| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 526,792 | 0 | A | C | 26.5% | 118.8 / 33.9 | 68 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Reads supporting (aligned to +/- strand): ref base A (24/26); new base C (11/7); total (35/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.15e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.15e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAGGGCTGTACTATAACCGTCACCGGTACTACGATCCGT > NC_000913_3_pae_pgi/526647‑526930 | gCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCCGGCGGTTATCAGCGACGACGGCCACACGGCGTGGAgc‑‑g > 2:204652/1‑149 (MQ=14) ttGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCGAGACAGGTGGAGCCGAAATACACACCGGCGCGAAAATCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CGGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGcgc‑‑ggg < 2:360906/149‑3 (MQ=11) ttGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGc‑‑gcg < 1:247063/149‑1 (MQ=255) tggcgcAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGcgc‑‑ggg < 2:90830/147‑3 (MQ=255) tGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGG‑‑GCgg > 1:395992/1‑149 (MQ=255) cgcAGGGCGGGCGGACGGTGGGGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCCTATCAGTATAGACGGCAATACGGCGTGGAGC‑‑GCGGaa < 2:325256/149‑1 (MQ=17) aGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGC‑‑GGGGAgtat > 1:688512/1‑149 (MQ=255) ggcgggcggACGGTGGAGCAACCGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATatga < 2:395992/148‑1 (MQ=255) gCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGC‑‑GGGGAGTatgat < 1:109210/149‑1 (MQ=255) tGACGGTGGGGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATgg < 2:245612/149‑1 (MQ=255) gACGGTGGCGCAACTGGCCAGACAGGTGGAGCCGGAATACCCACCGGCGCGAAAAGCTCATCTTTATCTC‑TGCGACCACCGGGGT‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGC‑‑GGGGAGTATGATGAATggg < 1:162991/149‑1 (MQ=11) aCGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGC‑‑GGGGAGTATGATGAATgggg > 2:644825/1‑149 (MQ=255) aCGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATgggg > 1:321590/1‑149 (MQ=255) aCGGGGGAGCCACTGGCCAGACAGGGGGAGGCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCGC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGTAGGCGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATgggg < 2:432612/149‑1 (MQ=17) cGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATggggg > 1:385533/1‑148 (MQ=255) ggTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATTGGGCa > 1:204579/1‑149 (MQ=255) tGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAAc < 1:450918/149‑1 (MQ=255) gAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCa > 1:259537/1‑149 (MQ=255) gCCAGAGAGGTGGAGCCGGAATACACACCGGCGCGAAATGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATga < 2:23921/149‑1 (MQ=255) gCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGGGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGC‑‑GGGGAGTATGATGAATGGGGCAACCAGCTTAATga > 1:601389/1‑149 (MQ=11) gCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGC‑‑GGGGAGTATGATGAATGGGGCAACCAGCTTAATga > 1:550118/1‑149 (MQ=255) gCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGAAGGCAATACGGCGTGGCGG‑‑GGGGAGGAGAAGGAATGGGGCAGTCAGGTTAAGga > 2:480002/1‑149 (MQ=11) ccAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTGTATCAC‑TGCAACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGC‑‑GGGGAGTATGATGAATGGGGCAACCAGCTTAATgag < 2:75501/149‑1 (MQ=11) aGACATGTGGAGCCGGAATGCACGCCGGCGCGAAAAGCTCATCTTTATGAC‑CGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATgagga < 2:89930/149‑1 (MQ=17) aGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGC‑‑GGGGAGTATGATGAATGGGGCAACCAGCTTAATgagga > 2:297954/1‑149 (MQ=255) aGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATgagga < 1:584273/149‑1 (MQ=255) aGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGGAGATGTCGATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAAc > 1:336069/1‑149 (MQ=255) aGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAAc > 2:36106/1‑149 (MQ=255) aGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACCGCGTGGCGC‑‑GGGGAGGCTGATGCAAGGGGCCACCACGTTAACGCGGGGAAc > 2:574929/1‑149 (MQ=11) gTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCATCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGC‑‑GGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAAccc > 1:453216/1‑149 (MQ=255) gTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTA‑CACAAGCCGCTACCGGGGAGCGGGCG‑GAGCGGGTATCAGCGAAGACGGCAATACGGCGTGGCGC‑‑GGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAAccc > 1:163711/1‑149 (MQ=0) tGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCCATACGGCGAGGCGC‑‑GGGGAGTATGATGGCTCAGGCACCCAGCTTAAGGAGGAGACCCCg > 2:111490/1‑149 (MQ=11) tGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGC‑‑GGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCg < 1:490999/149‑1 (MQ=255) gCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGC‑‑GGGGAGTATGATGAAt > 1:648700/1‑116 (MQ=11) gCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGC‑‑GGGGAGTATGATGAAt < 2:648700/116‑1 (MQ=11) gAATCCACACCGGCGCGACAAGCCCAGCTTCATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCAtgt < 1:301881/149‑1 (MQ=17) aaTACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGC‑‑GGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACTCtcatcacctg < 2:430523/149‑5 (MQ=1) aaTACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGCGC‑‑GGGGAGTATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGcatcacctg < 2:548908/149‑5 (MQ=11) acacCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATggg > 2:89883/1‑109 (MQ=255) acacCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATggg < 1:89883/109‑1 (MQ=255) acacCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCa > 1:400575/1‑149 (MQ=255) acacCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCa > 1:118937/1‑149 (MQ=255) cgcgAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTAc < 2:302987/149‑1 (MQ=255) gcgAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCGCCGGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTAcc < 1:539049/149‑1 (MQ=255) aatgCTCATCTCTATCCC‑TGTGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCt < 1:204652/146‑1 (MQ=255) cTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCa < 2:268167/149‑1 (MQ=255) tCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAg > 1:546470/1‑149 (MQ=255) tCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAg > 1:546242/1‑149 (MQ=255) tATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGgcagca < 1:610197/149‑1 (MQ=255) c‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCatg > 2:679253/1‑149 (MQ=255) c‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCatg > 1:395085/1‑149 (MQ=255) ccaccGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAAt < 2:349722/88‑1 (MQ=255) ccaccGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAAt > 1:349722/1‑88 (MQ=255) ccGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAAt > 2:455012/1‑149 (MQ=255) cGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATc > 1:518752/1‑149 (MQ=255) gA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTGTGCCAGGGCAGCAGCATGATGAGGAATCAggg < 2:64402/149‑1 (MQ=255) gcGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGGGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAGGGCTGTa < 1:554630/148‑1 (MQ=255) ccGGTGGGGCTTATCAGCGAAGGCGGCAATACGGGGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAGGGCTGTa < 2:125189/149‑1 (MQ=255) ccGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGCGAGCGGAAGA‑G‑TGTAGTGTGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCATCAGCATAATGAGGAATGAGGGCTGTa > 2:634376/1‑149 (MQ=17) ccGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGGACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATACGGGCTGtg > 1:328591/1‑148 (MQ=255) ccGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAGGGCTGTa < 2:400575/149‑1 (MQ=255) ccgcTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAGGGCTGTACTATaa < 2:61898/148‑1 (MQ=255) cgcTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAGGGCTGTACTATAAc < 1:36106/149‑1 (MQ=255) tATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATAAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAGGGCTGTACTATTACCGtt > 2:62654/1‑148 (MQ=255) tCAACGAAGTCGGCAATCAGGCGTGGAGC‑‑GCTGAACATTATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAGGGCTGTACTATAACCGTCAc < 1:238657/149‑1 (MQ=17) gAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAGGGCTGTACTATAACCGTCACCGGta > 2:436933/1‑149 (MQ=255) aCGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAAACCGCATTATGTGTAGCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAGGCGTGTACTATAACCTTCACCGGgactac > 1:321779/1‑149 (MQ=17) ggCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCAtgatga < 2:8962/110‑1 (MQ=255) ggCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCAtgatga > 1:8962/1‑110 (MQ=255) caCGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAGGGCTGTACTATAACCGTCACCGGTACTACGATCCGt < 2:204579/148‑1 (MQ=255) | GCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGCTCATCTTTATCAC‑TGCGACCACCGGGGA‑CTGCCGCTGGCGCTTATCAGCGAAGACGGCAATACGGCGTGGAGC‑‑GCGGAATATGATGAATGGGGCAACCAGCTTAATGAGGAGAACCCGCATCATGTGTATCAGCCGTACCGTCTGCCAGGGCAGCAGCATGATGAGGAATCAGGGCTGTACTATAACCGTCACCGGTACTACGATCCGT > NC_000913_3_pae_pgi/526647‑526930 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |