Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913_3_hsa_pgi 1,978,503 Δ776 bp 100% insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_hsa_pgi 1978503–1979269 1979278 10–776 41 [1] [0] 40 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_pgi = 19785020 (0.000)33 (0.660) 30/254 NT 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913_3_hsa_pgi 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

AAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATT  >  NC_000913_3_hsa_pgi/1978357‑1978650
                                                                                                                                                 |                                                                                                                                                    
aaaTGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtat                                                                                                                                                   >  1:738083‑M1/1‑146 (MQ=255)
         tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatac                                                                                                                                          >  1:974916‑M1/1‑137 (MQ=255)
         tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatac                                                                                                                                          <  1:841218‑M1/149‑13 (MQ=255)
         tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatac                                                                                                                                          <  1:506406‑M1/149‑13 (MQ=255)
                ttATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtt                                                                                                                                   >  2:43173‑M1/1‑130 (MQ=255)
                ttATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAAGAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtt                                                                                                                                   <  1:641542‑M1/149‑20 (MQ=255)
                    cTAAGATTTTTTCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAATCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                               <  2:508362‑M1/149‑24 (MQ=255)
                     tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                                                                              >  2:355979‑M1/1‑125 (MQ=255)
                       aGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtg                                                                                                                            >  1:528457‑M1/1‑123 (MQ=255)
                                cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgtgtgtatttcaat                                                                                                                   >  1:76163‑M1/1‑114 (MQ=255)
                                 tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCAATGTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttgtggtgtatttcaatc                                                                                                                  >  2:100991‑M1/1‑113 (MQ=255)
                                                ggactCGTCACTACACGCACATAAAATGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                                   <  2:984233‑M1/147‑52 (MQ=255)
                                                  aCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcg                                                                                                 <  1:803717‑M1/149‑54 (MQ=255)
                                                    tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGGTGCAGATCACACAAAACACTCAATTACTTAACATAAATGgataagtcattcttttgttttgggtgtatttcaatctgttaaaaagttttttgct                                                                                               >  1:155898‑M1/1‑94 (MQ=255)
                                                    tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtaataattttgttttgggtgtatttcaatctgttaaaaaatttttcgct                                                                                               >  1:660936‑M1/1‑94 (MQ=255)
                                                      gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATACATTtataagtcatacttttgttttgggtgtatttcaatctgtttaaaagtttttcactct                                                                                             >  2:417705‑M1/1‑92 (MQ=255)
                                                                 cacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagca                                                                                  >  2:908038‑M1/1‑81 (MQ=255)
                                                                     tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                                                                              <  1:355979‑M1/149‑73 (MQ=255)
                                                                        aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatga                                                                           >  2:489024‑M1/1‑74 (MQ=255)
                                                                         aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaa                                                                          >  1:247521‑M1/1‑73 (MQ=255)
                                                                             aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacag                                                                      <  1:753001‑M1/149‑81 (MQ=255)
                                                                                  ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACTAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtttgaaagtttttcgctacgctagcaagcaaaaatgaaacaggaata                                                                 <  1:213039‑M1/149‑86 (MQ=255)
                                                                                            ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg                                                       <  1:649003‑M1/149‑96 (MQ=255)
                                                                                               aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat                                                    >  1:412424‑M1/1‑51 (MQ=255)
                                                                                                ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg                                                   <  1:629406‑M1/149‑100 (MQ=255)
                                                                                                         gATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttgggcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaca                                          <  1:897391‑M1/149‑109 (MQ=255)
                                                                                                             cAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtca                                      >  2:665865‑M1/1‑37 (MQ=255)
                                                                                                               gATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                                    >  1:1002610‑M1/1‑35 (MQ=255)
                                                                                                                aTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                                   <  2:738083‑M1/149‑116 (MQ=255)
                                                                                                                   acacaAAACACTGCATTACTTAACATAAATGtataagttatacttttgttttgggtgtatttcaagctgttaaaaagtttttcgctacgctagcaagcaaaaatgacacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                                <  2:243524‑M1/149‑119 (MQ=255)
                                                                                                                       aaaaCACTTAATTACTTAACATAAATTtataagtcatacttttgttttgggtggatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactca                            <  1:247240‑M1/149‑123 (MQ=255)
                                                                                                                       aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactca                            <  2:247521‑M1/149‑123 (MQ=255)
                                                                                                                         aaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcccgcaaacatgaaacagaaataatcgaaatgggatgttgcgcacagtcaaaataactcacc                          >  2:862078‑M1/1‑25 (MQ=255)
                                                                                                                                   tACTCAACATTAATGtacaagtcgtacttttggcttgggttcatttcaatctgtgaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggcatcatcgaaatgggctgttgcgcacagtcaaaataacgcaccgcaaataatc                <  2:18722‑M1/149‑135 (MQ=255)
                                                                                                                                      ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgcgaagaaggtgttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaacgtaaataatcatc             >  1:195579‑M1/1‑12 (MQ=255)
                                                                                                                                      ttAACATAAATGtataagtcatacttccagattttgtgtattgcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgaacagtcaaaatacctcacagtaaataatcatc             >  2:721270‑M1/1‑12 (MQ=255)
                                                                                                                                        gggtggaaTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGc           <  2:998811/143‑1 (MQ=17)
                                                                                                                                         aCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaattggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgc          <  1:908038‑M1/149‑141 (MQ=255)
                                                                                                                                               aTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgagcacagtcaaaataactcaccatgaataatcatctgctctaaa    >  2:229865‑M1/1‑3 (MQ=255)
                                                                                                                                                tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaat   <  1:489024‑M1/149‑148 (MQ=255)
                                                                                                                                                 gtataagtcatacttttgttttgggtgtatttaaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgatgcgcacagtcaaaataactcaccgtaaataatcatctcctataaata  >  2:180679‑M1/1‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
AAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATT  >  NC_000913_3_hsa_pgi/1978357‑1978650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.