQ=255)
                                                                        cgCGACGCTTGCGCATCTGATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGGTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCt                                                                               <  1:710481/149‑1 (MQ=255)
                                                                         gCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTg                                                                              >  1:951787/1‑150 (MQ=255)
                                                                         gCGACGCCTGCGCGTCTTATCAGGCCTACCACCGCTGTCACATGTAGGCCTCATAAGGCGTATAAGTTGAACACGTCATAAAATCAGGTCTTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTg                                                                              <  1:281461/150‑1 (MQ=255)
                                                                          cGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGAATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCGATTGCCTgg                                                                             >  1:209620/1‑150 (MQ=255)
                                                                           gACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAACGGGCGCAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGc                                                                            >  1:628426/1‑150 (MQ=255)
                                                                                      gTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGtt                                                                                               <  1:407181/120‑1 (MQ=255)
                                                                                      gTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGc                                                                 >  2:1000964/1‑150 (MQ=255)
                                                                                         ttATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCg                                                                                                   >  1:73526/1‑113 (MQ=255)
                                                                                            tCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTCTTGCCTGGCTACCGCTGGGCTCCTGa                                                           >  2:54109/1‑150 (MQ=255)
                                                                                            tCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGa                                                           >  1:263669/1‑150 (MQ=255)
                                                                                              aGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCAGCATAAAAACAGGATGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCAGGATTAGCGCGCTATAGCCTGGATACCCCCGAGCCCCCGAtt                                                         >  2:332865/1‑150 (MQ=38)
                                                                                               ggCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCctacatttgacagccgttgtaggcctgataagacgcgcaagcgtcgcatcaggcgttggttgccgaa                                                                                    <  2:1149668‑M2/122‑68 (MQ=255)
                                                                                                 ccgaCAACGGCTGGCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTg                                                      <  2:1105173/147‑1 (MQ=255)
                                                                                                 ccTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGaaa                                                                                                                   <  2:267069/89‑1 (MQ=255)
                                                                                                  cTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGa                                                     <  1:646708/150‑1 (MQ=255)
                                                                                                   tACAACGGCTGTCAAATGTAGGCCGGATAAGGCGGTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAg                                                    <  1:101519/150‑1 (MQ=255)
                                                                                                     cAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTcc                                                              >  2:890759/1‑138 (MQ=255)
                                                                                                         ggCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGAGTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGACCTCCGGATTTTGAGGTGaaa                                              >  1:1119871/1‑150 (MQ=255)
                                                                                                          gCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGaaaa                                             <  2:360571/150‑1 (MQ=255)
                                                                                                          gCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGaaaa                                             <  2:377403/150‑1 (MQ=255)
                                                                                                             gTCAAATGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACaa                                          <  2:677227/150‑1 (MQ=255)
                                                                                                             gTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACaa                                          <  2:857994/150‑1 (MQ=255)
                                                                                                                aaaTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCAt                                                                                                                                     <  2:143408/56‑1 (MQ=255)
                                                                                                                aaaTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCACATTTTGAGGTGAAAACaatga                                       >  2:792792/1‑150 (MQ=255)
                                                                                                                   tGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACaatgaaaa                                    <  2:839358/150‑1 (MQ=255)
                                                                                                                   tGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACaatgaaaa                                    >  1:415951/1‑150 (MQ=255)
                                                                                                                       ggacGGAAAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACaatgaaaatgaa                                <  2:396579/147‑1 (MQ=255)
                                                                                                                       ggCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCgg                                                                                                  >  1:33452/1‑84 (MQ=255)
                                                                                                                       ggCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACaatgaaaatgaa                                <  2:912533/150‑1 (MQ=255)
                                                                                                                        gCCGGATAAGGTGTTTACGCCGCAACCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCCAATTTTGAGGTGAAAACaatgaaaacaaat                               <  2:1089083/150‑6 (MQ=255)
                                                                                                                        gCCGGATAAGGCGTTTACGCCGCATCCGGCctacatttgacagccgttgtaggcctgataagacgcgcaagcgtcgcatcaggcgttggttgccgaatgcggcgtaaacgccttatccggcccaggttttgctattaccaccagatttcc                               <  1:243538‑M2/150‑121 (MQ=255)
                                                                                                                        gCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGa                                                           >  2:415362/1‑122 (MQ=255)
                                                                                                                        gCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGt                                                  <  1:87970/131‑1 (MQ=255)
                                                                                                                         ccGGATAAGGCGTTTACGCCGCATCCGGCctacatttgacagccgttgtaggcctgataagacgcgcaagcgtcgcatcaggcgttggttgccgaatgcggcgtaaacgccttatccggcccaggttttgctattaccaccaga                                    <  2:1064765‑M2/144‑116 (MQ=255)
                                                                                                                            gATAAGGCGTTTACGCCGCATCCGGCctacatttgacagccgttgtaggcctgataagacgcgcaagcgtcgcatcaggcgttggttgccgaatgcggcgtaaacgccttatccggcccaggttttgctattaccaccagatttccatct                           >  2:584119‑M2/1‑26 (MQ=255)
                                                                                                                            gATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATaaaa                           <  1:321612/150‑1 (MQ=255)
                                                                                                                            gATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATaaaa                           >  1:814532/1‑150 (MQ=255)
                                                                                                                            gATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATaaaa                           <  1:1000050/150‑1 (MQ=255)
                                                                                                                               aaGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGCGCTCCCGATTTTGAGGTGAAAACAATGAAAATGAATAAACGtc                        >  1:77390/1‑150 (MQ=255)
                                                                                                                                  gCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCACTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCa                     >  2:1033314/1‑150 (MQ=255)
                                                                                                                                       tACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGACAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTc                <  1:756561/150‑1 (MQ=255)
                                                                                                                                          gccgcATCCGGCATAAAAACAGGTTGTCATTATCTGaaa                                                                                                                            <  2:491383/39‑1 (MQ=255)
                                                                                                                                          gccgcATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCctc             >  1:1042472/1‑150 (MQ=255)
                                                                                                                                           ccgcATCCGGCctacatttgacagccgttgtaggcctgataagacgcgcaagcgtcgcatcaggcgttggttgccgaatgcggcgtaaacgcc                                                                     >  2:465371‑M2/1‑11 (MQ=255)
                                                                                                                                           ccgcATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTACATTTATTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCctct            <  1:1159461/150‑1 (MQ=255)
                                                                                                                                              cATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCCTCTGtt         <  2:697135/150‑1 (MQ=255)
                                                                                                                                                tCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGAGAACGCACCTGTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCCTCTGTTTa       <  1:688482/150‑1 (MQ=255)
                                                                                                                                                 ccGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCCTCTGTTTAt      <  2:814779/150‑1 (MQ=255)
                                                                                                                                                  cGGCctacatttgacagccgttgtaggcctgataagacgcgcaagcgtcgcatcaggcgttggttgccgaatgcggcgtaaacgccttatccggcccaggttttgctattaccaccagatttccatctgggcaccgaaggtccactcgtc     <  1:446400‑M2/150‑147 (MQ=255)
                                                                                                                                                   ggCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACaatgaaaat                                   <  1:909484/119‑1 (MQ=255)
                                                                                                                                                   ggCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTc                <  1:511607/138‑1 (MQ=255)
                                                                                                                                                   ggCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCCTCTGTTTATca    >  2:212970/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAATAAAAGTCTCATCGTCCTCTGTTTATCAGC  >  NC_000913_3_hsa_pgi/4249324‑4249622

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.