| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | 4045637 = | 172 (1.270) | 11 (0.090) | 11/258 | 16.0 | 6.4% | intergenic (+8/+33) | yihF/yihG | DUF945 family protein/inner membrane protein, inner membrane acyltransferase |
| ? | NC_000913_3_KO_pgi | 4045665 = | 161 (1.290) | intergenic (+36/+5) | yihF/yihG | DUF945 family protein/inner membrane protein, inner membrane acyltransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTACATGGCGACTACATCAATGACAAAAGCTTTAAGCGCCATTTTCAGCAATGGCTGAACTCATTGTGGCAGGAAAAAGACCGGCTTCTGACGTCTCTCATGTCATCACAGCGTCAGAATAAGTAAGTTTTACTCGCCTCTGAATGAGCAGAGGCGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_KO_pgi/4045795‑4045637‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagaggcgagtAAAACTTACTTATTCTGACGCTGTGATGACATGAGAGACGTCAGAAGCCGGTCTTTTTCCTGCCACAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCT > NC_000913_3_KO_pgi/4045665‑4045812 TTACATGGCGACTACATCAATGACAAAAGCTTTAAGCGCCATTTTCAGCAATGGCTGAACTCATTGTGGCAGGAAAAAGACCGGCTTCTGACGTCTCTCATGTCATCACAGCGTCAGAATAAGTAAGTTTTACTCGCCTCTGAATGAGCA > 4:510252/1‑150 TACATGGCGACTACATCAATGACAAAAGCTTTAAGCGCCATTTTCAGCAATGGCTGAACTCATTGTGGCAGGAAAAAGACCGGCTTCTGACGTCTCTCATGTCATCACAGCGTCAGAATAAGTAAGTTTTACTCGCCTCTGAATGAGCAG < 1:596847/150‑1 ACATGGCGACTACATCAATGACAAAAGCTTTAAGCGCCATTTTCAGCAATGGCTGAACTCATTGTGGCAGGAAAAAGACCGGCTTCTGACGTCTCTCATGTCATCACAGCGTCAGAATAAGTAAGTTTTACTCGCCTCTGAATGAGCAGA > 1:28560/1‑150 ACATGGCGACTACATCAATGACAAAAGCTTTAAGCGCCATTTTCAGCAATGGCTGAACTCATTGTGGAAGGAAAAAGACCGGCTTCTGACGTCTCTCATGTCATCACAGCGTCAGAATAAGTAAGTTTTACTCGCCTCTGAATGAGCAGA > 2:584271/1‑150 CATGGCGACTACATCAATGACAAAAGCTTTAAGCGCCATTTTCAGCAATGGCTGAACTCATTGTGGCAGGAAAAAGACCGGCTTCTGACGTCTCTCATGTCATCACAGCGTCAGAATAAGTAAGTTTTACTCGCCTCTGAATGAGCAGAG > 4:471720/1‑150 ATGGCGACTACATCAATGACAAAAGCTTTAAGCGCCATTTTCAGCAATGGCTGAACTCATTGTGGCAGGAAAAAGACCGGCTTCTGACGTCTCTCATGTCATCACAGCGTCAGAATAAGTAAGTTTTACTCGCCTCTGAATGAGCAGAGG > 2:977878/1‑150 TGGCGACTACATCAATGACAAAAGCTTTAAGCGCCATTTTCAGCAATGGCTGAACTCATTGTGGCAGGAAAAAGACCGGCTTCTGACGTCTCTCATGTCATCACAGCGTCAGAATAAGTAAGTTTTACTCGCCTCTGAATGAGCAGAGGC < 4:402506/150‑1 TGGCGACTACATCAATGACAAAAGCTTTAAGCGCCATTTTCAGCAATGGCTGAACTCATTGTGGCAGGAAAAAGACCGGCTTCTGACGTCTCTCATGTCATCACAGCGTCAGAATAAGTAAGTTTTACTCGCCTCTGAATGAGCAGAGGC > 3:402506/1‑150 TGGCGACTACATCAATGACAAAAGCTTTAAGCGCCATTTTCAGCAATGGCTGAACTCATTGTGGCAGGAAAAAGACCGGCTTCTGACGTCTCTCATGTCATCACAGCGTCAGAATAAGTAAGTTTTACTCGCCTCTGAATGAGCAGAGGC > 3:567962/1‑150 GGCGACTACATCAATGACAAAAGCTTTAAGCGCCATTTTCAGCAATGGCTGAACTCATTGTGGCAGGAAAAAGACCGGCTTCTGACGTCTCTCATGTCATCACAGCGTCAGAATAAGTAAGTTTTACTCGCCTCTGAATGAGCAGAGGCG > 1:310386/1‑150 GCGACTACATCAATGACAAAAGCTTTAAGCGCCATTTTCAGCAATGGCTGAACTCATTGTGGCAGGAAAAAGACCGGCTTCTGACGTCTCTCATGTCATCACAGCGTCAGAATAAGTAAGTTTTACTCGCCTCTGAATGAGCAGAGGCGA > 4:193435/1‑150 GACTACATCAATGACAAAAGCTTTAAGCGCCATTTTCAGCAATGGCTGAACTCATTGTGGCAGGAAAAAGACCGGCTTCTGACGTCTCTCATGTCATCACAGCGTCAGAATAAGTAAGTTTTACTCGCCTCTGAATGAGCAGAGGCGAGT > 2:557231/1‑150 GACTACATCAATGACAAAAGCTTTAAGCGCCATTTTCAGCAATGGCTGAACTCATTGTGGCAGGAAAAAGACCGGCTTCTGACGTCTCTCATGCCATCACAGCGTCAGAATAAGTAAGTTTTACTCGCCTCTGAATGAGCAGAGGCGAGT < 1:431269/150‑1 CATCAATGACAAAAGCTTTAAGCGCCATTTTCAGCAATGGCTGAACTCATTGTGGCAGGAAAAAGACCGGCTTCTGACGTCTCTCATGTCATCACAGCGTCAGAATAAGTAAGTTTTACTCGCCTCTGAATGAGCAGA > 2:1226793/1‑138 CATCAATGACAAAAGCTTTAAGCGCCATTTTCAGCAATGGCTGAACTCATTGTGGCAGGAAAAAGACCGGCTTCTGACGTCTCTCATGTCATCACAGCGTCAGAATAAGTAAGTTTTACTCGCCTCTGAATGAGCAGA < 1:1226793/138‑1 ACTCATTGTGGCAGGAAAAAGACCGGCTTCTGACGTCTCTCATGTCATCACAGCGTCAGAATAAGTAAGTTTTACTCGCCTCTGAATGAGCAGAG > 1:779910/1‑95 ACTCATTGTGGCAGGAAAAAGACCGGCTTCTGACGTCTCTCATGTCATCACAGCGTCAGAATAAGTAAGTTTTACTCGCCTCTGAATGAGCAGAG < 2:779910/95‑1 CGGCTTCTGACGTCTCTCATGTCATCACAGCGTCAGAATAAGTAAGTTTTACTCGCCTCTGAATGAGCAGAGGCGAGTAAAACTTACTTATTCTGACGCTGTGATGACATGAGAGACGTCAGAAGCCGGTCTTTTTCCTGCCACAATGAG > 1:251518/1‑150 TCTCATGTCATCACAGCGTCAGAATAAGTAAGTTTTACTCGCCTCTGAATGAGCAGAGGCGAGTAAAACTTACTTATTCTGACGCTGTGATGACATGAGAGACGTCAGAAGCCGGTCTTTTTCCTGCCACAATGAGTTCAGCCATTGCTG > 1:269774/1‑150 GTAAGTTTTACTCGCCTCTGAATGAGCAGAGGCGAGTAAAACTTACTTATTCTGACGCTGTGATGACATGAGAGACGTCAGAAGCCGGTCTTTTTCCTGCCACAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATT > 1:369878/1‑150 TAAGTTTTACTCGCCTCTGAATGAGCAGAGGCGAGTAAAACTTACTTATTCTGACGCTGTGATGACATGAGAGACGTCAGAAGCCGGTCTTTTTCCTGCCACAATGAGTTCA > 1:541784/1‑112 TAAGTTTTACTCGCCTCTGAATGAGCAGAGGCGAGTAAAACTTACTTATTCTGACGCTGTGATGACATGAGAGACGTCAGAAGCCGGTCTTTTTCCTGCCACAATGAGTTCA < 2:541784/112‑1 TTACTCGCCTCTGAATGAGCAGAGGCGAGTAAAACTTACTTATTCTGACGCTGTGATGACATGAGAGACGTCAGAAGCCGGTCTTTTTCCT < 4:59126/91‑1 TTACTCGCCTCTGAATGAGCAGAGGCGAGTAAAACTTACTTATTCTGACGCTGTGATGACATGAGAGACGTCAGAAGCCGGTCTTTTTCCT > 3:59126/1‑91 ACTCGCCTCTGAATGAGCAGAGGCGAGTAAAACTTACTTATTCTGACGCTGTGATGACATGAGAGACGTCAGAAGCCGGTCTTTTTCCTGCCACAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTC < 2:251518/150‑1 TCGCCTCTGAATGAGCAGAGGCGAGTAAAACTTACTTATTCTGACGCTGTGATGACATGAGAGACGTCAGAAGCCGGTCTTTTTCCTGCCACAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGC > 2:259761/1‑150 CTCTGAATGAGCAGAGGCGAGTAAAACTTACTTATTCTGAC < 3:409935/41‑1 CTCTGAATGAGCAGAGGCGAGTAAAACTTACTTATTCTGAC > 4:409935/1‑41 CAGAGGCGAGTAAAACGTACTTATTCTGACGCTGTGATGAGATGAGAGACGTCAGAAGCCGGTCTTTTTCCTGCCACCATGAGTTCAGCCATCGCTCAAAATGGAGCTTACAGCTTTTGTCATTGATGTTGTCGCCGTGTAACTCATCGG > 2:1109887/1‑150 GAGGCGAGTAAAACTTACTTATTCTGACGCTGTGATGACATGAGAGACGTCAGAAGCCGGTCTTTTTCCTGCCACAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCA > 1:1240351/1‑150 GCGAGTAAAACTTACTTATTCTGACGCTGTGATGACATGAGAGACGTCAGAAGCCGGTCTTTTTCCTGCCACAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATA < 3:894634/150‑1 GCGAGTAAAACTTACTTATTCTGACGCTGTGATGACATGAGAGACGTCAGAAGCCGGTCTTTTTCCTGCCACAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATA < 4:303092/150‑1 GCGAGTAAAACTTACTTATTCTGACGCTGTGATGACATGAGAGACGTCAGAAGCCGGTCTTTTTCCTGCCACAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGC > 2:920097/1‑130 GCGAGTAAAACTTACTTATTCTGACGCTGTGATGACATGAGAGACGTCAGAAGCCGGTCTTTTTCCTGCCACAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGC < 1:920097/130‑1 GAGTAAAACTTACTTATTCTGACGCTGTGATGACATGAGAGACGTCAGAAGCCGGTCTTTTTCCTGCCACAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGG < 1:760846/150‑1 AGTAAAACTTACTTATTCTGACGCTGTGATGACATGAGAGACGTCAGAAGCCGGTCTTTTTCCTGCCACAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGC < 2:369878/150‑1 GTAAAACTTACTTATTCTGACGCTGTGATGACATGAGAGACGTCAGAAGCCGGTCTTTTTCCTGCCACAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCT < 2:1247170/150‑1 GTAAAACTTACTTATTCTGACGCTGTGATGACATGAGAGACGTCAGAAGCCGGTCTTTTTCCTGCCACAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCT < 1:311000/150‑1 GTAAAACTTACTTATTCTGACGCTGTGATGACATGAGAGACGTCAGAAGCCGGTCTTTTTCCTGCCACAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCT > 1:1146408/1‑150 TTACATGGCGACTACATCAATGACAAAAGCTTTAAGCGCCATTTTCAGCAATGGCTGAACTCATTGTGGCAGGAAAAAGACCGGCTTCTGACGTCTCTCATGTCATCACAGCGTCAGAATAAGTAAGTTTTACTCGCCTCTGAATGAGCAGAGGCGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_KO_pgi/4045795‑4045637‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagaggcgagtAAAACTTACTTATTCTGACGCTGTGATGACATGAGAGACGTCAGAAGCCGGTCTTTTTCCTGCCACAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCT > NC_000913_3_KO_pgi/4045665‑4045812 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |