New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_pgi	662343 =	44 (0.820)	3 (0.060)	3/254	NT	6.5%	intergenic (‑65/+36)	lipB/ybeD	octanoyltransferase; octanoyl‑[ACP]:protein N‑octanoyltransferase/UPF0250 family protein
	?	NC_000913_3_hsa_pgi	662368 =	45 (0.900)					intergenic (‑90/+11)	lipB/ybeD	octanoyltransferase; octanoyl‑[ACP]:protein N‑octanoyltransferase/UPF0250 family protein

TCGGTGAATTCATGCATAGCCTGGGAGATTGGCTCGTAAGGCTGAAGACCGAGCTGGCGGACAAGAATTTTATCCTGATACAAAACGGCATCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATACAGTGTTTCAACCTGCTCGATATGAGTGGCGTTGATAGTGATAGATACCGAGTGGTAGTTGCCTT  >  NC_000913_3_hsa_pgi/662196‑662488                                                                                                                                                    |                                                                                                                                                  tCGGTGAATTCATGCATAGCCTGGGAGATTGGCTCGTAAGGCTGAAGACCGAGCTGGCGGACAAGAATTTTATCCTGATACAAAACGGCATCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAgc                                                                                                                                                  >  2:321025/1‑148 (MQ=255)     tGAATTCATGCATAGCCTGGGAGATTGGCTCGTAAGGCTGAAGACCGAGCTGGCGGACAAGAATTTTATCCTGATACAAAACGGCATCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTAcc                                                                                                                                              <  1:500830/149‑1 (MQ=255)          ggtaaaaccaagcagcaaaggcaactaccactcggtatctatcactatcaacgcccctcatatcgagcaggttgaaacactgtatgaagaactgggcaaagtcgatattgtccgcatgggtcagtaactcgcttctccgatacccaaca                                                                                                                                         <  1:317509‑M1/11‑5 (MQ=255)                 tAGCCTGGGAGATTGGCTCGTAAGGCTGAAGACCGAGCTGGCGGACAAGAATTTTATCCTGATACAAAACGGCATCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTTACCGACCAGGAGcc                                                                                                                                  >  1:324606/1‑149 (MQ=255)                 tAGCCTGGGAGATTGGCTCGTAAGGCTGAAGACCGAGCTGGCGGACAAGAATTTTATCCTGATACAAAACGGCATCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCa                                                                                                                                        <  1:350053/143‑1 (MQ=255)                 tAGCCTGGGAGATTGGCTCGTAAGGCTGAAGACCGAGCTGGCGGACAAGAATTTTATCCTGATACAAAACGGCATCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCa                                                                                                                                        >  2:350053/1‑143 (MQ=255)                   ggcTGGGAGATTGGCTCCTAAGGCTGAAGACCGAGCTGGCGGACAAGAATTTTATCCTGATACAAAACGGCATCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCgg                                                                                                                                <  2:267107/147‑1 (MQ=255)                    agcagcaaaggcaattaccactcggtatctatcactatcaacgccactcatatcgagcaggttgaaacactgtatgaagaactgggcaaaatcgatattgtccgcatggttctgtaactcgtttctccGTTACCCGACCAGGAGCCggg                                                                                                                               >  2:990492‑M1/129‑149 (MQ=255)                      tGGGAGATTGGCTCGTAAGGCTGAAGACCGAGCTGGCGGACAAGAATTTTATCCTGATACAAAACGGCATCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTa                                                                                                                             >  2:284668/1‑149 (MQ=255)                      tGGGAGATTGGCTCGTAAGGCTGAAGACCGAGCTGGCGGACAAGAATTTTATCCTGATACAAAACGGCATCTCCATGGATAATGAGTAAAAGTGGGGGAAAAGTATATAAAAGCAAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTa                                                                                                                             >  1:121695/1‑149 (MQ=255)                         gagaTTGGCTCGTAAGGCTGAAGACCGAGCTGGCGGACAAGAATTTTATCCTGATACAAAACGGCATCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACg                                                                                                                          >  2:744336/1‑149 (MQ=255)                              tGGCTTGTAAGGATGAAGACCGAGCTGGCTTAGAATAATTTTATCCTGATACAAAACGGCATCTCCGTGGAGAATGAGCAAAAGTGTGCTAAAAGTATATCACAGCGAGGTGAGGGGAGTTACCCGACCAGGAGCCGTTTAACTGAGaa                                                                                                                     <  2:459518/149‑1 (MQ=255)                                  tCGAAAGGCTGAAGACCGAGCTGGCGGACAATAATTTTATCCTTATACAAAACGGCATCTCCGTGGAGAATGAGTAAAATTGGGGGAAAAGTATATCACAGCGAGTAGAGGGGAGTTACCCGAACAGGAGCCGGGTAACGGAGAAGCGa                                                                                                                 <  1:762315/149‑1 (MQ=255)                                  ccGTAAGGCTGAAGACCGAGCTGGCGAACAAGAATTTTATCCTGATACAAAACGGCATCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGa                                                                                                                 <  2:378159/148‑1 (MQ=255)                                   cttAAGGCTGAAGACTGAGCTGGCGGACAAGAATTTTATCCCGATACAAAACGGCATCTACGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATTACAGCGTGGAGAGGTGATTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAg                                                                                                                <  1:660411/147‑1 (MQ=255)                                      aaGGCTTAAGACCGAGCTGGCGGACAAGAATTTGATCCTGACACAAAACGGCATCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTa                                                                                                             <  1:24082/149‑1 (MQ=255)                                        ggCTGAAGACCGAGCTGGCGGACAAGAATTTTATCGTGATACAAAACGGGATATCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGACGGGTAACGGAGAAGCGAGTTaga                                                                                                           >  2:366574/1‑147 (MQ=255)                                            gAAGACCGAGCTGGCGGACAAGAATTTTATCCTGATACAAAACGGCATCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGTGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGCGCAGCGAGATCCCGAAc                                                                                                       >  2:753172/1‑149 (MQ=255)                                            gAAGACCGAGCTGGCGGACAAGAATTTTATCCTGATACAAAACGGCATCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAAAGGAGAAGCGAGTTACAGAAc                                                                                                       >  1:511082/1‑149 (MQ=255)                                              aGACCGAGCTGGCGGACAAGAATTTTATCCTGATACAAAACGGCATCTTCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCa                                                                                                     <  1:707836/149‑1 (MQ=255)                                               gACCGAGCTGGCGGACAAGAATTTTACCCTCTGTCAAAACGGCATCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGAGGAGTTACACGAAAAGGCGCCGGGTAACGGAAAATCGAGTCAGAGaagcgt                                                                                                    >  2:217440/1‑145 (MQ=255)                                                 ccGAGCTGGCGGACAAGAATTTTATCCTGATACAAAACGGCATCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGc                                                                                                  <  1:175204/149‑1 (MQ=255)                                                       tcgCGGAAAAGTATTTTATCCTGATACAAAACGGCATCTCCGTGGAGAAGTAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACaa                                                                                            <  2:433465/147‑1 (MQ=255)                                                                      ttATCCTGATACAAAACGGCATCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGCGACGCCGATGACAGAACCATGCGGACAATATCGATTTTGCCCa                                                                             <  1:744336/149‑1 (MQ=255)                                                                            tGATACAAAACGGCATCGCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCAGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGttctt                                                                       <  2:649080/149‑1 (MQ=255)                                                                             gATACAAAACGGCATCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGttcttc                                                                      <  2:979751/149‑1 (MQ=255)                                                                              aTAGAAAAAGGAAACTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCTCAGTTCTTCa                                                                     <  1:978762/149‑1 (MQ=255)                                                                                ataaaaCGGCATCTCCGTAGAAAATAATAAAAAATGGGGGAAAAGTATATAACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATa                                                                   <  1:433376/147‑1 (MQ=255)                                                                                aCAAAACGGCATCTCCGTAGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATa                                                                   <  2:577752/149‑1 (MQ=255)                                                                                 cAAAACGGCATCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATAc                                                                  >  1:20747/1‑149 (MQ=255)                                                                                  aaaaCGGCATCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATACa                                                                 <  1:299694/149‑1 (MQ=255)                                                                                    caCGGCATCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATTACAGCGAGGCGAGGGGAGTTACCCGACCAGGAGCCGCGTAACGGAGAAGCGGGTTACAGAACCATGCCGACAATATCGATTTTGCCCAGTTCTTCATACAgt                                                               <  2:298766/148‑1 (MQ=255)                                                                                        gCATCGCCGTGGAGAATGAGGAAAAGTGGGGGAAAAGTATAGCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATACAGTGttt                                                           <  2:479256/149‑1 (MQ=255)                                                                                          aTCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGGGGTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATACAGTGTTTCa                                                         >  1:735291/1‑149 (MQ=255)                                                                                          aTCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATACAGGGTTTCa                                                         >  2:203586/1‑149 (MQ=255)                                                                                            ctcCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATACAGTGTTTCAAc                                                       <  1:992789/149‑1 (MQ=255)                                                                                             tcCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATACAGTGTTTCAAcc                                                      >  1:17763/1‑149 (MQ=255)                                                                                                  gaactgggcaaaatcgatattgtccgcatggttctgtaactcgcttctccGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTa                                                                                                             >  1:291186‑M1/51‑89 (MQ=255)                                                                                                  gaactgggcaaaatcgatattgtccgcatggttctgtaactcgcttctccGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTa                                                                                                             <  2:291186‑M1/39‑1 (MQ=255)                                                                                                     gaATTAGGAAAAGTGGGGGAAAAGTAGATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATACAGTGTTTCAACCTGCTCGat                                              <  1:255860/149‑1 (MQ=255)                                                                                                       attaGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACACGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATACAGTGTTTCAACCTGCTCGatat                                            <  2:390817/146‑1 (MQ=255)                                                                                                         tagcaaaaGGGGGGGAAAAGGAGATCACAGCGAGGAGAGGGGAGTTATCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATACAGTGTTTCAACCTGCTCGATATGa                                          <  2:279932/145‑1 (MQ=255)                                                                                                         gAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATACAGTGTTTCAAACTGCTCGATATGa                                          >  1:976394/1‑149 (MQ=255)                                                                                                             aaaaGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTATTCATAAAGTATTTCAACCTGCTCGATATGaattg                                      >  2:286933/1‑145 (MQ=255)                                                                                                                    ggggAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTCACGGGCAACCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTGCATCCAGTTTTTCAACCTGCTCGAGATGAGTCGCGTtgat                               >  1:839907/1‑149 (MQ=255)                                                                                                                          aaGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGCCACGTAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATAAAGTGTTTCAACCTGCTCGATATGAGTGCCGTtgatagtgat                         >  1:196531/1‑149 (MQ=255)                                                                                                                                   acaGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATACAGTGTTTCAACCTGCTCGATATGAGTGGCGTTGATAGTGATAGATACCgc                >  2:543584/1‑148 (MQ=255)                                                                                                                                     aGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATACAGTGTTTCAACCTGCTCGATATGAGTGGCGTTGATAGTGATAGATACCGAGt              >  1:43140/1‑149 (MQ=255)                                                                                                                                              agGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATACAGTGTTTCAACCTGCTCGATATGAGTGGCGTTGATAGTGATAGATCCCGAGTGGTAGTTGc     >  2:960704/1‑149 (MQ=255)                                                                                                                                                gggAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATACAGTGTTTCAACCTGCTCGATATGAGTGGCGTTGATAGTGATAGATACCGAGTGGTAGTTGCCt   >  2:936588/1‑149 (MQ=255)                                                                                                                                                gggAGGTACACGACCAGGAGCCGGATAACGGAGCAGCGCGGCACAAAACCATGCGGACAATATCGATCTTGCCCAGTTCTTCATACAGTGTTTCAACCTGCTCGATATGAGTGGCGTTGATAGTGATAGATACCGAGTGGTAGTTGCCt   <  1:438714/149‑1 (MQ=255)                                                                                                                                                 ggAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGCTTTTGCCCAGTTCTTCATACAGTGTTTCAACCTACTCGATATGAGTGGCGTTGATAGTGATAGATAACGAGTGGTAGTTGCCtt  >  1:314634/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                  TCGGTGAATTCATGCATAGCCTGGGAGATTGGCTCGTAAGGCTGAAGACCGAGCTGGCGGACAAGAATTTTATCCTGATACAAAACGGCATCTCCGTGGAGAATGAGTAAAAGTGGGGGAAAAGTATATCACAGCGAGGAGAGGGGAGTTACCCGACCAGGAGCCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATACAGTGTTTCAACCTGCTCGATATGAGTGGCGTTGATAGTGATAGATACCGAGTGGTAGTTGCCTT  >  NC_000913_3_hsa_pgi/662196‑662488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.