New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	225456 =	4 (0.100)	6 (0.160)	6/264	4.2	61.6%	noncoding (76/77 nt)	ileV	tRNA‑Ile
	?	NC_000913_3_pae_pgi	= 3427056	NA (NA)					intergenic (‑23/+20)	alaU/ileU	tRNA‑Ala/tRNA‑Ile
Rejected: Coverage evenness skew score above cutoff.

CAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTGGTTCAAGTCCACTCAGGCCTACCAAATTTGCACGGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGGTTAAATA  >  NC_000913_3_pae_pgi/225333‑225594                                                                                                                            |                                                                                                                                           aagggcgcacacaGATTGTCGGATGAAAATGAGGAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATTAGGGTGAGGTCGGTGGTTCAAGTCCACTCAGGCCTACCAAATTTGCACGGCAAATTTGAagag                                                                                                                   <  2:559341/142‑1 (MQ=11)                                                                                                             tCCACTCAGGCCTACCAAATTTGCACGGCAAATTTGAAGAGGTTTTAACTCCATGTTATGGGGCTGTAGCTCCGCTGGGAGAGGGCCTGCTTTGCACGCAAGAGGTCTCAGGTTCGACCCCGCATAGCTCCACCATCTCCGTAGTggat       >  1:389875/1‑147 (MQ=11)                                                                                                                aCTCAGGCCTACCAAATTTGCACGGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGGTtaaa    >  1:196000/1‑149 (MQ=32)                                                                                                                  tCAGGCCTACCAAATTTGCACGGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCGGGGAGGGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTGGATCGCGCATATGTCCACAATCCCTGTAGTTGTtacata  >  2:379644/1‑149 (MQ=11)                                                                                                                            |                                                                                                                                           CAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTGGTTCAAGTCCACTCAGGCCTACCAAATTTGCACGGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGGTTAAATA  >  NC_000913_3_pae_pgi/225333‑225594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.