| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | = 4177170 | 128 (0.940) | 11 (0.090) | 11/256 | 15.9 | 8.5% | intergenic (+42/‑188) | tufB/secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| ? | NC_000913_3_KO_pgi | = 4177172 | 121 (0.980) | intergenic (+44/‑186) | tufB/secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CATCAAAATGGTTGTTACCCTGATCCACCCGATCGCGATGGACGACGGTCTGCGTTTCGCAATCCGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_KO_pgi/4177011‑4177170‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagggcatcaAATGATGCCCTTTTAGTGCGCATTGCGTCAAATGTTATCGGCAATTAGCTCAGAACTTTTGCTACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAAC < NC_000913_3_KO_pgi/4177172‑4177024 CATCAAAATGGTTGTTACCCTGATCCACCCGATCGCGATGGACGACGGTCTGCGTTTCGCAATCCGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAA > 2:592766/1‑150CATCAAAATGGTTGTTACCCTGATCCACCCGATCGCGATGGACGACGGTCTGCGTTTCGCAATCCGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAA > 4:508299/1‑150 ATCAAAATGGTTGTTACCCTGATCCACCCGATCGCGATGGACGACGGTCTGCGTTTCGCAATCCGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAA > 1:27914/1‑150 TCAAAATGGTTGTTACCCTGATCCACCCGATCGCGATGGACGACGGTCTGCGTTTCGCAATCCGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAA > 1:984510/1‑150 CAAAATGGTTGTTACCCTGATCCACCCGATCGCGATGGACGACGGTCTGCGTTTCGCAATCCGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAG < 1:1374541/150‑1 AAAATGGTTGTTACCCTGATCCACCCGATCGCGATGGACGACGGTCTGCGTTTCGCAATCCGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGG < 1:524350/150‑1 AAAATGGTTGTTACCCTGATCCACCCGATCGCGATGGACGACGGTCTGCGTTTCGCAATCCGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGG > 1:579367/1‑150 AAAATGGTTGTTACCCTGATCCACCCGATCGCGATGGACGACGGTCTGCGTTTCGCAATCCGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGG < 1:79627/150‑1 AAATGGTTGTTACCCTGATCCACCCGATCGCGATGGACGACGGTCTGCGTTTCGCAATCCGTGGGGGCTGCCGGACGGGTTGCTCGGTCGTTGTAGCAAAAGTGCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGG > 1:136379/1‑150 GATCCACCCGATCGCGATGGACGACGGTCTGCGTTTCGCAATCCGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCAAATGATGCCCT < 4:496315/150‑1 ATCCACCCGATCGCGATGGACGACGGTCTGCGTTTCGCAATCCGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCAAATGATGCCCTT < 1:595273/150‑1 CCACCCGATCGCGATGGACGACGGTCTGCGTTTCGCAATCCGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCAAATGATGCCCTTTT < 3:856313/150‑1 CACCCGATCGCGATGGACGACGGTCTGCGTTTCGCAATCCGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCAAATGATGCCCTTTTA < 2:602572/150‑1 TTTCGCAATCCGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCAAATGATGCCCTTTTAGTGCGCATTGCGTCAAATGTTATCGGCAA < 1:551793/150‑1 CCGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTCACGCAATGCGCACTAAAAGGGCATCAAA < 2:618222/99‑1 CCGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTCACGCAATGCGCACTAAAAGGGCATCAAA > 1:618222/1‑99 GCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCAAATGATGCCCTTTTAGTGCGCATTGCGTCAAATGTTATCGGCAATTAGCTCAGAACTTTTG < 1:1052195/150‑1 GCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCAAATGATGCCCTTTTAGTGCGCATTGCGTCAAATGTTATC < 1:761166/111‑1 GCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCAAATGATGCCCTTTTAGTGCGCATTGCGTCAAATGTTATC > 2:761166/1‑111 TAAAAGGGCATCAAATGATGCCCTTTTAGTGCGCATTGCGTCAAATGTTATCGGCAATTAGCTCAGAACTTTTGCTACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTG > 3:233811/1‑150 AAAAGGGCATCAAATGATGCCCTTTTAGTGCGCATTGCGTCAAATGTTATCGGCAATTAGCTCAGAACTTTTGCTACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGG < 2:1254978/150‑1 AAAAGGGCATCAAATGATGCCCTTTTAGTGCGCATTGCGTCAAATGTTATCGGCAATTAGCTCAGAACTTTTGCTACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCG > 4:763929/1‑117 AAAAGGGCATCAAATGATGCCCTTTTAGTGCGCATTGCGTCAAATGTTATCGGCAATTAGCTCAGAACTTTTGCTACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCG < 3:763929/117‑1 AAAGGGCATCAAATGATGCCCTTTTAGTGCGCATTGCGTCAAATGTTATCGGCAATTAGCTCAGAACTTTTGCTACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGA < 4:870182/150‑1 AAAGGGCATCAAATGATGCCCTTTTAGTGCGCATTGCGTCAAATGTTATCGGCAATTAGCTCAGAACTTTTGCTACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATAAAGACATATTGATCTTCTTCCATCGCGATCGGGTGGA < 2:1081202/150‑1 GCATCAAATGATGCCGTTTTAGGGCGCATTGCGTCAAAGGTTATCGCCAATTATCTCAGAACTTTTGCTACAACGCCCGCGCCAACGGTACGGCCGGCTTCACGGAGTGCGGAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGG < 2:347818/150‑1 CATCAAATGATGCCCTTTTAGTGCGCATTGCGTCAAATGTTATCGGCAATTAGCTCAGAACTTTTGCTGCAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGG < 2:61914/150‑1 ATCAAATGATGCCCTTTTAGTGCGCATTGCGTCAAATGTTATCGGCAATTAGCTCAGAACTTTTGCTACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGA < 3:61147/143‑1 ATCAAATGATGCCCTTTTAGTGCGCATTGCGTCAAATGTTATCGGCAATTAGCTCAGAACTTTTGCTACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGA > 4:61147/1‑143 TCAAATGATGCCCTTTTAGTGCGCATTGCGTCAAATGTTATCGGCAATTAGCTCAGAACTTTTGCTACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTA > 1:642102/1‑150 AAATGATGCCCTTTTAGTGCGCATTGCGTCAAATGTTATCGGCAATTAGCTCAGAACTTTTGCTACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAAC > 1:1359454/1‑150 CATCAAAATGGTTGTTACCCTGATCCACCCGATCGCGATGGACGACGGTCTGCGTTTCGCAATCCGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_KO_pgi/4177011‑4177170‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagggcatcaAATGATGCCCTTTTAGTGCGCATTGCGTCAAATGTTATCGGCAATTAGCTCAGAACTTTTGCTACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAAC < NC_000913_3_KO_pgi/4177172‑4177024 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |