| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | = 2662574 | NA (NA) | 7 (0.210) +CTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCG |
4/188 | 5.2 | NA | noncoding (266/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913_3_KO_pgi | = 2662583 | NA (NA) | coding (741/741 nt) | trmJ | tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGGTTTTCACGGATAAA > NC_000913_3_KO_pgi/2662441‑2662729 | ttCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCAGATGCGGCGGGAACCCCTTATCCGACCTACGATTCTGGTCACTGTAGGCCGGAGGAGACGCA‑TCACCCGCCTCATCCGCCGACGGCTGTTaacca > 2:645523/1‑145 (MQ=11) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCgg < 1:745156/149‑1 (MQ=35) tGTAGGCCTGATAAGACGCATTACGCGTCACAACAAGGAGCTGCTGTCTGATGCGCCGTGAACGACTTATCCGACCTACGGGTCTGTTCACTGTATGCCCCATGAGA‑GCACTTACGCGCCGCATCATGCGCCGGCGGTTATTCTGGCtt > 2:874509/1‑149 (MQ=2) tAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGt < 2:880189/149‑1 (MQ=40) gCCTGATAAGGCGCATTCCCCGTCGCATCCGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTAc < 1:49105/149‑1 (MQ=255) aaGACGCGTTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGTCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTAtt < 1:353013/149‑1 (MQ=255) ccgttttACGCGGCGCGGCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGCCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctg < 2:380912/144‑1 (MQ=17) cATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctactg < 1:863938/149‑1 (MQ=255) ttACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTgctgct > 1:570280/1‑149 (MQ=255) ggTCGCATAAGGCAACGGCTGTCGGATGCGGCGTTAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTATGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATa < 2:720078/148‑1 (MQ=255) gTCGCATCAGGAAACGGCTGTCGGATGCGGCGTGAACGCCTTCTTCGACCTACGGTTCTGTTAACTGTGGGCCTGATAAGCAGCA‑TTACGCGTCGGATATGGCGACGGCTGTTCTTCGGCCTTGTTAGCTTTAATGTGATGCCCAATac > 2:732502/1‑148 (MQ=14) cGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGaa < 1:89517/149‑1 (MQ=255) aTCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGATCAATAGCAGcc > 2:91807/1‑149 (MQ=255) tCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCa < 1:16494/149‑1 (MQ=255) aGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGa > 1:857109/1‑149 (MQ=255) gCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGTCAACGGCTGTTATTCGCGCTTGGTACCCTTATTCCGCTGCACAATAGGAGTCACAAt > 2:289968/1‑149 (MQ=14) aaCGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGAGGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCCATAGAAGCCAGAAtgc > 2:744086/1‑147 (MQ=255) gATGCGGCGGTAACGCCTGATCGGACCTCTGGTACTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGata < 2:125883/149‑1 (MQ=25) tGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATAtt < 2:13699/149‑1 (MQ=255) gcggctTGAACCCCTCATCCGGCCTACGGTTTCGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGCCTCATCACGCAACTGCTGTTATTCGGCCTTGTTACCTTTTTTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTc < 2:145835/149‑1 (MQ=25) ggcgTGAAGGGCTTATCCGGCCTAGGGTTCTGTTCGCTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCaa < 2:86726/149‑1 (MQ=25) ccgTGAATGCCTTGGCCGACCTACGGTTCTATTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCCCAATAGAAGCCAGAATCCCGCCCCGGATCTTCAAc > 2:689214/2‑149 (MQ=21) cGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTa < 2:900366/97‑1 (MQ=255) cGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTa > 1:900366/1‑97 (MQ=255) cTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCttt < 1:289968/149‑1 (MQ=255) tCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCgg > 1:431755/1‑149 (MQ=255) gACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGgcg > 1:41827/1‑149 (MQ=255) tACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCaa > 2:718203/1‑127 (MQ=255) tACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCaa < 1:718203/127‑1 (MQ=255) ttatGTCCACTGTAGGCTTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAACCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGt < 1:502217/146‑1 (MQ=255) gTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAAc > 1:627910/1‑149 (MQ=255) gtCAATGTAGGCCTGATAAGACGCA‑TTACGCGACGCATCAGACAAAAACGAAAATTCGGCCTTGTTACCTTTATTCTGCGGCTCAATAGAAGCCTGAATACCGCGCAGGATATTCAACTCCTGGCTTTCCAGACGCGCAAGGGTAAACa > 2:685143/2‑149 (MQ=25) gTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGgc < 2:145535/149‑1 (MQ=255) agagtccTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGgc < 2:447153/144‑1 (MQ=255) tAGGCCTGATAAGACGCA‑TTACGCGTCGCATTAGGCAACGGCTTTTATTCGGCCTTGTTACCTTTATTCTGCTGCCCAATAGAAGCCACAATCCCGCCCAGAATCTTAAACTCCTTGCGTTCCTGGCCCGCACAGGGAACCAGCCGgcg > 2:120710/1‑149 (MQ=25) ggCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAGACAGACGGCGCa > 1:652521/1‑149 (MQ=255) cTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAAtt > 1:103056/1‑149 (MQ=255) gATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTa < 1:50272/149‑1 (MQ=255) tAAGACGCA‑TTACGCGTAGTATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTAtt < 2:166839/149‑1 (MQ=255) gACGCA‑TTACGCGTCGCATCAGGCAAAGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACTGGGCAATATATtcat > 2:240155/1‑149 (MQ=255) aCGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAACCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTCAACAGAAGGCGCAATTTATtcatc > 1:905658/1‑149 (MQ=255) tCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGa < 2:368717/149‑1 (MQ=255) tCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGa < 1:789378/149‑1 (MQ=255) gCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATg < 2:648962/149‑1 (MQ=255) aGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGGtttt < 1:54171/149‑1 (MQ=255) cAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGCTATTCAACTCCGGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTAATCGCCTGCCCCGGGGGGTTTTCAc > 1:730291/1‑149 (MQ=255) aaCGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGGTTTTCACg < 1:647077/149‑1 (MQ=255) aCGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGGTTTTCACgg < 1:580953/149‑1 (MQ=255) ggCTGTTGTTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCCGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGTGCGCGCACGGGTAAACAGACGGCGCACTTTAGTCTACACGTGCCCGGATTAGTTTGCACgcgc > 2:236920/1‑146 (MQ=255) tGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGGTTTACACGGATaaa > 1:798047/1‑149 (MQ=255) | TTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCA‑TTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCAGAATCCCGCGCAGGATATTCAACTCCTGGCTTTCCGGGCGCGCACGGGTAAACAGACGGCGCAATTTATTCATCACCTGCCCCGGATGGTTTTCACGGATAAA > NC_000913_3_KO_pgi/2662441‑2662729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |