New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	2505261 =	31 (1.320)	4 (0.180)	3/274	3.1	12.4%	coding (287/1038 nt)	ypdE	aminopeptidase
	?	NC_000913_3_pae_pgi	2505282 =	27 (1.200)					coding (266/1038 nt)	ypdE	aminopeptidase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGCATCACTTCGTCATAGGAGCGCGCACCAATGTCCACGCGCATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATGCGCACAGATCATCACCTTCGGACCTGTCGATTCATTCAGGCGGATCAGCACCGATCCCAGACCA  >  NC_000913_3_pae_pgi/2505137‑2505428                                                                                                                                                  |                                                                                                                                                   cTGCATCACTTCGTCATAGGAGCGCGCACCAATGTCCACGCGCATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGc                                                                                                                                                 <  2:73573/149‑1 (MQ=255) cTGCATCACTTCGTCATAGGAGCGCGCACCAATGTCCACGCGCATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGc                                                                                                                                                 <  1:333083/149‑1 (MQ=255)         cTTCGTCATAGGAGCGCGCACCAATGTCCACGCGCATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTg                                                                                                                                         >  2:257740/1‑149 (MQ=255)             gTCATAGGAGCGCGCACCAATGTCCACGCGCATGGCGCCGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCaa                                                                                                                                     <  1:333967/149‑1 (MQ=255)               cATAGGAGCGCGCACCAATGTCCCCGCGCATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCCGCTGGCGGGCAGCCATACGTACGTTGCCAAcc                                                                                                                                   >  2:119266/1‑149 (MQ=255)                         cgcACCAATGTCCACGCGCATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACAt                                                                                                                         <  1:257740/149‑1 (MQ=255)                           cACCAATGTCCACGCGCATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGGGGGAAGCCATGCGTACGTTGCCAGCCGGCGGACCATCa                                                                                                                       >  1:227226/1‑149 (MQ=255)                                 tGTCCACGCGCATGGCGCTGACGTCATTCCCCGGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGcc                                                                                                                 <  2:276843/149‑1 (MQ=255)                                          gcATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCgg                                                                                                        <  2:353468/149‑1 (MQ=255)                                          gcAGGGCGCTGACGGCCTTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACTTGGTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCgg                                                                                                        <  1:97304/149‑1 (MQ=255)                                             tGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACACCAATCGCCCCTTCGCGGgag                                                                                                     >  1:339170/1‑149 (MQ=255)                                                       gTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCa                                                                                           >  1:241932/1‑149 (MQ=255)                                                               gcTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCCGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAAt                                                                                   <  2:113617/148‑1 (MQ=255)                                                                   ccGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCa                                                                               <  2:142908/149‑1 (MQ=255)                                                                           cGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTcc                                                                       <  1:299223/149‑1 (MQ=255)                                                                                 gCAGGCCTGGAATTTTGCACTCGTCACGGGTGTTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATgc                                                                 <  2:243194/149‑1 (MQ=255)                                                                                  cAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATgcg                                                                >  1:263684/1‑149 (MQ=255)                                                                                         ggAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACCTCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATGCGCACAGat                                                         <  1:368799/149‑1 (MQ=255)                                                                                             ttttGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATGCGCACAGatcatc                                                     <  1:192580/149‑1 (MQ=255)                                                                                                  cACTCTGCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCATCATAAAGCCCACTTCGTCCATATGCGCACAGATCATCACCtt                                                <  1:223676/149‑1 (MQ=255)                                                                                                                    aTGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATGCGCACAGATCATCACCTTCGGACCTGTCGattcatt                              >  2:319410/1‑149 (MQ=255)                                                                                                                         cACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATGCGCACAGATCATCACCTTCGGACCTGTCGATTCATTCAGGc                         >  1:240293/1‑149 (MQ=255)                                                                                                                            cGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATGCGCACAGATCATCACCTTCGGACCTGTCGATTCATTCAGGCGGa                      <  1:377241/149‑1 (MQ=255)                                                                                                                             ggCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAGTCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATGCGCACAGATCATCACCTTCGGACCTGTCGATTCATTCAGGCGGAt                     <  1:285131/149‑1 (MQ=255)                                                                                                                                 gCAGCTGGGGGGCGGCCAGGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATGCGCACAGATCATCACCTTCGGACCTGTCGATTCATTCAGGCGGATCAGc                 <  2:35766/149‑1 (MQ=255)                                                                                                                                   cgCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGCGATATGCTTCGCACCATAAATCCCACTTCGTCCATATTCGCACAGATCATCACCTTCTGACCTGTCGATTCTTTCAGGCGGACCCGCAc               >  2:142374/2‑149 (MQ=255)                                                                                                                                    gCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATGCGCACAGATCATCACCTTCGGACCTGTCGATTCATTCAGGCGGATCAGCAcc              >  1:385238/1‑149 (MQ=255)                                                                                                                                                ccATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATGCGCACAGATCATCACCTTCGGACCTGTCGATTCATTCAGGCGGATCAGCACCGATCCCAGACCa  >  1:356601/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                   CTGCATCACTTCGTCATAGGAGCGCGCACCAATGTCCACGCGCATGGCGCTGACGTCATTCCCCTGCCGGTCGCCGTCAAGCAGGCCTGGAATTTTGCACTCTTCACGGGTGGTGATGCGCACCGGCTGCAGCTGGCGGGCAGCCATGCGTACGTTGCCAACCGGCAGCACATCAATCGCCCCTTCGCGGGAGATGCTGCGCACCATAAATCCCACTTCGTCCATATGCGCACAGATCATCACCTTCGGACCTGTCGATTCATTCAGGCGGATCAGCACCGATCCCAGACCA  >  NC_000913_3_pae_pgi/2505137‑2505428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.