New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi 72169 =NA (NA)8 (0.120) 8/264 7.4 NA noncoding (34/85 nt) REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913_3_pae_pgi 3296999 = NA (NA)noncoding (1/84 nt) REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 105 total aligned reads displayed.

AGTGACCACCGAAAACGGTGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGACACTGCCACC  >  NC_000913_3_pae_pgi/3296852‑3297146
                                                                                                                                                   |                                                                                                                                                   
aGTGACCACCGAAAACGGTGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGGGAAGCGGGTAACTACGGCGGTTACGTTTATTAAATAGAGGAACCTTGTAAAGc                                                                                                                                                    >  1:178076/1‑149 (MQ=255)
 gTGGCCAACGAAAACGGGGAAGTGCTCCTGGTGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATGGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGcc                                                                                                                                                   <  2:835671/149‑1 (MQ=255)
 gTGACCACCGAAAACGGTGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGcc                                                                                                                                                   <  2:943770/149‑1 (MQ=255)
  tGACCACCGAAAACGGTGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCt                                                                                                                                                  >  1:608720/1‑149 (MQ=255)
   gACCACCGAAAACGGTGAAGTGTTCCGGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTg                                                                                                                                                 <  2:1120894/149‑1 (MQ=255)
     ccaccGAAAACGGTGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGAt                                                                                                                                               >  1:778807/1‑149 (MQ=255)
     ccaccGAAAACGGTGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAACGAAAGCGGCGGCAGAGCTTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTAAGGCGTTTACGTTTATTAAATATAAGCCCCTTGTAATGCCTGAt                                                                                                                                               >  2:277712/1‑149 (MQ=255)
      caccGAAAACGGTGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGAGATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAAAAGCAGCCCCTTGTAATGCctgctg                                                                                                                                              >  2:730024/1‑149 (MQ=255)
       accGAAAACGGTGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGc                                                                                                                                             <  1:738278/149‑1 (MQ=255)
           aaaaCGGTGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACg                                                                                                                                         >  1:436563/1‑149 (MQ=255)
                gtggAAGTGTTCTTGATGGGGCGGGTGACTGAACGTGAAGCGAAAGCGGGGGCAGATATTGGCAGCCGGGTGAGCGGAGTGAAGCGGGTTACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGc                                                                                                                                    <  2:69666/146‑1 (MQ=255)
                     aGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGt                                                                                                                               <  1:790727/149‑1 (MQ=255)
                         ttCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTa                                                                                                                           >  2:707746/1‑149 (MQ=255)
                          tCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTAt                                                                                                                          <  1:345531/149‑1 (MQ=255)
                          tCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTAt                                                                                                                          <  2:898781/149‑1 (MQ=255)
                             tGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGAAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                                                                       <  1:641129/149‑1 (MQ=255)
                              gATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAgg                                                                                                                      <  1:51055/149‑1 (MQ=255)
                                  gggCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa                                                                                                                  <  2:123959/149‑1 (MQ=255)
                                   ggCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTCATGCCTGATGCGACGCTTGGCCGGTCTTATCAGGCCTAc                                                                                                                 >  2:365093/1‑149 (MQ=255)
                                   ggCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGAGGCGTGACACGGGTAACTACGGCTTTAACGATGCGACAAGATTAGCCACTCTTATTTCCTTATGCGACGCTTGCCGCGTCTTATCAGTCCTAc                                                                                                                 >  2:1161774/1‑149 (MQ=255)
                                     cTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACaa                                                                                                               <  2:778807/149‑1 (MQ=255)
                                        gTGACTGAACGTGAAGCGAACGCGGCGGCAGATAGTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTACCTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGa                                                                                                            <  1:1161774/149‑1 (MQ=255)
                                        gTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTCCGGCGTTTACGTGTATTAAATAACAGCAACGCCTGGTCCCAGATCCGCCACCCGCCGCGTCTTATCAGGCCCACAAcaa                                                                                                            >  2:804079/1‑147 (MQ=255)
                                        gTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGa                                                                                                            <  2:542367/149‑1 (MQ=255)
                                             tGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa                                                                                                                  <  1:750642/138‑1 (MQ=255)
                                             tGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa                                                                                                                  >  2:750642/1‑138 (MQ=255)
                                             tGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACaa                                                                                                       >  2:406676/1‑149 (MQ=255)
                                             tGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCAATTCGCGTACTGGATGCACAAAATGCAGGGTCTTATCAGGCCTACAACGATACaa                                                                                                       >  1:1181392/1‑149 (MQ=255)
                                               aaCGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGcc                                                                                                                                                   >  2:1132464/1‑103 (MQ=255)
                                               aaCGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGcc                                                                                                                                                   <  1:1132464/103‑1 (MQ=255)
                                               aaCGGGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAAGGCCTGATGCGACGCTTTCCGCGTCTTATCAGGCCTACAACGATACAAAc                                                                                                     <  1:39220/149‑1 (MQ=255)
                                                aCGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCcgc                                                                                                                                 <  2:40451/120‑1 (MQ=255)
                                                aCGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCcgc                                                                                                                                 >  1:40451/1‑120 (MQ=255)
                                                  gTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGCAACTAGGGTATTACCCTTTATTAAATAACAGCATCATGTAATACCCAAAGCCACTCTGGCCTACGCCTATGAAGCCTCCAACAATACAAACCGt                                                                                                  >  2:106375/1‑149 (MQ=255)
                                                   tGAAGCGAACGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTa                                                                                                 <  1:354519/149‑1 (MQ=255)
                                                    ggagagAAAGGCGCGGCAGATATTGCCAGGCGGGGGAGCGGCTTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTTTAATGCCTGATGCGACGCTTTCCGCGTTTTATCAGGCCTACAACGATACAAACCGTAg                                                                                                <  2:193736/144‑1 (MQ=255)
                                                    gAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAg                                                                                                <  2:504926/149‑1 (MQ=255)
                                                    gAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCACGCCTACAACGATACAAACCGTAg                                                                                                >  2:1181328/1‑149 (MQ=255)
                                                       gCGAAAGCGGCGGCAGATATTGCCAGCCGAGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGCTc                                                                                             >  2:860407/1‑149 (MQ=255)
                                                        cGAAAGCGGGGGTAGATTGTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCGACAACGATAACAACCGTAGTTCa                                                                                            <  2:1114615/149‑1 (MQ=38)
                                                                gcggcAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGc                                                                                    <  2:676038/149‑1 (MQ=255)
                                                                   gcAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGtt                                                                                 >  2:298426/1‑149 (MQ=255)
                                                                        tatTGCCAGCCGGGTGGGCGGCGTGAAGCGGGTAACTACGGCGTTGACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCCACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgc                                                                            <  2:340720/149‑1 (MQ=255)
                                                                        tagtGCCAGCCGGGTGCGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgc                                                                            <  2:847443/146‑1 (MQ=255)
                                                                         atTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTc                                                                                                                              >  1:131255/1‑98 (MQ=255)
                                                                         atTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTc                                                                                                                              <  2:131255/98‑1 (MQ=255)
                                                                         atTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgcc                                                                           >  2:714668/1‑149 (MQ=255)
                                                                          ttGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAACCCGTAGGTCAGATAAGGCGTTTAcacca                                                                          >  1:772747/1‑148 (MQ=255)
                                                                          ttGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgccg                                                                          >  2:271501/1‑149 (MQ=255)
                                                                          tggCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgccg                                                                          <  2:1028287/147‑1 (MQ=255)
                                                                                 ccGGGTGAGCGGCGTGAAGCGGGTATCTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGa                                                                   <  1:918445/149‑1 (MQ=255)
                                                                                 ccGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGa                                                                   <  1:824248/149‑1 (MQ=255)
                                                                                    ggTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACAt                                                                >  1:935174/1‑149 (MQ=255)
                                                                                         gcggcgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGtttt                                                           <  2:143716/149‑1 (MQ=255)
                                                                                          cggcgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGCTTACACCGCATCCGACCTGtttcc                                                          >  2:786619/1‑147 (MQ=255)
                                                                                           ggcgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCTTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTcc                                                         <  2:166550/149‑1 (MQ=255)
                                                                                              gTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCCCATCCGCCATGTTTTCCCTc                                                      >  2:115205/1‑149 (MQ=255)
                                                                                              gTGAAGCGGCTAACTACGGCGTTTACGGTGATTAAATCGCAGCCCCTTGTAATGCCTGATGAGACGCTTGCAGCGTCTTATAAGGCCTACAACGATACAAACCGCAGGTCAGATAAGTCGTTTCCCCCGCCTCCCACACATTTACCCTc                                                      >  2:514404/1‑149 (MQ=255)
                                                                                                 aaGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCaaa                                                   <  1:298426/149‑1 (MQ=255)
                                                                                                 aaGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCaaa                                                   <  2:1027913/149‑1 (MQ=255)
                                                                                                 aaGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCaaa                                                   >  2:343855/1‑149 (MQ=255)
                                                                                                    cGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCa                                                <  1:343855/149‑1 (MQ=255)
                                                                                                      ggTAAATACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCGTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCATATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGa                                              <  1:106375/149‑1 (MQ=255)
                                                                                                       gTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCTTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATTAGaa                                             <  2:821192/149‑1 (MQ=255)
                                                                                                          aCTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGaacaa                                          <  2:935174/149‑1 (MQ=255)
                                                                                                            tACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCCCAAATCAGAacaaca                                        >  2:441981/1‑149 (MQ=255)
                                                                                                            tACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGCCGATTGCGCGGCATCCGACATGTTTTCCCTCAACTCCGaacaacg                                        >  2:975542/1‑148 (MQ=38)
                                                                                                              cGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAgc                                      <  1:714668/149‑1 (MQ=255)
                                                                                                              cGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATAACGCCTACAACGATACACACCGTAGGTCAGATAAGGCGTTTACCCCGCATCCAACATGTTTGCCCTCAAATCAGAACACCAgc                                      >  2:313463/1‑149 (MQ=37)
                                                                                                                   tttacttttaTTAAAAAGCAGCCCCTTGTAATGCCTGAGGCGACGCTTGCCGCGTCTTATCAGGCCTACAAGGATACAAACCGTAGGGCAGATAAGGTGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAg                                 <  2:200572/149‑1 (MQ=38)
                                                                                                                   tttacgtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAg                                 <  2:623051/149‑1 (MQ=255)
                                                                                                                   tttacgtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCGCAAATCAGAACAACAGCGCCAg                                 >  1:882987/1‑149 (MQ=255)
                                                                                                                    ttacgtttaTTAAATAGCAGCCCCTTGTAATGCCTGGTGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAGATCAGAAAAACAGCGCCAGc                                >  2:901705/1‑149 (MQ=255)
                                                                                                                     tacgtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATACGACATGTTTTCCCTCAAATCAGAACAACAGcgcccgcc                               >  1:114424/1‑149 (MQ=255)
                                                                                                                        gtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCcgc                                                                                                                                 >  2:727282/1‑48 (MQ=255)
                                                                                                                        gtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCcgc                                                                                                                                 <  1:727282/48‑1 (MQ=255)
                                                                                                                        gtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCCCATCCGACATGTTTTCCCTCAAATCAGAACACCATCCCCCGccccc                            >  2:286164/1‑147 (MQ=37)
                                                                                                                        gtatattaAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTCTCAGGCCTACAACGATAAAAACCGTAGATCAGATAAGGCAGTTACGCCACATACGACATGTCATCCCTCAAATCAGACCAACAGCGCCAcgccgc                            >  2:1037769/4‑149 (MQ=37)
                                                                                                                         tttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCCAATCAGAACAACAGCGCCAGCccgcc                           >  2:735193/1‑149 (MQ=255)
                                                                                                                         tttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCATACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTAACCTCCAATCCTCCCAACCGCGCAGGCccgcc                           >  1:24784/1‑149 (MQ=25)
                                                                                                                           tattaAATAGCAGCCCCTTGTACTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGa                         <  1:406676/149‑1 (MQ=255)
                                                                                                                           tattaAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGa                         <  1:846627/149‑1 (MQ=255)
                                                                                                                           tattaAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGa                         >  1:826012/1‑149 (MQ=255)
                                                                                                                             ttaAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCCTCCGACATGTGTTCCCTCAAATCCACAGAACGGCGCGCGACCGCCGaga                       >  2:121889/1‑147 (MQ=25)
                                                                                                                             ttaAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAAATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCCCCGACCCCCCGCCa                       >  2:1151369/1‑149 (MQ=37)
                                                                                                                              taAATAGCAGCCCCTTGTAACGCCTGATGCGACGCTGGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACaa                      <  1:1138581/149‑1 (MQ=255)
                                                                                                                               aaaTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAACCCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACACCAGCGCCAGCCCGCCGACaac                     >  1:304925/1‑148 (MQ=255)
                                                                                                                               aaaTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAAt                     <  1:707746/149‑1 (MQ=255)
                                                                                                                                aaTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATc                    >  1:574358/1‑149 (MQ=255)
                                                                                                                                aaTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGACAGCCCGACGACACTc                    >  2:188775/1‑149 (MQ=255)
                                                                                                                                  tAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATcac                  >  2:117233/1‑149 (MQ=255)
                                                                                                                                   agcagcCCCTTGTAATGCCTGATGCGCCGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCACAACAACAGCGCCACCGCGCCGACAATcaca                 >  1:692725/1‑149 (MQ=255)
                                                                                                                                     cagcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACAcc               <  1:1205492/149‑1 (MQ=255)
                                                                                                                                     cagcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACAcc               <  2:608720/149‑1 (MQ=255)
                                                                                                                                      agtcccTTGTAGTGCAGGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCa              <  2:354124/146‑1 (MQ=255)
                                                                                                                                      agcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCACTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCa              >  2:708092/1‑149 (MQ=255)
                                                                                                                                        ccccTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGTCCTACAACGATACTAACCGTAGGTCAGATAAGGCGTTTACGCCGCAGCCGACAGGTTTTTCCGCATATCAGAAGAAGAGTGCCAGCCCGTCGTCACTGacacatga            >  2:846310/1‑145 (MQ=21)
                                                                                                                                           cTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGACCTACAACGATACAAACCGTAGGTCAGATACGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCCCCACCCCGCCCAAACTCCCCCCATacac         >  2:519337/1‑149 (MQ=37)
                                                                                                                                                aaTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGGTAGCAACCCTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGACACTGcca    <  1:277712/149‑1 (MQ=255)
                                                                                                                                                  tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGACACTGccacc  >  1:304714/1‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
AGTGACCACCGAAAACGGTGAAGTGTTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGACACTGCCACC  >  NC_000913_3_pae_pgi/3296852‑3297146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.