New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	411241 =	82 (1.330)	9 (0.150)	7/270	6.7	10.7%	noncoding (164/191 nt)	REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913_3_pae_pgi	3676216 =	71 (1.200)					noncoding (96/161 nt)	RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGCCAGT  >  NC_000913_3_pae_pgi/3676068‑3676362                                                                                                                                                     |                                                                                                                                                   cccTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTACTAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGACTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCgg                                                                                                                                                    >  1:987405/1‑149 (MQ=255)   tagctgctgACCCATGAGTCGTGATATCAGTCGTTGTGGTCAAGGTCGAGAGCCTGATGCTCTGCGCTTATCAGGCCGGAATTTCCATACTATTTATTGAGTTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCa                                                                                                                                                  <  2:114228/147‑1 (MQ=18)   ctgctgctgACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa                                                                                                                                                  <  1:422698/149‑1 (MQ=255)            atccATGTGACGCGACATTAATCGTTTTATAAAGGTTGAAAAGCCTGATGCGCTACGCTTACCAGGTCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGTCGTTCACGCCGCACCCTGCATGAACAAAg                                                                                                                                         <  2:254196/147‑1 (MQ=21)            aCCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCGGGGTAAGGGGTTGTCGCCGGGTCGGGCGTGGACaagg                                                                                                                                         >  1:282209/1‑147 (MQ=37)              ccATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAAc                                                                                                                                             <  1:578167/143‑1 (MQ=255)              ccATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAAc                                                                                                                                             >  2:578167/1‑143 (MQ=255)              ccATCACACGCGAAATCAGCCCTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCCCCAAGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGca                                                                                                                                       <  1:212335/149‑1 (MQ=25)              acATGAGACGCGAAATCAGTCGTTGTAATAAGAGTGAAAATACTGATGGGCTAAGCTTATCAGGCGTGAAATTCGATAAAATATAATGAATTCGCAAAGATTTGTAGGCGGGATAAGGCGTTGAAGCCGCATCCGGCGTGAACAAAgat                                                                                                                                       >  2:56873/2‑147 (MQ=255)                 tGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCacac                                                                                                                                    >  1:548714/1‑149 (MQ=255)                    gaCACGACATCAGTCGTTGTATTAAGAGTGAAAAGCCTGATGCGCGACGCATATCAAGCCTGAATTGCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGTCGTTCACGCCGCATCCGGCCTGCACGAAGCAAACttt                                                                                                                                 >  2:60567/1‑149 (MQ=25)                      cgcgACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGc                                                                                                                               >  2:443871/1‑149 (MQ=255)                      cgcgACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGAGTTCTCGCCGCATCCGGCATGAACAAAGCACACTTTGc                                                                                                                               <  1:908389/149‑1 (MQ=255)                       gcgACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCACGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGcc                                                                                                                              >  1:694145/1‑149 (MQ=255)                       gcgACATCAGTCGTTGTAATAAGAGCGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGcc                                                                                                                              >  2:72737/1‑149 (MQ=255)                          aCATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa                                                                                                                                                  >  1:211372/1‑126 (MQ=255)                          aCATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa                                                                                                                                                  <  2:211372/126‑1 (MQ=255)                            aTCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAAAAAAGCCCACTTTGCcaacaa                                                                                                                         >  1:537329/1‑149 (MQ=255)                                 tCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTaa                                                                                                                    <  1:342497/149‑1 (MQ=255)                                 tCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTaa                                                                                                                    >  2:996602/1‑149 (MQ=255)                                        aataaGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGtt                                                                                                             <  2:39115/149‑1 (MQ=255)                                          taaGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCcaa                                                                                                                            >  1:103142/1‑132 (MQ=255)                                          taaGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCcaa                                                                                                                            <  2:103142/132‑1 (MQ=255)                                             gagTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAAtc                                                                                                        >  1:56054/1‑148 (MQ=255)                                               gTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGc                                                                                                      >  2:1008037/1‑149 (MQ=255)                                                tGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTACCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGcc                                                                                                     >  2:946342/1‑149 (MQ=255)                                                 gAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCg                                                                                                    <  1:101016/149‑1 (MQ=255)                                                       ccTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTc                                                                                              <  2:2673/149‑1 (MQ=255)                                                        cTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTct                                                                                             <  1:646707/149‑2 (MQ=255)                                                        cTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCa                                                                                             <  1:983824/149‑1 (MQ=255)                                                         tGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAg                                                                                            >  2:140211/1‑149 (MQ=255)                                                            tGCGCTACGCTTATCAGGCCTGAATTTCAATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCGGGATGTCAAACa                                                                                         >  1:217411/1‑149 (MQ=255)                                                              ctcTACGCTTATCAGGTCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATc                                                                                       <  1:595377/147‑1 (MQ=255)                                                               tcTACGCTTATCAGGCCTGAATTTCCAAACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATcc                                                                                      <  1:365414/148‑1 (MQ=255)                                                               gcTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATcc                                                                                      <  1:710404/149‑1 (MQ=255)                                                                     cTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTACATCTGTTTAATTGCCGGATGTCAGACATCCGGCAAt                                                                                >  2:60845/1‑149 (MQ=255)                                                                      tcaTCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAAtt                                                                               >  2:941882/3‑149 (MQ=255)                                                                        aTCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCg                                                                                                    <  1:800866/126‑1 (MQ=255)                                                                        aTCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCg                                                                                                    >  2:800866/1‑126 (MQ=255)                                                                         tCAGGCCTGAATTTCAATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCTGACATCCGGCAATTaaa                                                                            <  1:795127/149‑3 (MQ=255)                                                                                tGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActt                                                                     >  1:686965/1‑149 (MQ=255)                                                                                  aaTTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActtct                                                                   >  1:849810/1‑149 (MQ=255)                                                                                          tACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATATGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGc                                                           >  1:1010416/1‑149 (MQ=255)                                                                                                    tGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCg                                                 <  2:686965/149‑1 (MQ=255)                                                                                                     gacttCGAAAGGATTTGTAGGCGGGATAAGGCGTTCACGCCGCATGCGGCATGAACAAAGCACACTTTGCAAAAAATCTAACCCGGTTTAATTGCCGGATGTAAGACAGCCGGCAATTATCATCACTTCTGCATCTGCTACAAAATCGt                                                <  2:873545/146‑1 (MQ=25)                                                                                                      aaTTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTc                                               <  2:306581/149‑1 (MQ=255)                                                                                                       aTTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTcc                                              <  1:941882/149‑1 (MQ=255)                                                                                                           gCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAAACATCCGGCAATTATCATCACTTCTTCATCTGCGCCAAAACCgccagcca                                          >  2:882767/1‑142 (MQ=37)                                                                                                            cAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCg                                                                                                    <  1:867716/90‑1 (MQ=255)                                                                                                            cAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCg                                                                                                    >  2:867716/1‑90 (MQ=255)                                                                                                            cAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGacac                                         <  1:443871/149‑1 (MQ=255)                                                                                                             caGGATTTGTAGGCCGTATAAGCCGTTCACGCCTCATCCGGCATGAACAAAGCACACTCTGCCAACAATCTACACCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt                                        <  1:86257/148‑1 (MQ=38)                                                                                                             aaGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt                                        >  2:3901/1‑149 (MQ=255)                                                                                                             aaGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt                                        >  1:149304/1‑149 (MQ=255)                                                                                                              aGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg                                       >  2:675190/1‑149 (MQ=255)                                                                                                              aGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAAAAGTCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg                                       >  2:675107/1‑149 (MQ=255)                                                                                                                  tttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTa                                   <  1:996602/149‑1 (MQ=255)                                                                                                                     gTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGATCTTCAACGAGTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGcc                                >  1:250850/1‑149 (MQ=37)                                                                                                                      tAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCACCTGAGACAAAATCGTACGACACTGATAAACCt                               >  1:574522/1‑149 (MQ=38)                                                                                                                       aGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTc                              <  2:682467/149‑1 (MQ=255)                                                                                                                           cGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACACAATCGTCCGACACTGATTAGCCTCCCCt                          >  1:319330/1‑149 (MQ=255)                                                                                                                             gATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTc                        <  2:149304/149‑1 (MQ=255)                                                                                                                              aTAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGCCCTCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCg                       <  1:60845/149‑1 (MQ=255)                                                                                                                                  ggCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAg                   >  2:519305/1‑149 (MQ=255)                                                                                                                                  ggCGTCCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAg                   <  2:51915/149‑1 (MQ=255)                                                                                                                                   ggggtCACGCCGCATCCGGCATGAACAAAGCACACCGTGCCAACAATTTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAgg                  <  2:231571/145‑1 (MQ=255)                                                                                                                                    cGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGt                 <  1:72737/149‑1 (MQ=255)                                                                                                                                           gccgcATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCa          <  1:328366/149‑1 (MQ=255)                                                                                                                                             cgcATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGt        >  2:791662/1‑149 (MQ=255)                                                                                                                                               cATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGc      <  1:519305/149‑1 (MQ=255)                                                                                                                                               cATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGc      <  1:140211/149‑1 (MQ=255)                                                                                                                                                   cGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTc                                               <  2:182847/104‑1 (MQ=255)                                                                                                                                                   cGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTc                                               >  1:182847/1‑104 (MQ=255)                                                                                                                                                   cGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGCCAGt  <  2:548714/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGGAAGGTGAGATCAGTGCCAGT  >  NC_000913_3_pae_pgi/3676068‑3676362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.