New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_pgi 551354 =NA (NA)25 (0.390) 16/266 3.8 2.3% noncoding (1/157 nt) REP52 (repetitive extragenic palindromic) element; contains 4 REP sequences REP52 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913_3_hsa_pgi = 4229379 1061 (16.630)noncoding (4/70 nt) REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1118 total aligned reads displayed.

GCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCC  >  NC_000913_3_hsa_pgi/4229230‑4229528
                                                                                                                                                      |                                                                                                                                                      
gCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCC‑GTAg                                                                                                                                                        <  1:377285/150‑1 (MQ=255)
   gagCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGcc                                                                                                                                                     >  2:975945/1‑150 (MQ=255)
        ttGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATa                                                                                                                                                >  2:667117/1‑150 (MQ=255)
           aaaCCAGTTCGCTACATTTAGGCTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGa                                                                                                                                             >  2:216430/1‑150 (MQ=255)
                  ttCGCTACATTTAGGCTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCa                                                                                                                                      >  1:1107021/1‑150 (MQ=255)
                   tcccTACATTTAGGCTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCaa                                                                                                                                     <  2:1036434/147‑1 (MQ=255)
                   tCGCTACATTTAGGCTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGGAGATGAAGGACGGGACGTTTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCaa                                                                                                                                     <  1:170343/150‑1 (MQ=255)
                      cTACATTTAGGCTTACTGGGAGATATGCAGTGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCg                                                                                                                                  >  2:123899/1‑150 (MQ=255)
                      cTACATTTAGGCTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCg                                                                                                                                  >  1:725622/1‑150 (MQ=255)
                       tACATTTAGGCTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGt                                                                                                                                 >  1:20164/1‑150 (MQ=255)
                        aCATTTGGGCTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCTGGATGAAGATGAAGGACGGGACGAGTATTAATATTTTGAATCCT‑GTAGGCCTGATAAGACGCTTGACGCGTc                                                                                                                                <  1:125315/150‑1 (MQ=255)
                        aCATTTAGGCTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAACCGGATGAAGATGAAGGACGGGACGAGTATTGATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTc                                                                                                                                <  2:1120288/150‑1 (MQ=255)
                         cATTTAGGCTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCg                                                                                                                               >  1:155592/1‑150 (MQ=255)
                         cATTTAGGCTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCg                                                                                                                               >  2:811632/1‑150 (MQ=255)
                            ttAGGCTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCAt                                                                                                                            <  1:969384/150‑1 (MQ=255)
                                gCTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGTCGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAgg                                                                                                                        >  1:1053827/1‑150 (MQ=255)
                                gCTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACTCGTCAAGCGTCGCATCAgg                                                                                                                        <  2:379237/150‑1 (MQ=255)
                                 cTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTc                                                                                                                                >  1:326717/1‑141 (MQ=255)
                                 cTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGc                                                                                                                       >  1:413520/1‑150 (MQ=255)
                                 cTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTATTGTTAGGTGGCTTACAGTGTGCTGGAACAGCCGGATTAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCGT‑GTAGGCCTACTAAGACACGTCAAGCGTCGCATCAgga                                                                                                                       >  2:236463/1‑149 (MQ=255)
                                  ttACTGGGAGATATGCAGCGCCTGAACTCACTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGACGGATGAAGATCAAGGACGGGACGAGTATTAATATTGTGAATCCG‑GTAAGCCTGATAAGACGCGTCAAGCGTCGCCTCACGCa                                                                                                                      >  2:453596/1‑150 (MQ=255)
                                      tGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTAt                                                                                                                  >  1:756469/1‑150 (MQ=255)
                                      tGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTAt                                                                                                                  >  1:644926/1‑150 (MQ=255)
                                         gagaTATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGaa                                                                                                               <  1:562079/150‑1 (MQ=255)
                                          agaTATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACGGTGGGCTGGAACAGGGGGCTGAAGATGTACGACGGGGGAAGGGTTCAGATTGTGAATCCT‑GTAGGCCTGCTAAGACGCGTCAAGGGTCGCAACGTGCACGATGacc                                                                                                              >  2:431684/1‑148 (MQ=255)
                                          agaTATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAAc                                                                                                              <  1:337853/150‑1 (MQ=255)
                                            atatGCCGCGCCTGAACGCGCTGTTTTGTTCGGTGGCTTACAGTGGTCTGGAACAGCCGGATGAAGATCAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACaa                                                                                                            <  2:1021461/150‑1 (MQ=39)
                                            atatGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACaa                                                                                                            <  2:1054535/150‑1 (MQ=255)
                                             tatGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAg                                                                                                           >  1:393453/1‑150 (MQ=255)
                                                 gaGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGc                                                                                                       <  2:520688/149‑1 (MQ=255)
                                                 cAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGCCAAGCGTCGCATAAGGCACTATGAACAAGATGc                                                                                                       >  1:262848/1‑150 (MQ=255)
                                                  aGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATAAACCTACAGGACCGAACGAGTAGTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCACCAGGCACTATGAACAAGATGcc                                                                                                      >  2:1077662/1‑150 (MQ=38)
                                                   gggcCTGCACTCGCTGTTTTGTTCGGTGGCTTACAGCGTGCTGGCACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATCTTGTGCATGCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCg                                                                                                     <  1:699368/148‑1 (MQ=38)
                                                      ccTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATACGACGCGTCAAGCGTCGCATCAGGCACTAt                                                                                                                  >  1:221586/1‑134 (MQ=255)
                                                       cTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTc                                                                                                                                <  2:634071/119‑1 (MQ=255)
                                                       cTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGc                                                                                                                       <  2:165576/128‑1 (MQ=255)
                                                        ttaaCTCGCTGTTTTGCTCGGTGGCTTACAGTGGGCGGGAACAGTCGGATGAAGATGAAGGACGGGACGAGTATGAATATTTTGAACCCT‑GTCGGCCTGATAAGACGCGTCAAGCGTCGCAGCAGGCACTATGAACAAGATGCCGGAT‑Ca                                                                                               <  2:305978/148‑1 (MQ=255)
                                                        tGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGGT‑Ca                                                                                               >  1:810880/1‑150 (MQ=255)
                                                          aaCTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATg                                                                                             <  2:1103076/150‑1 (MQ=255)
                                                            cTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCa                                                                                           >  1:296792/1‑150 (MQ=255)
                                                             tCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CAt                                                                                              <  1:604454/146‑1 (MQ=255)
                                                             tCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCAt                                                                                          >  1:1151359/1‑150 (MQ=255)
                                                             gcGCTGTGTTGTTCGGGGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCAt                                                                                          <  2:649678/149‑1 (MQ=255)
                                                               gCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATcc                                                                                        >  2:155982/1‑150 (MQ=255)
                                                                cTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCg                                                                                       >  1:108790/1‑150 (MQ=255)
                                                                      tGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAAtt                                                                                 >  2:1157328/1‑150 (MQ=255)
                                                                       gTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATATGACGCGTCAAGCGTCTCAGCAGGCACTATGAACAAGATGCCGGATGCATG‑ATCCGGCatctt                                                                                <  1:1164529/150‑5 (MQ=255)
                                                                       gTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTc                                                                                >  1:78040/1‑150 (MQ=255)
                                                                        ttCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTc                                                                                                                                <  1:544867/102‑1 (MQ=255)
                                                                          cGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGc                                                                                                                                   >  1:520302/1‑97 (MQ=255)
                                                                                 ttACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGGCGAGTATTAATATTGTGAATCCT‑AAACGCCAGCATAGTGGCGTCAAGCGTGACATCAGGGCCGTGGAAAATATTCCCGGAT‑CATGCAACAGGCTATTCCATNAAAAAc                                                                      >  2:493325/1‑150 (MQ=255)
                                                                                 ttACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAAc                                                                      >  2:613001/1‑150 (MQ=255)
                                                                                   aCAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACgg                                                                    <  1:988380/150‑1 (MQ=255)
                                                                                   aCAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACgg                                                                    <  2:924189/150‑1 (MQ=255)
                                                                                    cAGTGTGCTGAAACAGCCGGATGAAGATGAAGTACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGt                                                                   <  1:1139802/150‑1 (MQ=255)
                                                                                      gtgtGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTG‑AAAGCTTCGGATGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGa                                                                 <  1:869748/150‑1 (MQ=38)
                                                                                         tgCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCa                                                              <  2:687502/150‑1 (MQ=255)
                                                                                            tGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAt                                                                                                  >  1:439343/1‑112 (MQ=255)
                                                                                             ggAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCAc                                                                              <  1:478142/130‑1 (MQ=255)
                                                                                             ggAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGCGAcaacgag                                                          >  2:890820/1‑144 (MQ=255)
                                                                                              gAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTc                                                         >  1:95273/1‑150 (MQ=255)
                                                                                              gAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCAGGCAATTCACTTAAAAACGGTGACCAGCTTc                                                         >  2:843439/1‑150 (MQ=255)
                                                                                                aCAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCCCTTAAAAACGGTGACCACCTTCCa                                                       >  1:57563/1‑150 (MQ=255)
                                                                                                   gCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCg                                                    >  1:31348/1‑150 (MQ=255)
                                                                                                    ccGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCCATTCACTCAAAAACGGTGACCAGCTTCCAGCgg                                                   >  2:549266/1‑150 (MQ=255)
                                                                                                       gatgaagatgaaGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGacc                                                >  2:583727/1‑148 (MQ=255)
                                                                                                          gaagatgaagGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCCACAATACGATTAAAAACGGTGACCAGCTTCCAGCGGAACCGc                                             >  1:627180/1‑150 (MQ=38)
                                                                                                             gatgaagGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGTCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGcttc                                          >  1:79861/1‑150 (MQ=255)
                                                                                                             gatgaagGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGcttc                                          <  2:95273/150‑1 (MQ=255)
                                                                                                                   ggacgggacgAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAAcc                                               <  1:457312/139‑1 (MQ=255)
                                                                                                                    gacgggacgAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAgg                                                                                                                        >  2:262755/1‑66 (MQ=255)
                                                                                                                    gacgggacgAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCa                                   >  2:567386/1‑150 (MQ=255)
                                                                                                                     actgtacgAGTATTAATATTGTGAATCCT‑GGAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAg                                  <  1:841588/145‑1 (MQ=255)
                                                                                                                       gggacgAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGAcc                                                               <  2:709975/119‑1 (MQ=255)
                                                                                                                        ggacgAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCt                               >  2:734035/1‑150 (MQ=255)
                                                                                                                        ggacgAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACGCTGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCCTCGGAACCGCCTCTTCACCAGcat                               >  2:475080/1‑148 (MQ=39)
                                                                                                                            gAGTATTAATATTGTGAATCCT‑GTAGTCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAATAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTaaa                           <  1:1066867/150‑1 (MQ=255)
                                                                                                                            gAGTATTAATATTGTGAATCCT‑GTAGGCCTGATGCCTCGCGACATTCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACGTAAAAACGGAGAACAGCTTCCAGCGGAACCGGTTCTTCACCAGCCTTaaa                           >  1:286012/1‑150 (MQ=255)
                                                                                                                              gTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCg                                                    <  1:1127774/123‑1 (MQ=255)
                                                                                                                              gTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGAGTAGCGTAACTCACGATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAaca                         <  1:926756/150‑1 (MQ=255)
                                                                                                                               tATTACTATTGTGAATCCT‑GTAGGCCTGAAAAGACGCGACAAGCGTCGCCGCAGGCATTATAAACAGGGTTCCGGAT‑CATGCATCCCGCAATTCACTTAAAACTGATGACCAGCTTCCAGCGGACGCGCTTACTCACCAGCCTTTAacac                        >  1:1001026/1‑150 (MQ=255)
                                                                                                                               tATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAacac                        >  1:73955/1‑150 (MQ=255)
                                                                                                                                 ttAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCAc                                                                              >  2:331957/1‑94 (MQ=255)
                                                                                                                                 ttAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTa                             >  2:412445/1‑143 (MQ=255)
                                                                                                                                 ttAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACAt                      <  1:852682/150‑1 (MQ=255)
                                                                                                                                    atatTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAg                   >  1:677112/1‑150 (MQ=255)
                                                                                                                                    atatTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAg                   >  1:661472/1‑150 (MQ=255)
                                                                                                                                    atatTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAg                   >  1:18841/1‑150 (MQ=255)
                                                                                                                                     tatTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAgt                  <  2:18909/150‑1 (MQ=255)
                                                                                                                                      atTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAACACGGCCATCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAATCACATAAatg                 <  2:792318/150‑1 (MQ=38)
                                                                                                                                      atTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGACCCGCTTCTTCACCAGCCTTAAACACATAAgtg                 >  2:864078/1‑150 (MQ=255)
                                                                                                                                       ttGTGAATCCT‑GTAGGCGTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAgtgg                <  2:1138076/150‑1 (MQ=255)
                                                                                                                                       ttGTGAATCCT‑GTAGGCCTGATAAGACGCGTGGAGCGTCGCGTCATGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAgtgg                >  1:240519/1‑150 (MQ=255)
                                                                                                                                        tgtgAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAgtggt               <  1:710826/150‑1 (MQ=255)
                                                                                                                                         gtgAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAgtggtg              >  2:758309/1‑150 (MQ=255)
                                                                                                                                          tgAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGgtgt             >  1:908007/1‑150 (MQ=255)
                                                                                                                                              tCCT‑GTAGGCCTGATAGGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCgg         >  1:1033059/1‑150 (MQ=255)
                                                                                                                                              tCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCgg         <  1:500739/150‑1 (MQ=255)
                                                                                                                                              tCCG‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCgg         <  2:287426/150‑1 (MQ=255)
                                                                                                                                                 t‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGcc      >  2:351776/1‑150 (MQ=255)
                                                                                                                                                      |                                                                                                                                                      
GCAGAGCATTGAAACCAGTTCGCTACATTTAGGCTTACTGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCT‑GTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCC  >  NC_000913_3_hsa_pgi/4229230‑4229528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.