New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	3676218 =	70 (1.200)	8 (0.140)	6/266	7.1	10.3%	noncoding (98/161 nt)	RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
	?	NC_000913_3_pae_pgi	4553769 =	NA (NA)					noncoding (5/34 nt)	REP346 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP346 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAACTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACA  >  NC_000913_3_pae_pgi/4553623‑4553917                                                                                                                                                   |                                                                                                                                                     taactGATGACCCTACAGACTTACTGGTCAATCAAATTGATATTTGGTTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGcc                                                                                                                                                    <  1:967450/149‑1 (MQ=255) taactGATGACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTGTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGcc                                                                                                                                                    <  2:967131/149‑1 (MQ=255)     tGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTCGTAGGCCGGAt                                                                                                                                                >  1:589101/1‑149 (MQ=255)           tccTACAGACGTAATGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCg                                                                                                                                          <  2:1026283/148‑1 (MQ=255)                  gACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCAcgc                                                                                                                                   <  2:748696/149‑1 (MQ=255)                   acttacttGTCAATCAAACTGATTTTTGGTTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTATGCCGGATAAGGCGTTCAcgcc                                                                                                                                  <  2:165881/149‑1 (MQ=255)                     ttACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTGGTAGGCCGGATAAGGCGTTCAcgccgc                                                                                                                                >  1:227481/1‑149 (MQ=255)                     ttACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGGGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCAcgccgc                                                                                                                                >  2:554381/1‑149 (MQ=255)                         tGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGCCCGTAAAATTGCCCGTTGTAGGCCGGATAAAGCGTTCACGTCCCATcc                                                                                                                            >  2:700946/1‑149 (MQ=255)                          ggTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCg                                                                                                                           >  2:415972/1‑149 (MQ=255)                           gTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg                                                                                                                          >  1:93155/1‑149 (MQ=255)                           gTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg                                                                                                                          >  1:154222/1‑149 (MQ=255)                            tcaatcaaACTGATATTTGGTTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                                                                         <  2:154222/149‑1 (MQ=255)                            tcaatcaaACTGATATTTGGTTGAACAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                                                                         >  1:931822/1‑149 (MQ=255)                              aatcaaACTGATATTTGGTTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCaa                                                                                                                       >  1:799185/1‑149 (MQ=255)                               atcaaACTGATATTTGGTTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCaaa                                                                                                                      >  1:1004449/1‑149 (MQ=255)                                  aaaCTGATATTTGGTTGACCAGTTTTCGTTTTTTTGCCCACCTGTACTTGCCAACTTCCAGTGCTAATGGTATAGTTTGCGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGAGTCCACGCCCAACCCGGCaaaatt                                                                                                                   >  2:441476/1‑147 (MQ=255)                                     cTGATATTTGGTTGACGAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTCTAGTTTGAGATTAACGGGGGCCGTAAAATTGCCGGTTGTAGGATGGGTAAGGCGTTCACGCCGCATACGGCATAAATTTg                                                                                                                >  1:160601/1‑149 (MQ=255)                                          agttGGTTGACCAGTTTTCGTGTTTTTGCCCACCTGTACGTGCCAACATCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTaa                                                                                                           <  1:450690/147‑1 (MQ=255)                                           tttGGTTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGGCGGTTAAGGCGTTCACGCCGCATCCGGGCAACATTTGATTAAc                                                                                                          >  1:373142/1‑149 (MQ=255)                                                        ttttCGTTTTTTGGCCCACCTGGACGTGCCAACTTCCAGGGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACTCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGa                                                                                             <  1:259771/149‑1 (MQ=255)                                                         tttCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGac                                                                                            <  1:47540/149‑1 (MQ=255)                                                          ttCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTTATTAACCGCACCTCACGGaga                                                                                           >  2:715215/1‑147 (MQ=255)                                                          ttCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGaca                                                                                           <  2:783058/149‑1 (MQ=255)                                                              tttttttGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGAcaccac                                                                                       >  1:292039/1‑149 (MQ=255)                                                                tttttGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAacac                                                                                     <  2:1056492/149‑1 (MQ=255)                                                                      cccACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCAGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCAtcca                                                                               >  1:551166/1‑146 (MQ=255)                                                                       ccACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGCGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCCCACCTAACGGACACAACACCATGaaa                                                                              >  1:448278/1‑149 (MQ=255)                                                                        cACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACg                                                                                               >  1:971684/1‑131 (MQ=255)                                                                        cACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACg                                                                                               <  2:971684/131‑1 (MQ=255)                                                                        cACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAAt                                                                             >  2:690512/1‑149 (MQ=255)                                                                            tctactcgCCAACGTCCAGTGCTAATGTTATAGTTTGAGATTAACGGGGGCCTTAAAATTTCCCGTTTTAGGCCGAATAAGGAGTTCACTCCGCCTATGGCGCGAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGc                                                                         <  1:1060850/142‑1 (MQ=255)                                                                            tGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGc                                                                         <  2:120735/149‑1 (MQ=255)                                                                              tACGTGCCAGCTTCCAGTGCTAATGGTATAGTTGGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCa                                                                       <  2:21695/149‑1 (MQ=255)                                                                              tACGTCCCAACTTCCCGTGCTAATGGTATAGTTTGAGATAGAGGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGATTACACTTCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCa                                                                       <  1:902904/149‑1 (MQ=255)                                                                                    ccAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCAACCTCTg                                                                 >  1:800243/1‑149 (MQ=255)                                                                                          tCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCATCTCTGCGCaaa                                                           <  1:678547/149‑1 (MQ=255)                                                                                           ccAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAAc                                                                                                          <  2:435318/101‑1 (MQ=255)                                                                                           ccAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAAc                                                                                                          >  1:435318/1‑101 (MQ=255)                                                                                            cAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGa                                                         >  1:689884/1‑149 (MQ=255)                                                                                              gTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGAcc                                                       <  1:415972/149‑1 (MQ=255)                                                                                              gTGCTAATGGTATAGTTTGAGATTAACGGCGGCCGTAAAATTGCCCGTTGTAGTCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGAcc                                                       <  1:827194/149‑1 (MQ=255)                                                                                               tGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAGATCTGCCACCTCTGCGCAAAGACCt                                                      >  1:656929/1‑149 (MQ=255)                                                                                                  tAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTaa                                                                                                           >  1:415384/1‑93 (MQ=255)                                                                                                  tAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTaa                                                                                                           <  2:415384/93‑1 (MQ=255)                                                                                                  tAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTAc                                                   <  1:558104/149‑1 (MQ=255)                                                                                                        tataGTTTGAGATTAACGGGGGCCGTAACATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGaa                                             <  2:87209/149‑1 (MQ=255)                                                                                                        tataGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTCGGCCGGATAAGGCGTTCACGCCGAATACGGCAAACATTTCATTATACGCTTCTTACGAACACTAGACCATGAAATCTGCTTCCTCGGCGCAAAGACCTTACCAGGaa                                             <  2:215859/149‑1 (MQ=255)                                                                                                        tataGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGaa                                             <  1:771262/149‑1 (MQ=255)                                                                                                        tataGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGAACACAACCCCATGAAACCTGCCACCTCTGCGCAACGACCTTACCCGGaa                                             >  2:232289/1‑149 (MQ=39)                                                                                                          taGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGt                                           <  2:589101/149‑1 (MQ=255)                                                                                                            gTTTGAGATTAACGGGGGCCGTAAAAGTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCg                                         <  1:741325/149‑1 (MQ=255)                                                                                                             tttGAGATTCACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCgg                                        <  2:73891/149‑1 (MQ=255)                                                                                                             tttGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCgg                                        >  2:705526/1‑149 (MQ=255)                                                                                                               tGAGATTAACGGGGGGCGTAAAATTGCCCGTTGTGGGTCGGATAAGGCGTTCACGGCGGATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCgggg                                      <  2:846231/149‑1 (MQ=39)                                                                                                               tGAGATTAACGAGGGCCGTAAAATTGCCCGTTGTCGGCCGGATAAGGCGTTCACGCCGACTCCGGCAAAACTTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGCAGTCcggg                                      >  2:450000/1‑149 (MQ=255)                                                                                                               tGAGATAAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCgggg                                      <  2:373142/149‑1 (MQ=255)                                                                                                                 agaTTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCaaa                                                                                                                      >  1:879979/1‑67 (MQ=255)                                                                                                                 agaTTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCaaa                                                                                                                      <  2:879979/67‑1 (MQ=255)                                                                                                                  gaTTAACGGGGGCCGTAAAGTTGCCGGTGGTGGGCAGGACAAGGGCTTCGGCCCGCATGCGGCAAAAATGTAAATAGCCGCACCAAGCGTACACAGCATCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCga                                   <  2:95180/149‑1 (MQ=255)                                                                                                                     tAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGc                                     <  2:35421/144‑1 (MQ=255)                                                                                                                     tAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGc                                     >  1:35421/1‑144 (MQ=255)                                                                                                                       aCGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAGATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATc                              <  2:656929/149‑1 (MQ=255)                                                                                                                            ggCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCAcgcc                                                                                                                                  <  2:965564/44‑1 (MQ=255)                                                                                                                            ggCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCAcgcc                                                                                                                                  >  1:965564/1‑44 (MQ=255)                                                                                                                            ggCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGa                         <  1:657574/149‑1 (MQ=255)                                                                                                                              ccGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCGACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATc                       <  2:931822/149‑1 (MQ=255)                                                                                                                              ccGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATc                       <  2:1004449/149‑1 (MQ=255)                                                                                                                               cGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCt                      <  1:827814/149‑1 (MQ=255)                                                                                                                                gTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTg                     >  1:488437/1‑149 (MQ=255)                                                                                                                                 tAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGa                    >  2:705682/1‑149 (MQ=255)                                                                                                                                   aaaTTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATATGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGCTGATCCGCGATCTGATc                  >  1:265688/1‑149 (MQ=255)                                                                                                                                           cGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCGTCTGCCTTTCCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGAc          >  1:1052109/1‑149 (MQ=38)                                                                                                                                            gTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCGGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCCTAAAGACg         >  2:547523/1‑149 (MQ=255)                                                                                                                                            gTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAAACTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGAGCATAAAGACg         >  2:755005/1‑149 (MQ=255)                                                                                                                                              tGTAGGCAGAATAAGGCGATCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGcc       <  1:408338/149‑1 (MQ=255)                                                                                                                                                   gCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGGTCCGCGATCTGATCATAAGGACGCCGTACa  >  1:427470/1‑149 (MQ=255)                                                                                                                                                   gCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACa  >  1:537928/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     TAACTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACA  >  NC_000913_3_pae_pgi/4553623‑4553917

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.