| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | 1207790 = | 8 (0.160) | 48 (1.060) | 40/254 | 0.2 | 89.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_KO_pgi | 1209619 = | 4 (0.090) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
TTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGC > NC_000913_3_KO_pgi/1209471‑1209765 | ccattggcatatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaac < 1:37113‑M2/1‑1 (MQ=255) atgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgagtcctaatgtagcagttgctgcattgagttttgctccttctcccaacccaaCGTTTATGaaa > 2:804128‑M2/139‑149 (MQ=255) atgcttttgcggcattccacccccacggaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaaa < 1:143817‑M2/11‑1 (MQ=255) ttttgcggcattccacccccactgaatgattactgattgctcaatacaacgttttttaaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATga > 1:627292‑M2/135‑149 (MQ=255) tttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcctaaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgggttttgctccttctcccaaaccaaCG‑TTATGAAAATgaag > 2:36020‑M2/134‑149 (MQ=255) tttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaacccaaCGTTTATGAAAATgaa > 2:887333‑M2/134‑149 (MQ=255) cggcagtccgcccccactgaatgcttagtgattgctcaataccaccaatcataaccggtacagttatgaaaccggtgcgtcctaatgtagccgttgctgcattgatttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGaaa < 2:11221‑M2/20‑1 (MQ=255) ggcattccacccccactgaatgattactgattgctcaatacaaccaatcataaccggtctaactatgaaaccggtgcgtcctaatgtacccgtttctgcatcgagttttgctccatctccccaacccaCGTATATGaaactgaacatat > 2:319625‑M2/129‑144 (MQ=255) ctgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGca > 1:225545‑M2/114‑149 (MQ=255) tgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcat > 2:446291‑M2/113‑149 (MQ=255) tgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaacgtagccgttgcagcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcat < 2:18232‑M2/37‑1 (MQ=255) tgaacgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcgcaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcat < 2:149006‑M2/37‑1 (MQ=255) gctgatcgctcaataccacagatcagaaccggtagagctaggaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttgtctcaaaccgaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 2:395700‑M2/46‑1 (MQ=255) ctgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt < 2:729845‑M2/47‑1 (MQ=255) ctgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt > 1:729845‑M2/103‑149 (MQ=255) attgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtttt > 1:814202‑M2/100‑149 (MQ=255) attgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAAAAAGCAAATGGCATCATTCCTGCtttt > 1:114452‑M2/100‑149 (MQ=255) ttgctcaataccacccatcataaccgggatagctatgaaaccgtttcgtcctaatgtagccgttgctgcattaagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa > 2:307500‑M2/99‑149 (MQ=255) tcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACTAg > 2:902585‑M2/95‑149 (MQ=255) tcaataccaccaatcataaccggtatagctatgaaaccggtgcgtactaatgtaaccgttactgcattgaggtttgctccttcgcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAAGAGCATCATTCCTGCTTTTACCAg > 2:107490‑M2/95‑149 (MQ=255) tcaataccaccaatcataaccggtatagctatgaaaccgatgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGCAATAACAACGACACGCCATCATTCCTGCTTTTACCAg > 2:43378‑M2/95‑149 (MQ=255) ataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCGTGCTTTTACCAgggg > 1:590728‑M2/92‑149 (MQ=255) taccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAACAAATGGCATCATTCCTGCTTTTACCCggggg > 1:374270‑M2/91‑149 (MQ=255) accaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCATGCTTTTACCAGGGGGAttt > 1:406324‑M2/87‑149 (MQ=255) caatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTCTGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa > 1:663799‑M2/85‑149 (MQ=255) atcagaaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa < 2:277740‑M2/67‑1 (MQ=255) ataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGc > 1:331873‑M2/80‑149 (MQ=255) taaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCt > 1:873923‑M2/79‑149 (MQ=255) accggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAACAGGGGGATTTAACATGCTTa > 2:151462‑M2/77‑149 (MQ=255) gggagagctatgaaaccggtccgtcctaatgtcgccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATCCCTGCTCTTACCAGGGGGATTTAACATGCTTATTg < 2:697918‑M2/76‑1 (MQ=255) atagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACCAGCAAATGCCTGCATTACTGCTTTTACCAGGGGGATTTAACATGCTTGTTGGCt > 2:319884‑M2/71‑149 (MQ=255) tagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCACATGGCATCATTCCTGCTTTTACCAGGGGGCTTTAACATGATTATTGGctc > 1:139389‑M2/70‑148 (MQ=255) ctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaac < 1:652355‑M2/1‑1 (MQ=255) ctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaac > 2:652355‑M2/67‑67 (MQ=255) ctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAAGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGt > 1:907080‑M2/67‑149 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTa > 1:664337‑M2/66‑149 (MQ=255) tatgaaaccggtgcgtcctaatgtagcagttgctgcattgagttttgctccttctcccaaaccaaCGATTATGAAAATGAAGAAGTAACAAGCAAATGGCATCATTCCTGTTTTTATCAGGGGGATTTAACATGCTTATTGGGTATTTa > 1:819269‑M2/66‑149 (MQ=255) aaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgcg > 1:785438‑M2/62‑149 (MQ=255) gAAGGCCACGGAACAGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaa < 1:145527/149‑1 (MQ=255) tgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaac < 1:772298‑M2/95‑1 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGa < 1:760728/149‑1 (MQ=255) tagccgttgttgcactgagttttgctccttctcccaaacaaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAGCAGGAGAAGTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa < 2:830073‑M2/107‑1 (MQ=255) ccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAacac > 2:11681‑M2/40‑149 (MQ=255) gttgctgcattaagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCATATTGGCTATGTACGCGTATACACAAATGACCAGAACACAg > 2:181080‑M2/38‑149 (MQ=255) ttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGa < 1:570506‑M2/113‑1 (MQ=255) tgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt < 1:446291‑M2/114‑1 (MQ=255) ctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCt > 1:550111‑M2/34‑149 (MQ=255) ttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAc > 1:174103‑M2/29‑149 (MQ=255) ttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAAt > 2:844020‑M2/24‑149 (MQ=255) ttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgc < 1:495320‑M2/128‑1 (MQ=255) cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAAGGTCATCATTCCTGCTTTTACCAGGGTGATTTAACATGCTTATTGGCTATGTACGCTTATCAACAAATGACCAGAACACAGATCTACAACGTAAttc < 2:438764/149‑3 (MQ=255) gagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgcgc > 2:402501/1‑149 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa > 1:272188‑M2/16‑149 (MQ=255) ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAAc > 1:877012‑M2/15‑149 (MQ=255) aaaCGTTTTTGAAAATGAAGGATCTTCGAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATg < 2:907080‑M2/146‑1 (MQ=255) aaCTTTTATGAAAAGGAAGAAAAAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGTTCTACAACGTAATGCGCTGAACTGTGCAGGATGc < 2:905719‑M2/147‑1 (MQ=255) | TTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGC > NC_000913_3_KO_pgi/1209471‑1209765 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |