New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	3676218 =	70 (1.200)	8 (0.140)	6/266	7.1	10.3%	noncoding (98/161 nt)	RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
	?	NC_000913_3_pae_pgi	4613521 =	NA (NA)					noncoding (5/388 nt)	REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences	REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGCCAGTAAC  >  NC_000913_3_pae_pgi/3676070‑3676365                                                                                                                                                     |                                                                                                                                                    tagctgctgACCCATGAGTCGTGATATCAGTCGTTGTGGTCAAGGTCGAGAGCCTGATGCTCTGCGCTTATCAGGCCGGAATTTCCATACTATTTATTGAGTTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCa                                                                                                                                                     <  2:114228/147‑1 (MQ=18) ctgctgctgACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa                                                                                                                                                     <  1:422698/149‑1 (MQ=255)          atccATGTGACGCGACATTAATCGTTTTATAAAGGTTGAAAAGCCTGATGCGCTACGCTTACCAGGTCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGTCGTTCACGCCGCACCCTGCATGAACAAAg                                                                                                                                            <  2:254196/147‑1 (MQ=21)          aCCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCGGGGTAAGGGGTTGTCGCCGGGTCGGGCGTGGACaagg                                                                                                                                            >  1:282209/1‑147 (MQ=37)            ccATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAAc                                                                                                                                                >  2:578167/1‑143 (MQ=255)            ccATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAAc                                                                                                                                                <  1:578167/143‑1 (MQ=255)            ccATCACACGCGAAATCAGCCCTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCCCCAAGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGca                                                                                                                                          <  1:212335/149‑1 (MQ=25)            acATGAGACGCGAAATCAGTCGTTGTAATAAGAGTGAAAATACTGATGGGCTAAGCTTATCAGGCGTGAAATTCGATAAAATATAATGAATTCGCAAAGATTTGTAGGCGGGATAAGGCGTTGAAGCCGCATCCGGCGTGAACAAAgat                                                                                                                                          >  2:56873/2‑147 (MQ=255)               tGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCacac                                                                                                                                       >  1:548714/1‑149 (MQ=255)                  gaCACGACATCAGTCGTTGTATTAAGAGTGAAAAGCCTGATGCGCGACGCATATCAAGCCTGAATTGCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGTCGTTCACGCCGCATCCGGCCTGCACGAAGCAAACttt                                                                                                                                    >  2:60567/1‑149 (MQ=25)                    cgcgACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGc                                                                                                                                  >  2:443871/1‑149 (MQ=255)                    cgcgACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGAGTTCTCGCCGCATCCGGCATGAACAAAGCACACTTTGc                                                                                                                                  <  1:908389/149‑1 (MQ=255)                     gcgACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCACGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGcc                                                                                                                                 >  1:694145/1‑149 (MQ=255)                     gcgACATCAGTCGTTGTAATAAGAGCGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGcc                                                                                                                                 >  2:72737/1‑149 (MQ=255)                        aCATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa                                                                                                                                                     <  2:211372/126‑1 (MQ=255)                        aCATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa                                                                                                                                                     >  1:211372/1‑126 (MQ=255)                          aTCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAAAAAAGCCCACTTTGCcaacaa                                                                                                                            >  1:537329/1‑149 (MQ=255)                               tCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTaa                                                                                                                       >  2:996602/1‑149 (MQ=255)                               tCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTaa                                                                                                                       <  1:342497/149‑1 (MQ=255)                                      aataaGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGtt                                                                                                                <  2:39115/149‑1 (MQ=255)                                        taaGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCcaa                                                                                                                               >  1:103142/1‑132 (MQ=255)                                        taaGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCcaa                                                                                                                               <  2:103142/132‑1 (MQ=255)                                           gagTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAAtc                                                                                                           >  1:56054/1‑148 (MQ=255)                                             gTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGc                                                                                                         >  2:1008037/1‑149 (MQ=255)                                              tGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTACCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGcc                                                                                                        >  2:946342/1‑149 (MQ=255)                                               gAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCg                                                                                                       <  1:101016/149‑1 (MQ=255)                                                     ccTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTc                                                                                                 <  2:2673/149‑1 (MQ=255)                                                      cTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTct                                                                                                <  1:646707/149‑2 (MQ=255)                                                      cTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCa                                                                                                <  1:983824/149‑1 (MQ=255)                                                       tGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAg                                                                                               >  2:140211/1‑149 (MQ=255)                                                          tGCGCTACGCTTATCAGGCCTGAATTTCAATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCGGGATGTCAAACa                                                                                            >  1:217411/1‑149 (MQ=255)                                                            ctcTACGCTTATCAGGTCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATc                                                                                          <  1:595377/147‑1 (MQ=255)                                                             tcTACGCTTATCAGGCCTGAATTTCCAAACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATcc                                                                                         <  1:365414/148‑1 (MQ=255)                                                             gcTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATcc                                                                                         <  1:710404/149‑1 (MQ=255)                                                                   cTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTACATCTGTTTAATTGCCGGATGTCAGACATCCGGCAAt                                                                                   >  2:60845/1‑149 (MQ=255)                                                                    tcaTCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAAtt                                                                                  >  2:941882/3‑149 (MQ=255)                                                                      aTCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCg                                                                                                       <  1:800866/126‑1 (MQ=255)                                                                      aTCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCg                                                                                                       >  2:800866/1‑126 (MQ=255)                                                                       tCAGGCCTGAATTTCAATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCTGACATCCGGCAATTaaa                                                                               <  1:795127/149‑3 (MQ=255)                                                                              tGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActt                                                                        >  1:686965/1‑149 (MQ=255)                                                                                aaTTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActtct                                                                      >  1:849810/1‑149 (MQ=255)                                                                                        tACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATATGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGc                                                              >  1:1010416/1‑149 (MQ=255)                                                                                                  tGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCg                                                    <  2:686965/149‑1 (MQ=255)                                                                                                   gacttCGAAAGGATTTGTAGGCGGGATAAGGCGTTCACGCCGCATGCGGCATGAACAAAGCACACTTTGCAAAAAATCTAACCCGGTTTAATTGCCGGATGTAAGACAGCCGGCAATTATCATCACTTCTGCATCTGCTACAAAATCGt                                                   <  2:873545/146‑1 (MQ=25)                                                                                                    aaTTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTc                                                  <  2:306581/149‑1 (MQ=255)                                                                                                     aTTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTcc                                                 <  1:941882/149‑1 (MQ=255)                                                                                                         gCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAAACATCCGGCAATTATCATCACTTCTTCATCTGCGCCAAAACCgccagcca                                             >  2:882767/1‑142 (MQ=37)                                                                                                          cAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCg                                                                                                       >  2:867716/1‑90 (MQ=255)                                                                                                          cAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCg                                                                                                       <  1:867716/90‑1 (MQ=255)                                                                                                          cAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGacac                                            <  1:443871/149‑1 (MQ=255)                                                                                                           caGGATTTGTAGGCCGTATAAGCCGTTCACGCCTCATCCGGCATGAACAAAGCACACTCTGCCAACAATCTACACCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt                                           <  1:86257/148‑1 (MQ=38)                                                                                                           aaGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt                                           >  2:3901/1‑149 (MQ=255)                                                                                                           aaGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt                                           >  1:149304/1‑149 (MQ=255)                                                                                                            aGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg                                          >  2:675190/1‑149 (MQ=255)                                                                                                            aGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAAAAGTCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg                                          >  2:675107/1‑149 (MQ=255)                                                                                                                tttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTa                                      <  1:996602/149‑1 (MQ=255)                                                                                                                   gTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGATCTTCAACGAGTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGcc                                   >  1:250850/1‑149 (MQ=37)                                                                                                                    tAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCACCTGAGACAAAATCGTACGACACTGATAAACCt                                  >  1:574522/1‑149 (MQ=38)                                                                                                                     aGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTc                                 <  2:682467/149‑1 (MQ=255)                                                                                                                         cGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACACAATCGTCCGACACTGATTAGCCTCCCCt                             >  1:319330/1‑149 (MQ=255)                                                                                                                           gATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTc                           <  2:149304/149‑1 (MQ=255)                                                                                                                            aTAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGCCCTCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCg                          <  1:60845/149‑1 (MQ=255)                                                                                                                                ggCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAg                      >  2:519305/1‑149 (MQ=255)                                                                                                                                ggCGTCCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAg                      <  2:51915/149‑1 (MQ=255)                                                                                                                                 ggggtCACGCCGCATCCGGCATGAACAAAGCACACCGTGCCAACAATTTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAgg                     <  2:231571/145‑1 (MQ=255)                                                                                                                                  cGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGt                    <  1:72737/149‑1 (MQ=255)                                                                                                                                         gccgcATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCa             <  1:328366/149‑1 (MQ=255)                                                                                                                                           cgcATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGt           >  2:791662/1‑149 (MQ=255)                                                                                                                                             cATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGc         <  1:140211/149‑1 (MQ=255)                                                                                                                                             cATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGc         <  1:519305/149‑1 (MQ=255)                                                                                                                                                 cGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTc                                                  <  2:182847/104‑1 (MQ=255)                                                                                                                                                 cGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTc                                                  >  1:182847/1‑104 (MQ=255)                                                                                                                                                 cGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGCCAGt     <  2:548714/149‑1 (MQ=255)                                                                                                                                                    cATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGCCAGTAAc  <  1:675190/149‑1 (MQ=255)                                                                                                                                                    cATGAACAAAGAACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAAACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGCCAGTAAc  <  1:675107/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGCCAGTAAC  >  NC_000913_3_pae_pgi/3676070‑3676365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.