New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	411135 =	74 (1.200)	9 (0.150)	7/266	6.6	11.4%	noncoding (58/191 nt)	REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913_3_pae_pgi	3676218 =	70 (1.200)					noncoding (98/161 nt)	RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCA  >  NC_000913_3_pae_pgi/410989‑411283                                                                                                                                                     |                                                                                                                                                     tAAGGCGAAGAACGGTTATTCCAGGGGCGTACGCGGGGCTGCGTGGTTATGGCCACAAGAGTATAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCCTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGcc                                                                                                                                                    <  2:976753/149‑1 (MQ=39)    ggCGAAGCACGGTGCTTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATGCGCGCATCCTGCCTGATGCGACGCTTGCCGCGTCTTATCCGG‑‑CCTACAAAAGATGCCCACACCGTGAGCCGGa                                                                                                                                                 >  2:189941/1‑149 (MQ=37)       gAAACACGGCGATTCCAGCGACGTACGCGGCGCTGGGTGGTTATGGCCACAAGAGGAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGGGCCACCCGCCTAGGCCGGATaa                                                                                                                                              >  2:1058909/1‑149 (MQ=37)        aaGCACGGTGATTCCAGCGTCGTACGCGGCGTTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCACGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAg                                                                                                                                             <  1:590031/149‑1 (MQ=255)        aaGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAg                                                                                                                                             <  1:563491/149‑1 (MQ=255)        aaGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAg                                                                                                                                             <  2:17875/149‑1 (MQ=255)          gCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGc                                                                                                                                           <  2:891443/149‑1 (MQ=255)                tGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCCTGCCTGATGCGACGCTTGCCGCG‑CTT‑CCAGGTTCCGGCAAAAGGTGCCAGAACCGCATGCCGGATAAAGCGTTCAc                                                                                                                                     >  1:247559/1‑149 (MQ=255)                   ttCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCAcgcc                                                                                                                                  >  1:647022/1‑149 (MQ=255)                      cAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCAGGATAAGGCGTTCCAGCCGCa                                                                                                                               >  1:141595/1‑149 (MQ=255)                               aCGCGGCGCTGGGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAt                                                                                                                      <  1:553535/149‑1 (MQ=255)                               aCGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAt                                                                                                                      <  1:553564/149‑1 (MQ=255)                                  cggcgCTGCGTGGTTATGGCATCAAGGTTAAAAAACGTAGGCAATTGGCCCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAg                                                                                                                   <  2:197057/149‑1 (MQ=25)                                                         aaGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCAGCCGGCAATAAGTGCTCCGCTGCCTGATGAGACGc                                                                                            >  2:414814/1‑149 (MQ=255)                                                             taaaaaaaCGAAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGc                                                                                        <  2:39626/147‑1 (MQ=255)                                                             gTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTTCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGc                                                                                        <  2:62077/149‑1 (MQ=255)                                                             gTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGc                                                                                        >  2:115800/1‑149 (MQ=255)                                                              tAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCAACGCTTGCCGCGTCTTAACAGG‑‑CCTACAAAAGGTACCAGAACCGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCACCGCTGCCGGACGCAAccaatgcc                                                                                       >  2:198825/1‑142 (MQ=21)                                                                  aaaCGTAGGCAATTGGGGCAGCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGt                                                                                   <  2:709055/149‑1 (MQ=255)                                                                       tAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCAcg                                                                                                                                    >  1:1027775/1‑95 (MQ=255)                                                                       tAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCAcg                                                                                                                                    <  2:1027775/95‑1 (MQ=255)                                                                       tAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTTCGATGCCTGATGCGACGCTTGCCGCGTCTTAt                                                                              <  1:433486/149‑1 (MQ=255)                                                                        aGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTTTc                                                                             >  2:588736/1‑149 (MQ=255)                                                                        aGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATc                                                                             <  2:647022/149‑1 (MQ=255)                                                                         ggCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCa                                                                            >  1:316434/1‑149 (MQ=255)                                                                          gCAATTGGCGCATCATGCCTGATGCGACGCTAGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                           <  1:135381/149‑1 (MQ=255)                                                                           cAATGGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAgg                                                                          <  2:268756/149‑1 (MQ=255)                                                                            aaTTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGCTAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                         >  2:64303/1‑149 (MQ=255)                                                                            aaTTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCCGGc                                                                         >  1:156835/1‑149 (MQ=255)                                                                            aaTTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                         >  1:610390/1‑149 (MQ=255)                                                                              ttGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGCCTTATCAGGCCt                                                                       >  2:707049/1‑149 (MQ=255)                                                                                 tcgcATCAGGCATGATGCGCCGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCCTATGAGGCCGGCa                                                                    >  2:668247/2‑149 (MQ=25)                                                                                 gcgcATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCa                                                                    >  1:193711/1‑149 (MQ=255)                                                                                   gcATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGGGTCTTATCAGGCCGGCaaa                                                                  >  1:415475/1‑149 (MQ=255)                                                                                    catcatGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCGGCGTCTTATCAGGCCTGCaaaa                                                                 >  1:134357/1‑149 (MQ=255)                                                                                      tcatGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAAtg                                                               >  1:544442/1‑149 (MQ=255)                                                                                      tcatGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAAtg                                                               <  2:289130/149‑1 (MQ=255)                                                                                      gcacgCCTGAAGCAACGCCTGCCGCACCTTAGCAGG‑‑CCTACAAAAGGTCCCAGAACCGCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAAtg                                                               <  2:520820/145‑1 (MQ=25)                                                                                         tGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCGTATCAGGCCTGCAAAATGTGc                                                            >  1:638129/1‑149 (MQ=255)                                                                                           ccTGATGCGACGCTCGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCa                                                          <  1:290413/149‑1 (MQ=255)                                                                                            cTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCCAAATGTGCCAg                                                         >  1:376870/1‑149 (MQ=255)                                                                                            cTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAg                                                         >  1:1018786/1‑149 (MQ=255)                                                                                              gATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCCGaa                                                       >  1:649717/1‑149 (MQ=255)                                                                                                  cGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATAAGGGCTGCAAAATGTGCCAGAACcgc                                                   >  1:470449/1‑149 (MQ=255)                                                                                                        ttGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAg                                                                                                                                             <  1:1033362/53‑1 (MQ=255)                                                                                                        ttGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAg                                                                                                                                             >  2:1033362/1‑53 (MQ=255)                                                                                                         tGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCACGCCTGCAAAATGTGCCAGAACCGCGTAgggg                                            >  1:178155/1‑148 (MQ=255)                                                                                                          gCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCg                                           <  1:837028/149‑1 (MQ=255)                                                                                                           ccGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCgg                                          >  1:970187/1‑149 (MQ=255)                                                                                                                tCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACTCCGCATCCGGCAATAAATGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAg                                     >  1:189760/1‑149 (MQ=255)                                                                                                                tCTTAGCAGG‑‑CCCACAAAAGGTGCCAGAACCGTAGGCCGGATATGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCCGAACCGCGTAGGGCGGATAAg                                     <  2:950656/149‑1 (MQ=255)                                                                                                                  ttATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGTATAAGGCGTTCACGCCGCATCCGGCAATACGTGCTCCGATGCCTGTTGCGACGCTTCCCGCGTCCTATCCGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGGTAAGGc                                   >  2:546485/1‑149 (MQ=37)                                                                                                                   taacAGG‑‑CCCACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCATGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCg                                  <  1:319315/146‑1 (MQ=255)                                                                                                                   tATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCg                                  <  1:751361/149‑1 (MQ=255)                                                                                                                    aTCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCGGAACCGCGTAGGGCGGATAAGGCGt                                 >  1:1037241/1‑149 (MQ=255)                                                                                                                     tcggg‑‑CCTAGAAAAGGAGCCAGAACTGTAGGGTGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGtt                                <  2:247559/146‑1 (MQ=37)                                                                                                                      cAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTc                               <  1:91881/149‑1 (MQ=255)                                                                                                                         g‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAAt                                                                >  1:879851/1‑113 (MQ=255)                                                                                                                         g‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAAt                                                                <  2:879851/113‑1 (MQ=255)                                                                                                                         g‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCAcg                            >  2:276766/1‑149 (MQ=255)                                                                                                                             cTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCAcgcc                          >  1:334879/1‑149 (MQ=255)                                                                                                                                  aaaGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCtt                                                                                <  2:470746/90‑1 (MQ=255)                                                                                                                                  aaaGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCtt                                                                                >  1:470746/1‑90 (MQ=255)                                                                                                                                   aaGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTAACAGGCCTGCAAAATGTGCCGAAACCGCGTAGGGCGGATAAGGCGTTCAcgccggcttc                    >  2:167222/1‑144 (MQ=255)                                                                                                                                      gTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGc                 <  2:571832/149‑1 (MQ=255)                                                                                                                                      gTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGc                 <  1:733015/149‑1 (MQ=255)                                                                                                                                          cAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGc                                                                                        >  1:1070926/1‑74 (MQ=255)                                                                                                                                          cAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGc                                                                                        <  2:1070926/74‑1 (MQ=255)                                                                                                                                          cAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATa             >  1:307041/1‑149 (MQ=255)                                                                                                                                           aGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATaa            <  1:668247/149‑1 (MQ=255)                                                                                                                                            gAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAg           <  2:1018786/149‑1 (MQ=255)                                                                                                                                             aaCCGGAGGTCGGAGAAGGCGGTCAGGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGACTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGt          <  2:972857/149‑1 (MQ=25)                                                                                                                                               ccGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTaa        >  1:976185/1‑149 (MQ=255)                                                                                                                                                cGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAAt       <  1:1049669/149‑1 (MQ=255)                                                                                                                                                 gTATGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATg      <  2:141595/149‑1 (MQ=255)                                                                                                                                                   acgCCGTATAAGGCGTTCACGCCGCAGCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAg    <  2:62663/147‑1 (MQ=255)                                                                                                                                                     gCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCGGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGCCAATAAGTCATGAGCa  >  2:221016/1‑149 (MQ=255)                                                                                                                                                     gCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAAGATGCCAGAACAGCGTAGGGCGGATACGCCGTACACGCCGCGTCCGGCCATAAGTAATGCGCa  >  2:220835/1‑149 (MQ=25)                                                                                                                                                     |                                                                                                                                                     TAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGG‑‑CCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCA  >  NC_000913_3_pae_pgi/410989‑411283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.