| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 4,295,320 | 0 | C | T | 24.3% | 227.4 / 82.2 | 148 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base C (55/57); new base T (19/17); total (74/74) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.48e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 150 total aligned reads displayed.
GTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGC > NC_000913_3_pae_pgi/4295172‑4295466 | gTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAAc > 2:264115/1‑149 (MQ=32) ggATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGCTTTAGCGTGATTTTGTAGGTCGGATACGGCGTT‑TACGCCGCAGCCGACATCCATGcc > 1:736603/1‑149 (MQ=11) aTAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATCGCCTGATTTCGCGTGAGTTTGTAGGTCGGATAAGGCGGT‑TACGCCGGATCCGGCCTCAACGCCTg > 1:268565/1‑149 (MQ=11) tAAGGTGTTTATGCCGCGTCCGATATCAACGCCTGATGCGACGATTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAATGCCTGa < 2:1154805/149‑1 (MQ=11) tAAGGCGTTTACGCCCCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAATGCCTGa < 1:988246/149‑1 (MQ=12) ggCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAGCGCGTCTTCTCAGGGCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTGGGATAAGGGGTT‑TACGCCGCAGCCGACAGCAACGACTgcagg > 1:205182/1‑145 (MQ=11) ggCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATACGGCGTT‑TACGCCGCATCCGACATCAATGCCtcttcc > 2:1003215/1‑144 (MQ=12) ggCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAATGCCTGATGc < 2:908935/149‑1 (MQ=17) ggCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGcc < 2:1204866/143‑1 (MQ=32) ggCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGcc > 1:1204866/1‑143 (MQ=32) gCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACGGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCTCACATCAATGCCTGTTGCg > 1:184392/1‑149 (MQ=11) gCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAATGCCTGATGCg > 2:340763/1‑149 (MQ=17) cGTTTATGCCGCATCCGACATCAACGCCTGATGCGATGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGGGTT‑TACTCCGCATCCGACATCAACGCCTGATGCGa < 1:1048741/149‑1 (MQ=12) tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAATGCCTGATGCGACGCt < 1:107589/149‑1 (MQ=17) gCCGCATCCGACATCAACGCCGGATGCGACGCTTAACGCGTCTTATCAGGCCCACGCCAGACAGCGCAATAGCCTGATTTAGCGCGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGc < 1:47246/149‑1 (MQ=255) ccGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAAACAGTGAACAATCATGAGTTAGCTTGATTTTGTAGGTCGGCTAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGcc > 2:1280800/1‑149 (MQ=11) cGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAATGCCTGATGCGACg < 1:952045/142‑1 (MQ=17) cGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAATGCCTGATGCGACg > 2:952045/1‑142 (MQ=17) aTCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCACTAGCCTGATTTAGCGTGATTTTGTAGGTCGGAAAAGGCGTT‑TACGCCGCATCCGACACCAACGCCTGATGCGACGCTTGCCTCGt > 2:393937/1‑149 (MQ=255) cGACATCAACGCCTGATGCGACGCTTAACGCGTATTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCtt < 1:682538/149‑1 (MQ=255) gACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTa > 1:865506/1‑149 (MQ=38) cATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATc < 2:865506/149‑1 (MQ=38) actCAACGGCTGATGGGACGCGTAACGCGTGTTATCAGGCCTACGACAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATCAGGCGTT‑TACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATc < 2:555832/147‑1 (MQ=11) aTCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAATGCCTGATGCGACGCTAGCAGCCTCCTATCa > 1:294866/1‑149 (MQ=11) tCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGCTTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACTCCTGATGCGACGCTTGCCGCGTCTTATCAg > 1:555832/1‑149 (MQ=255) tCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAATGCCTCATGCGACGCTTCCCGCGTCTTATCAg > 2:742870/1‑149 (MQ=255) tCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATccg > 1:599609/1‑147 (MQ=37) aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGG‑CAAGTCGTTGTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCCGGc > 1:329509/1‑149 (MQ=11) gCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa > 1:1284397/1‑149 (MQ=25) gCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa > 1:952800/1‑149 (MQ=21) ctggATGCGTCTCTTGACGCGTCTTAGCAGGCCTACGCAAGACAGCGCAATAGCCTGATTTACGGTGATTTGGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc < 1:686984/146‑1 (MQ=14) ccTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTat < 1:68657/149‑2 (MQ=18) ccTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc > 2:448887/1‑149 (MQ=37) ccTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATGTGGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCACTGCCTGATGCGCCGCTTGACGCGTCTTATCCGGCCtgt > 2:867321/1‑147 (MQ=11) cTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTc < 2:223326/135‑1 (MQ=18) tggtGCGACGCTTAACGTGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc < 2:626192/146‑1 (MQ=255) tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc > 2:1185191/1‑149 (MQ=39) tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGAGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATACGGCCTACGc > 2:1226150/1‑149 (MQ=255) ggtatgCTTGACGCGTTTTATCAGGCGTATGCCAGGCAGCGCAATGGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGGATCCTACATCAACGCCTGATGCGACGCTTGTCGCGTTTTATAAGACCTACGCCAGa < 2:699675/144‑1 (MQ=11) aCGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACgccagc‑cat > 2:1196584/1‑148 (MQ=255) aCGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAg > 1:234634/1‑149 (MQ=38) cGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTat < 2:914774/139‑2 (MQ=18) ttAACGCGTCTTATCAGGCCTACGCCAGACAGTGCAATAGCCAGAATTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGATTGCCGCGTCTTATCAGGCCTACGCCAGC‑CAgcgcg > 1:1116778/1‑148 (MQ=11) gcgTCTAATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa < 1:28538/130‑1 (MQ=255) gTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAATGCCTGAt > 2:305849/1‑99 (MQ=21) cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 1:177830/123‑1 (MQ=25) aTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATg < 2:1402502/95‑1 (MQ=34) aTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATg > 1:1402502/1‑95 (MQ=34) aGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCa < 1:303441/114‑1 (MQ=255) aGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCa > 2:303441/1‑114 (MQ=40) ggCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTc < 1:905213/107‑1 (MQ=255) gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGCTAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGC‑CAGCGGAATAACCTGGTTTAGCGt > 1:767718/1‑149 (MQ=11) gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAgg < 2:1024360/114‑1 (MQ=255) gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGC‑CAGCGCAATATCCTGAtataactt > 2:886011/1‑145 (MQ=255) cgaCGCGAGAGAGGGAAATAGTCTAATTGAGCGTGATTTTGTAGGGCGGATAAGGGGTT‑GACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGa < 2:105071/147‑1 (MQ=11) cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGATTTAAGCGGTCGACCCCAGC‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGt > 1:466120/1‑149 (MQ=11) aggcAGCGCTATGGGCGGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTa < 2:578438/146‑1 (MQ=11) aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTa > 2:821675/1‑149 (MQ=39) aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCAGACATCAATGCCTGATGCGACGCTTGc < 1:1031566/91‑1 (MQ=255) aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCAGACATCAATGCCTGATGCGACGCTTGc > 2:1031566/1‑91 (MQ=255) gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAg < 2:93550/136‑1 (MQ=38) aGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTc < 1:1002661/149‑1 (MQ=39) aGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTc > 1:966165/1‑149 (MQ=39) aGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTc < 2:234634/149‑1 (MQ=38) aaTAGCCTGATTTAGCGTGATTTT‑TAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACCCCAGC‑CAGCGGAATAGCTTGATTTAGCGTGATTTTCTATGTCGGacag > 1:1284898/1‑146 (MQ=11) aTAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCtt > 1:489834/1‑79 (MQ=35) tAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGGCTTACCA‑CCGTCTGCCTTATCAGCGCAATAGCCTGATTTAGCGTGATTATGTGCGTCGGATCAg > 1:269249/1‑149 (MQ=11) ccTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCg > 2:1204640/1‑149 (MQ=37) tGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAATGCCTGATGCGACGCTTg > 2:946181/1‑74 (MQ=255) tGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAATGCCTGATGCGACGCTTg < 1:946181/74‑1 (MQ=255) gttAGCTGGATTGTGATGGCCGGATAAGACTTT‑TACTCCGCAACCGACAGCAACGCCTGATGCGACGCTTTCCGCGGCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAt < 2:981977/148‑1 (MQ=11) ttAGCGTGATTGTGTGGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATg < 2:686478/149‑1 (MQ=255) ttAGCGTGAGTTGGGATGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATg < 2:205182/149‑1 (MQ=255) tAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGc > 1:984774/1‑149 (MQ=39) tAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGc > 1:182644/1‑149 (MQ=37) aGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCtt < 1:801329/77‑1 (MQ=255) aGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCtt > 2:801329/1‑77 (MQ=255) aGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGcc < 1:320403/149‑1 (MQ=39) gTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATg > 1:732944/1‑56 (MQ=38) ttttGTAGGTCGGATAAGGCGTT‑TACGCCGCATCGGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATGTAGCGTGATTTTGTAGGTCGGGTAAGAGGTTCATGCCGCATCCg > 2:1115978/1‑149 (MQ=14) ttGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGAc < 1:1204640/149‑1 (MQ=38) gTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCa > 2:180440/1‑81 (MQ=255) gTCGGTTAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAAc < 1:27156/149‑1 (MQ=37) gATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGc > 2:766109/1‑97 (MQ=255) gATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCt > 2:1111361/1‑149 (MQ=39) aTAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATa > 1:339201/1‑84 (MQ=255) aTAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATa < 2:339201/84‑1 (MQ=255) tAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGa > 2:869296/1‑149 (MQ=38) gggatt‑tACGCCGCACCAGATGTGAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGc < 2:1260210/145‑1 (MQ=11) cGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGa < 1:869296/149‑1 (MQ=38) tt‑tACGTCGCCTCCGAGATGAACGCCGGAGGCGACGCTTGCCGCGTCTTATCAGGTTTACGCCAGA‑AAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGTTACGACAGTTCTGCCGCATCCGACATCAACGCCTGATGCGACg < 2:599609/149‑1 (MQ=11) tACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCGTCCGACATCAACGCCTGATGCGACGCt > 1:309758/1‑149 (MQ=37) gccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCGGACAGCAACGCCTGATGCGACGCTTaa > 2:404603/1‑149 (MQ=25) gccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTaa > 1:1136278/1‑149 (MQ=34) gACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGC‑CAGCGCAATATCCTGCTTTATCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGCTGCAACGCTTAATGCGTCTTa > 2:433885/1‑149 (MQ=11) cATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATc < 1:826184/149‑1 (MQ=34) aTCAACGCCTGCCGCGACGCTTGCCGCGTCTTATCCGCCCTACGCCAGA‑CAGCGCAATAGCCTAATTTCGCGTGACTTTGTAAATCGGATAAGGCGTTCAAGCCGCATCCGACATCAACGCCTGATGCGATGCTTGACGCGTCTTAACa > 2:116839/1‑149 (MQ=11) aTCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAg < 2:1344367/93‑1 (MQ=37) aTCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACg < 1:67169/132‑1 (MQ=34) aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGc < 1:448887/149‑1 (MQ=32) | GTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑TACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGA‑CAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGC > NC_000913_3_pae_pgi/4295172‑4295466 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |