New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_pgi	4218555 =	63 (1.180)	6 (0.130) +AAAACGCCTTATCCA	5/240	NT	9.7%	noncoding (120/132 nt)	REP311 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP311 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	NC_000913_3_hsa_pgi	= 4254030	NA (NA)					noncoding (102/130 nt)	RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site

TTCTAAGCAACAACAACCGTTGCTGACTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGTTTC  >  NC_000913_3_hsa_pgi/4218408‑4218700                                                                                                                                                    |                                                                                                                                                  ttCTAAGCAACAACAACCGTTGCTGACTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGCTCATGCGTTTAct                                                                                                                                                  >  2:432700/1‑148 (MQ=255)  tcgaaGAAACAACAACCGTTGGCGACGCTAGGCCGTAGAAGGCGGTCACTCCGATGCCGGCAATCGGTGCACGAGGCTTGACGCGACGCTTGCTCGTCTTATCATGCTTACAGCTGTTGCCGAACGTAGGCTGGATAAGGCGTTTAcgc                                                                                                                                                 <  2:28018/146‑1 (MQ=255)  tCTAAGCAACAACAACCGTTGCTGACTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTAcgc                                                                                                                                                 <  1:653814/149‑1 (MQ=255)              caacCGTTGCTGACTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGATGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCaa                                                                                                                                     <  2:345344/149‑1 (MQ=255)                acCGTTGCTGACTGTAGGCCGGATAAGGCGTTCCCGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAAtt                                                                                                                                   <  1:61342/149‑1 (MQ=255)                  cGTTGCTGACTGTAGGCCGGATAATGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATtct                                                                                                                                 <  1:268965/149‑1 (MQ=255)                  cGTTGCTGACTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCTATCAGAGCAGGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATtct                                                                                                                                 <  1:29033/149‑1 (MQ=255)                  cGTTGCTGACTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATtct                                                                                                                                 <  1:559605/149‑1 (MQ=255)                   cttttgtaCTATAGGCCGCATAAGTCTTTCACGCAGCATCCGGCAATCGGTGCACGATGGCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATtctc                                                                                                                                <  2:397540/142‑1 (MQ=21)                         gACTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCAGCATCCGGCAATTCTCTGCTcc                                                                                                                          >  1:959777/1‑149 (MQ=255)                            tGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACGGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCtga                                                                                                                       >  1:893977/1‑149 (MQ=255)                            tGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGCTAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCtga                                                                                                                       >  1:4769/1‑149 (MQ=255)                                 gCCGTATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGACTGATGCGACGCTTGCTCGTCTTATCATGCCTACAGCCGTTGCCGCACGTAGACTGGATAAGGCTTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAgg                                                                                                                  <  1:849874/149‑1 (MQ=25)                                 gCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCtgatgacg                                                                                                                  >  1:665996/1‑147 (MQ=255)                                 gCCGGATAAGGCGTTCACGCCGCATCAGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGAGTCTTATCATGCCTACAGCCGTTGCCGACCGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTCCTCCTGATGAgg                                                                                                                  >  2:289626/1‑149 (MQ=255)                                   tggATAAGGCGTTCACGCTGCCTCCGGCAATCGGTACACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGgc                                                                                                                <  1:5000/148‑1 (MQ=255)                                   cGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGgc                                                                                                                >  1:823861/1‑149 (MQ=255)                                     gATAAGGCGGTCACGCCGCATCCGGCAATCGGTGCACGATGCTTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGgcgc                                                                                                              <  2:615727/149‑1 (MQ=255)                                        aaGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTaa                                                                                                           >  2:80957/1‑149 (MQ=255)                                          ggCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTAATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTGAAt                                                                                                         >  2:261599/1‑149 (MQ=255)                                                 aCGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATACGGCAATTCTCTGCTCCTGTTGAGGGCGCTCAATGCCGCGt                                                                                                  >  2:680356/1‑149 (MQ=255)                                                     cgcATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGcc                                                                                              <  1:397805/149‑1 (MQ=255)                                                        aTCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCAGATGAGGGCGCTAAATGCCGCGTGGCCTgg                                                                                           >  1:255401/1‑149 (MQ=255)                                                            ggCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACGGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAAATCTCTGCTCCTGACGAGGGCGCTAAATACCGCGTGGCATAGAatc                                                                                       >  2:192416/1‑148 (MQ=37)                                                            ggCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCTGCGTGGCCTGGAatt                                                                                       >  1:712549/1‑149 (MQ=255)                                                              cAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGAATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAattat                                                                                     >  1:598550/1‑149 (MQ=255)                                                                 tCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTattga                                                                                  <  2:305868/149‑1 (MQ=255)                                                                 tCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTattga                                                                                  <  1:817879/149‑1 (MQ=255)                                                                     tGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGc                                                                              >  2:997554/1‑149 (MQ=255)                                                                        cggcgctttttaggcctacacaacacatcgcaatgtattgaatttgcagattatggaaggctggataaggcgttttCGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCa                                                                           >  2:763349‑M1/77‑149 (MQ=255)                                                                        aCGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCa                                                                           <  1:80957/149‑1 (MQ=255)                                                                          gcgcttctcaggcctacacaacacatcgcaatttattgaatttgcagattatggaagtctggataaggcgttttCGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCaaa                                                                         <  1:948790‑M1/75‑1 (MQ=255)                                                                            tGCCTGATGCGGCGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGGTAAGGCGGTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAAcc                                                                       >  2:541848/1‑149 (MQ=255)                                                                              ccTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCCTGGCCTGGAATTATTGATTGCTCAAACCAt                                                                     >  2:787399/1‑149 (MQ=255)                                                                               cTGATGCTACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCAtt                                                                    <  1:527522/149‑1 (MQ=255)                                                                                    gCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTgg                                                                                                >  2:486730/1‑116 (MQ=255)                                                                                    gCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTgg                                                                                                <  1:486730/116‑1 (MQ=255)                                                                                      gACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAg                                                             >  1:595462/1‑149 (MQ=255)                                                                                       aCGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCACGTCGCCTGGAATCATTGATTGCTCAAACCATTTTGCAAga                                                            >  1:377458/1‑148 (MQ=255)                                                                                              cgcgTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCACGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGag                                                     >  1:323228/1‑148 (MQ=255)                                                                                               gcgTCTTATCATGCCTACAGGCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCCGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATg                                                    <  2:354647/149‑1 (MQ=255)                                                                                                cgTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGACAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTg                                                                                            <  1:940867/108‑1 (MQ=255)                                                                                                cgTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGACAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTg                                                                                            >  2:940867/1‑108 (MQ=255)                                                                                                  tCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAatt                                                                                       <  1:544201/111‑1 (MQ=255)                                                                                                  tCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAatt                                                                                       >  2:544201/1‑111 (MQ=255)                                                                                                     tATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTattgat                                                                                 <  2:806181/114‑1 (MQ=255)                                                                                                     tATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTattgat                                                                                 >  1:806181/1‑114 (MQ=255)                                                                                                      caatttattgtatttgcagattatggaaggctggttaaggcgttttCGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTa                                             >  1:362620‑M1/47‑149 (MQ=255)                                                                                                      aTCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCt                                                                             <  2:979501/117‑1 (MQ=255)                                                                                                      aTCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAAc                                                                        <  2:624030/122‑1 (MQ=255)                                                                                                      aTCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAAc                                                                        >  1:624030/1‑122 (MQ=255)                                                                                                      aTCATGCCTAAAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCt                                                                             >  1:979501/1‑117 (MQ=255)                                                                                                         aTGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATgg                                          >  1:463536/1‑149 (MQ=255)                                                                                                         aTGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATgg                                          >  1:772000/1‑149 (MQ=255)                                                                                                         aTGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGCCTTCGATGCTCAGTATgg                                          >  1:308197/1‑149 (MQ=255)                                                                                                          tGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTTGCCTGGAATTATTGATTGCTAAAACCATTTTGGAGGGCTTCGAGGATCAGTATGGt                                         >  1:477341/1‑149 (MQ=39)                                                                                                           gCCTACAGCCGTTGTCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTc                                        <  2:98179/149‑1 (MQ=255)                                                                                                                  tttgcagattatgaaaggcttgataaggcgatttCGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCt                                 >  1:153076‑M1/35‑149 (MQ=255)                                                                                                                   ttgcagattatggacggctggataaggcgcttgCGCCGCACCCGGCAATTCTCTGCTCCTGATGAGGGCTCTAAATGCCGCTTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTc                                >  2:531166‑M1/34‑149 (MQ=255)                                                                                                                   ttgcagattatggaaggctggataaggcgttttCGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTc                                >  1:346582‑M1/34‑149 (MQ=255)                                                                                                                      ttGCCGAACGTAGGCTGCATAAGGTGGTTACGCCGCAGCCGGCAATTCTCTGCTCCTGATGAGGGCGCTATATGCCGCGTGGCCTGGAATTATCGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCATTATGGTCGATGCCTCGaa                             <  1:928242/149‑1 (MQ=255)                                                                                                                          cGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTAAGGTCGATTCCTCGAAGTGa                         >  1:12241/1‑149 (MQ=255)                                                                                                                          cGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTATCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGCAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGtac                         >  2:519985/1‑147 (MQ=255)                                                                                                                          cGAACGTAGGCTGGATAAGGCGTTGACGCCGCATGCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAGGGCTTCGAGGCTCAGTATGGTCGATTCCTCGAAGTGa                         <  2:701969/149‑1 (MQ=255)                                                                                                                               gTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGCTAAGCGCGCTAAATGCCGCGTAGCCTAGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCTATGCTCAGTATGGTCGATTCCTCGAAGTGACCTcc                    >  1:141648/1‑149 (MQ=39)                                                                                                                                aatgccggATAAGGCGTTTTCGCCGCATTCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCg                   <  1:549633/143‑1 (MQ=255)                                                                                                                                  ggCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCGGt                 >  1:837335/1‑149 (MQ=255)                                                                                                                                    cTGGATAAGGCGTTTACGCCACCACCTTCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCGGTgc               <  2:959777/149‑1 (MQ=255)                                                                                                                                     tGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAg                                               >  1:263559/1‑116 (MQ=255)                                                                                                                                     tGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAg                                               <  2:263559/116‑1 (MQ=255)                                                                                                                                          aaGGCGTGTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCgcagca         <  1:681897/149‑1 (MQ=255)                                                                                                                                             gCGTTTACGCCGCCTCCAGCAAGTTTCTGCTCCTGATGCGGGGACGAAATCCCGAGTGGGATGTACTGCTGGAATACACAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCATCGAAGTGACCGCCGGTGCGCAGCACCg      >  2:966103/1‑149 (MQ=255)                                                                                                                                               gcttACGCCTCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTACATGCCGCGTGGCCTGGAATTATTTATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGtt    <  2:549093/147‑1 (MQ=255)                                                                                                                                               gTTTGCGGCGAACCCGGCAATGCTCTGCTGCTGATGAGGTCGCCAAAGGCGTGGTTGCCTGGTATTTTTGATTGCTCAAACCATTTTGCAAGTCTTCGGTGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGtt    <  2:193660/149‑1 (MQ=255)                                                                                                                                                ttgtcgccgtAGCCGGCAATTCTCGGCTCCTGATGAGGGCGCTAAATGCCGCGGGGCCTGGAATGATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGGTCAGAGTGGGCGATTCCTCGAAGTGAGCGCCGGTGCGCAGCAGCGtgt   <  2:170765/145‑3 (MQ=255)                                                                                                                                                 ttccgccgcATCCGGCTATTCTTTCCTCCTGATGAGGGCGCTAAATGCCGCGTGGCATGGAGCTATTGACTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGTTTc  <  1:233535/146‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  TTCTAAGCAACAACAACCGTTGCTGACTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGTTTC  >  NC_000913_3_hsa_pgi/4218408‑4218700

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.