New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913_3_hsa_pgi | = 3584195 | NA (NA) | 20 (0.370) | 18/270 | NT | 37.7% | intergenic (+15/‑1) | insB1/yrhA | IS1 transposase B/pseudogene, interrupted by IS1E |
? | NC_000913_3_hsa_pgi | = 3665158 | 33 (0.620) | coding (653/825 nt) | gadX | acid resistance regulon transcriptional activator; autoactivator |
AATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATA‑TATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCAT > NC_000913_3_hsa_pgi/3584048‑3584343 | aaTTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCg > 1:1001270/1‑149 (MQ=11) aaTTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCg > 1:652501/1‑149 (MQ=11) ggCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTaaa < 1:86755/149‑1 (MQ=35) taCCTGAATCTGAGGCAGCACCGGGCACGGCTGGGACGGTAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTAATAGGGCGTTAATTTAACATAAAACTCTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTaa < 2:616762/148‑1 (MQ=11) aaCCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCAGCACGAACAACTACACCTGCAGTATCTGAACATCAGACACTATCAATAAGTTGGAGTCATTACCTACATTAAAAGTaa < 2:715661/149‑1 (MQ=11) aCCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAAc > 1:43461/1‑149 (MQ=38) aCCTGAAGCTGAGGCAGCAACTGTCAAGGCTGGGACGGAAGTCGCTGTCGTTTTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAAc < 2:279546/149‑1 (MQ=11) cTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGCCATTACCGACATTAAAAGTAACtt > 1:637757/1‑149 (MQ=255) cTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGAAAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACtt > 1:345806/1‑149 (MQ=255) tGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTCTCAATAAGTTGCAGTCATTACCGACATTAAAAGTAACttt > 2:301769/1‑149 (MQ=255) tCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGGAACTTTTTTg > 1:846324/1‑149 (MQ=255) gcagcaCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTa < 2:1004329/149‑1 (MQ=255) caCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTagagg > 1:170720/1‑148 (MQ=255) caCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAgaga > 1:477239/1‑149 (MQ=255) cTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATAGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTTGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGataa > 2:440890/1‑149 (MQ=255) ggCACGGCTGGGACGGAAGTCGCTGTCTTTCCCAAAATAGGTGGCGCTGCATCACAAAGTCCTCGGGCATTATCTGAACATAACACACTATCACTAAGTTAGAGTCCTTCACAACATTAAACGTAACCTTTTTAAAAATAGAGccaata > 2:231016/1‑149 (MQ=14) cGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATTACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGTGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTgg < 2:189777/149‑1 (MQ=255) gggAAGTCGCTGTCGTTGTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGaaaa < 2:595677/148‑1 (MQ=255) ttCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATA‑TATTCAGTTCGtt > 2:734259/1‑149 (MQ=255) ctcAAATTCGTTGGAGCTGTATGACAGAGTCATCGGGCATTATCTGAACATAATACACTATCAATAAGTTGGCGTCTTTACAGTCATTAAAAGTAACTGTTTTGAAATTAGAGATAATATTTGCACAGAAAATA‑TATTCAGTTCGTTTa < 2:17358/149‑1 (MQ=21) gaaaTCGGTGGAGCTGCATGACACAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGACATTACCGACATTGAAAATAACTTTTTTGAAATTAGAGACAATATTGGCACAGAAAATA‑TATTCAGTTCGTTTAGTg > 2:927540/2‑149 (MQ=25) aaaaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATA‑TATTCAGTTCGTTTAGTg > 1:705946/1‑149 (MQ=255) aaaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATA‑TATTCAGTTCGTTTAGTGa < 2:343114/149‑1 (MQ=255) aaTCGGTGTAGCTGCATGACAAAGTCATCGGGCACTATCTGAACATAAAACACTACCAATAAGATGGAGTTATTATCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATA‑TATTCAGTTCGTTTAGTGAt < 1:892304/149‑1 (MQ=25) aaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTTAAATTAGAGATAATATTGGCACAGAAAATA‑TATTCAGTTCGTTTATTGAt > 2:76479/1‑149 (MQ=255) aCAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATA‑TATTCAGTTCGTTTAGTGATTTATCTTCAGTCTTaaaa > 1:298949/1‑148 (MQ=255) cATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATA‑TATTCAATTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCa > 1:429282/1‑149 (MQ=255) aagcGGGTATTATATAAACAGAAAAGAATATCAATAGGTTGGAATCATAACCGAAATTCAAAGTAACTTTTTTGAAATTAGAGTTAATAAAAAAACAAAAAATA‑TATTCAGTTCGTTTAGTGATTTCTCTTCATTCTCAAACGAAATCa < 2:874250/146‑1 (MQ=255) gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATA‑TATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACAAAATCATGGa > 1:453097/1‑149 (MQ=255) tATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATA‑TATTCAGTTCGTTTAGt > 2:263585/1‑111 (MQ=255) tATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATA‑TATTCAGTTCGTTTAGt < 1:263585/111‑1 (MQ=255) tCTTAACATAAGACAATAGCAATGAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATA‑TATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAgttgtt < 2:640331/149‑1 (MQ=255) gAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATA‑TATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCat > 1:459486/1‑149 (MQ=255) aaCATAAAACACTATCAATAAGTTGGAGACAATACCGACAATAAAAGAAACTCTTTTGAAACGCGGTATAAAAATGGGAC‑GAAAAGATTATTCAGTTGGTTTAGTGATTGCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCata < 2:590186/149‑1 (MQ=19) aCATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATA‑TATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCataa > 1:878888/1‑149 (MQ=255) aaCACTATCAATAAGTTGGAGTCATTAGCGACATTAAAAGTAACTTTTTTGAAATTAGGGATAATATTGGCGCAGAAAATA‑TATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAAAGAAATCATGTGCAGTGGTTCATAATAATCa > 2:344846/1‑149 (MQ=255) tATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATA‑TATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAgg > 1:501083/1‑149 (MQ=255) tCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATA‑TATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACACTTGTTCATAATAATCAAAAAGaa > 1:176750/1‑149 (MQ=255) ttGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGCGATAAAAATGGCACAGAAAATA‑TATGCTGTTCGTTTAATGATTTCTCTTCGTTCTAAAACGAAATAATTGACAGTTCTTCATAATACTCCAAACGCAACaaaagt > 2:314319/1‑147 (MQ=255) tGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATA‑TATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATc > 2:140175/1‑149 (MQ=255) gttCATAACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATA‑TATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCAtt < 2:43461/147‑1 (MQ=255) ggTCTTTACCGTCATTAAAAGTAACTTTTTTGAAATTAGTGATATTATTGGCACAGAAAATA‑TATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCAtt < 1:301769/148‑1 (MQ=255) ggTCATTGCCGACATTAAAGGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATA‑TATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCAtt < 1:474183/148‑1 (MQ=255) cGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATA‑TATTCAGTTCTTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTTATAATAATCAAAAGGAAACAAAAATCATTGTAAACCAt > 1:211627/1‑149 (MQ=255) | AATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATA‑TATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCAT > NC_000913_3_hsa_pgi/3584048‑3584343 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |