New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_pgi 4239768 =933 (17.470)4 (0.080) 4/248 NT 0.46% intergenic (+10/+37) yjbH/yjbT DUF940 family extracellular polysaccharide protein/putative periplasmic protein
?NC_000913_3_hsa_pgi 4239800 = 869 (17.730)intergenic (+42/+5) yjbH/yjbT DUF940 family extracellular polysaccharide protein/putative periplasmic protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1111 total aligned reads displayed.

GTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTGGTTGCCTGAGCGACTGGGCCATCATTGGGCTGGA  >  NC_000913_3_hsa_pgi/4239652‑4239948
                                                                                                                                                    |                                                                                                                                                    
gTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTc                                                                                                                                                      <  1:695865/149‑1 (MQ=255)
  ggggcgATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCAt                                                                                                                                                    <  1:381073/147‑1 (MQ=255)
  gcggcgATTGGCTGGATGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCAt                                                                                                                                                    <  1:987670/149‑1 (MQ=255)
   ctgcgATTGGTTGGACGCCGTTGACGCGTTCCGGTGGTCAGCAACTTGGGCGTAAGTTCGAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCAtt                                                                                                                                                   <  1:649995/147‑1 (MQ=255)
        aTTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTaa                                                                                                                                              >  2:798233/1‑149 (MQ=255)
            gCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTAGCACCTTCATCCTTACTgtg                                                                                                                                          >  1:683269/1‑147 (MQ=255)
            gCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGAGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGc                                                                                                                                          >  1:79192/1‑149 (MQ=255)
             cTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTATTAATGGcc                                                                                                                                         >  1:213307/1‑149 (MQ=255)
             cTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATGTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGcc                                                                                                                                         <  2:899461/149‑1 (MQ=255)
              tGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGCGCCAGTTTTCGCACTCACTGGCACCTTCATCCTTAATGGCCt                                                                                                                                        >  1:742091/1‑149 (MQ=255)
              tGGAAGCCGCTGACGCGTGACGGTGGTCAGGAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCt                                                                                                                                        <  1:28078/149‑1 (MQ=255)
               ggACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTACTGACCTg                                                                                                                                       >  2:958574/1‑149 (MQ=255)
                   ggcgcTGACGCGTGTGGGTGTTCGTGAACGGGGGCGAAAGTTCCAGTTGTAGGACATGACCAGCGACCGTAGCGTCAATTTCCGCGAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCAATCGCACCTTCATTCTTAATGGCCGGTCGa                                                                                                                                   <  2:990102/147‑1 (MQ=255)
                   gccgcTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAATTCATGGGAAAGGTGCCAGTTTTCCCACTCACTGGCACCTTCATTCTTATTGGCCTGTCgc                                                                                                                                   >  2:295825/1‑148 (MQ=255)
                   gaccgggACGGGCGACCGTTGTCAGCAATGTGGGGCTCACTTCCAACTGAAAGACACGAACAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGa                                                                                                                                   <  2:361033/143‑1 (MQ=255)
                     cgcTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCgcgc                                                                                                                                 >  1:624164/1‑149 (MQ=255)
                      gcTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCAACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGcc                                                                                                                                >  2:877075/1‑149 (MQ=255)
                         gACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATc                                                                                                                             >  1:718046/1‑149 (MQ=255)
                          aCGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCa                                                                                                                            <  1:805283/149‑1 (MQ=255)
                            gcgTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAgg                                                                                                                          >  1:860498/1‑149 (MQ=255)
                              gcgACGGTGGTCAGCAAGTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCCAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACATTCATTCTTAATGGCCTGTCGAGCCATCAGGaa                                                                                                                        <  2:267424/147‑1 (MQ=255)
                                  cggccgtCAGCAAACGGGGTGTAACTTCCAGTTGTATGACATGATCACCGACCGTAGCGTCAATTTCCGCAAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGACCTGTCGAGCCATCAGGAACGCa                                                                                                                    <  2:653643/144‑1 (MQ=255)
                                  cGGTGGTCAGCAACTTGGGCGTACGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTCCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCa                                                                                                                    <  1:846172/149‑1 (MQ=255)
                                  cGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCAGGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCa                                                                                                                    <  1:585524/149‑1 (MQ=255)
                                  cGGGGGTCAGCAACTTGGGCGTCAGGTCCAGTTGTATGACATGACCAGCGACCGGAGCGTCAACTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCa                                                                                                                    <  2:762475/149‑1 (MQ=255)
                                   ggtggtCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAg                                                                                                                   >  1:457161/1‑149 (MQ=255)
                                     tggtCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGcc                                                                                                                                         <  2:507964/125‑1 (MQ=255)
                                     tggtCAGCAACTTGGGCGGAAGTTCCAGTTGGATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGtt                                                                                                                 <  2:833931/149‑1 (MQ=255)
                                       gtCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCa                                                                                                               <  1:93458/149‑1 (MQ=255)
                                        tCAGCAACTAGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAGGTCATGGTAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCCGGAACGCAGTGCAc                                                                                                              >  2:424867/1‑149 (MQ=255)
                                            cAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTccc                                                                                                          >  1:124304/1‑149 (MQ=255)
                                              aCTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTCGCGTCAATTTCCGCTAGCTCATGGGACAGGTGCCAGTTTTCGCACTCACTGGTGCATCGTTGCTGATTGGTGTTTCGATCCATCGTGAACGCAGTTCAGTTCCgg                                                                                                        >  1:228499/1‑149 (MQ=255)
                                                     cGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGc                                                                                                                                          <  1:167459/108‑1 (MQ=255)
                                                      ggacgTTCCAGTTGTATGGCATGGCTGGCGACCGGAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGTACCTTCATTCTTAATGGCCTGTCGAGCCAGAAGGAACGGAGTTCAGTCCCGGTTTGCGAt                                                                                                <  2:284283/145‑1 (MQ=255)
                                                      gTAATTGCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTGCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGAt                                                                                                <  1:727206/149‑1 (MQ=255)
                                                         aGTTCCAGTTGTATGAGATGACCAGCGACTGTAGCGTCAAGTTCCGGTAAGTCATGGGAAAGGTGCCAGTTTTAGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGGACGCAGGGTATGCCCGGTTTgagttttg                                                                                             <  2:221254/149‑8 (MQ=255)
                                                         aGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTg                                                                                             <  1:822687/149‑1 (MQ=255)
                                                           ttCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGgt                                                                                           <  1:915010/149‑1 (MQ=255)
                                                           ttCAAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGgt                                                                                           <  1:554708/149‑1 (MQ=255)
                                                           tgacAGTTGTATGACATGACCAGCGGCCGGAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGgt                                                                                           <  2:137484/146‑1 (MQ=255)
                                                           gacgaggtGTACGGCATGACTAGCGACCGTAGCGTCAATTTCCGCGAAGTCAGGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTAGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGgt                                                                                           <  2:152478/142‑1 (MQ=255)
                                                            tCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGgtg                                                                                          <  2:400609/149‑1 (MQ=255)
                                                             ccAGTTGTATGACATGACCAGCGACCGTAGCGGCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGgtgt                                                                                         <  1:891437/149‑1 (MQ=255)
                                                               aGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGgtgtgt                                                                                       >  1:973476/1‑149 (MQ=255)
                                                                 ttGTATGACATTACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTTCGATCTGGTGTGTaa                                                                                     >  1:253247/1‑149 (MQ=255)
                                                                 ttGTATGACATGACCAGCGACCGTAGCGTCACTTTCCGCTAAGTCATGGAAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCAAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGCTCTGGTGTGTaa                                                                                     >  1:394978/1‑149 (MQ=255)
                                                                  tgcatgacatgacCAACTACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATCCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCGCGGTTTGCGATCTGGTGTGTaaa                                                                                    <  2:319071/146‑1 (MQ=255)
                                                                     atgaaatggcCAGCTACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGc                                                                                 <  1:323687/149‑1 (MQ=255)
                                                                         catgacCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTTTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTACAggtgcag                                                                             >  1:475849/1‑144 (MQ=255)
                                                                          atgacCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGaaaa                                                                            <  1:667572/149‑1 (MQ=255)
                                                                          atgacCAGCCACCGGAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGaaaa                                                                            <  2:781761/149‑1 (MQ=255)
                                                                            gacCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACa                                                                          >  2:490773/1‑149 (MQ=255)
                                                                              ccAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTc                                                                                                                                     <  2:19382/88‑1 (MQ=255)
                                                                              ccAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACAtt                                                                        <  2:329128/149‑1 (MQ=255)
                                                                                aGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCCGTTCACTCCCGGTTTGCGCTCTGGTGTGTAAAGTCTAAACCATTCt                                                                      >  2:348707/1‑149 (MQ=255)
                                                                                 gCGACCGTAGCGTCAATTTCCGCTAAGACATGGTTCCGTGTCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTg                                                                     >  2:720069/1‑149 (MQ=255)
                                                                                   gACCGTAGCCTTAATGTCCGATAAGTCAGGGGAAAGCTGCCTGTTTTCGCACTTCCTGGCACCTTCAGTTTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTc                                                                   <  2:580954/149‑1 (MQ=255)
                                                                                      cGTAGCGTCAATTTCCGCTAAGGCATGGTAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCACGATCTCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTc                                                                <  1:33590/149‑1 (MQ=255)
                                                                                        tAGCGTCAACTCCGGACAAGGCATGGGAAAGGTGAGATGTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTCGTGTGTAAAGGCGAAAACATTCTGTCTTCCt                                                              <  1:26438/149‑1 (MQ=255)
                                                                                            gtgaaTTTCCGCTAGGGTATGGGAAAGTGGCCAGTTTTCGCACTCACTGGCGCCTTCATTCTTAATGGCCTGTCTAGCCATCGGGAACGCAGGTCACTCCCGGTTTGCGGTCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTcc                                                          <  2:529385/146‑1 (MQ=255)
                                                                                            gTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTcc                                                          >  2:623908/1‑149 (MQ=255)
                                                                                             tCACTTTCCGCTACGTCATGGGAAAGGTGCCAGTTTCCGCACTCACTGGCACCTTAATTCTTAATGGCCTGGAGCGCCATCAGGCACGCAGTTCACTACCGCTTTGCGATCTGGTATGTAAAGCAGACAACATTCTGTCTTCCTGTCCg                                                         >  2:173003/1‑149 (MQ=255)
                                                                                             tCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCAATCAGGAACGCAGTTCACTCCCGGTTTGCGAGCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCg                                                         >  1:565985/1‑149 (MQ=255)
                                                                                                aTTTCCGCTAAGTCATGGGAAAGGTGCTAGTTTTCCTACTCACTGGGACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCg                                                      <  1:192231/149‑1 (MQ=255)
                                                                                                aTTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCa                                                                                                                            <  1:949410/79‑1 (MQ=255)
                                                                                                      gCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCg                                                <  1:133678/149‑1 (MQ=255)
                                                                                                        tAAGTCATGTGAAAGGTGCCAGTTTTCGCACTCACTGTCACCTTCATTCTTAATGGCCTTTCGAGCCATCAGGAACGCAGTTCACTCCCTGTTTGCTATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGt                                              <  1:1000309/149‑1 (MQ=255)
                                                                                                           gccATGGGAAAGGTGCCAGTTTTCGCACTCCCTGACACCTTCATTCTTAATGGACTGTCGAGCCATCCGGAACGCAGTTCACTCCCGGTTTGCGATCTGGCGTGTAAAGGCGAACACATTCTCTCTCCCTGTCCGTCGATATCGAttcc                                           >  2:443909/3‑147 (MQ=255)
                                                                                                            tCATGGGAAAGGTGGCAGTTTTAGCACTCACTCGCACCTTCATTCTTAATGGCCTGCAGAGCCATCAGGAACGCAGTTCACTGCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCa                                          <  2:100012/149‑1 (MQ=255)
                                                                                                            tCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGCTATCGTTTGCa                                          >  1:102088/1‑149 (MQ=255)
                                                                                                             cATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAg                                         <  1:421345/149‑1 (MQ=255)
                                                                                                               tGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACAtt                                                                        >  2:85904/1‑116 (MQ=255)
                                                                                                                gggAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTc                                      <  1:638994/149‑1 (MQ=255)
                                                                                                                gggAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGACTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTATGTCTTCCTGTCCGTCGATATCGGTTGCAGATc                                      >  2:254817/1‑149 (MQ=255)
                                                                                                                 ggAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCt                                     >  1:432760/1‑149 (MQ=255)
                                                                                                                 ggAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCAGACATCCTGTCCGTCGATAACGGTTGCAGGTca                                     >  1:543654/1‑148 (MQ=255)
                                                                                                                 atgaaggtgccagtgagtgcgaaaactggcaccttCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCt                                     >  2:694150‑M2/36‑149 (MQ=255)
                                                                                                                  gAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTg                                    >  1:360950/1‑149 (MQ=255)
                                                                                                                    AAGGTGCCAGTTTTCGCAATCACTGGCACCTTCATTCTTAATGGGCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATGGGTTGCAGGTCTGGt                                  <  2:671218‑M1/149‑1 (MQ=255)
                                                                                                                      GGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCCCTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTGGTTg                                <  1:506863‑M1/149‑1 (MQ=255)
                                                                                                                       GTGCTAGTATTCGCACGCACTGGAACCTTTATTCTTAATGGCCTGTCGAGCCATCAGGAACGCGGTTCACCCCTGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTGGTTGc                               >  1:90108‑M1/1‑149 (MQ=255)
                                                                                                                       GTGCCGGTTTTCGCATTCACTGGCACCTTCATTCTTAGTGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTTTTCCTGTCCGTCGATATCGGTTGCAGGTCTGGTTGc                               >  2:605680‑M1/1‑149 (MQ=255)
                                                                                                                       GTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGAACTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCTATATCGGTTGCAGGTGTGGTTGc                               <  2:47306‑M1/149‑1 (MQ=255)
                                                                                                                        TGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTGGTTGcc                              <  1:766144‑M1/149‑1 (MQ=255)
                                                                                                                        TGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTGGTTGc                               >  2:556066‑M1/1‑148 (MQ=255)
                                                                                                                         gCCAGTTTTCGCACTCAGTGGCACCTTCATTCTTAAGTGCCTGTCAAGCCATCAAGAACGCAGTTCACTCCCGGTTTGCCATCTGGTGTGTAAAAGCGAAAACATGCTGTCTTCCTCTCCGTACTTACCGGTTTCCGGTCTGGTTGCCt                             >  2:92450/1‑149 (MQ=255)
                                                                                                                         GCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCTTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTGGTTGCCt                             >  1:149747‑M1/1‑149 (MQ=255)
                                                                                                                          CCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTTGTTGCCTg                            <  1:298098‑M1/149‑1 (MQ=255)
                                                                                                                           ctgtgttCGCACTCACTGTCACCTTCTTTCTTAATGGTCTTTCCAGCCCTCAGCAACGCAGTTCACTCCCGGTTTGCGATCTGTTGTTTAAAGGCGAAAACATTCTGTCTTCCTTTCCGTCGATATCGGTTGCAGGTCTTGTTGCCTGa                           <  2:738055/144‑1 (MQ=255)
                                                                                                                            AGTTTTCGCACTTACTTGCACTTTCATTCTTAATTGCCTGTCGTGCCATCTGGTATGTAGTTCACTCGCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTGGTTGCCTGAg                          >  1:494522‑M1/1‑149 (MQ=255)
                                                                                                                            AGTTTTCGCACTCACTGGCACCTTTATTCCTAATGGCCTTTCGAGCCATCAGGAACGCAGTTCGCTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTGGTTGCCTGAg                          >  1:525133‑M1/1‑149 (MQ=255)
                                                                                                                            AGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTGGTTGCCTgat                          <  2:388312‑M1/149‑2 (MQ=255)
                                                                                                                                ttCGCACTCACGGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTTTGGTTGCCTGAGCGAc                      <  1:877075/149‑1 (MQ=255)
                                                                                                                                     atccactGGCACCTTCACTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTTTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTGGTTGCCTGAGCGACTGGGc                 <  2:812720/146‑1 (MQ=255)
                                                                                                                                          ctgcctccttCATTCTTAATGGCGTGGCGAGCTATCAGGAACGCAGTTCACGCCCGGTTTGCGAGCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTGGTTGCCTGAGCGACTGGGCcatca            <  1:61025‑M2/139‑1 (MQ=255)
                                                                                                                                            ggcaccttCATTCTTAATGGCCTGTAGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTGCGTCGATATCGGTTGCAGGTCTGGTTAGCTGAGCAACTTGGCCATCAtt          >  2:122666‑M2/9‑149 (MQ=255)
                                                                                                                                             gcaccttCATTCTTAATGGTCTGTCTATCTTTCAGGAACTCAGTTCACTCCCGGTTTGCGACCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTGGTTGCCTGAGCGACTGGGCCATCATTg         <  1:600098‑M2/142‑1 (MQ=255)
                                                                                                                                                 cttCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTGGCTAGCGGTTTCAGGTCTGGTTGCCTGGGCGACTGGGCCATTGTTGGGCt     >  1:238239‑M2/4‑149 (MQ=255)
                                                                                                                                                 cttCATTCTTAATGGCCTGTCGAGCCATAAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTGGTTGCCTGGGCGACTGGGCCATCATTGGGCt     >  2:64277‑M2/4‑149 (MQ=255)
                                                                                                                                                  ttCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCa                                          >  2:973524‑M2/3‑111 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
GTGCGGCGATTGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGTAGCGTCAATTTCCGCTAAGTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTCACTCCCGGTTTGCGATCTGGTGTGTAAAGGCGAAAACATTCTGTCTTCCTGTCCGTCGATATCGGTTGCAGGTCTGGTTGCCTGAGCGACTGGGCCATCATTGGGCTGGA  >  NC_000913_3_hsa_pgi/4239652‑4239948

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.