| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_pae_pgi | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_pae_pgi | 1978503–1979270 | 1979278 | 9–776 | 40 [0] | [0] 40 | insB1–insA | insB1,insA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 1978502 | 0 (0.000) | 37 (0.970) | 34/264 | 0.2 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913_3_pae_pgi | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
AAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGC > NC_000913_3_pae_pgi/1978357‑1978644 | aaaTGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtat > 2:118819‑M1/1‑146 (MQ=255) aTGTGTCTTTACACTTATTGAAGACTTTTCCTAAATCGACGCAACTGTACTCGTCACTCCACGCACATACAACGGAGGGGGGCTGCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa < 2:625897‑M1/149‑6 (MQ=255) gTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtca > 1:652265‑M1/1‑140 (MQ=255) tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatac > 2:410824‑M1/1‑137 (MQ=255) tATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATT‑TTCAATAATGAGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttt < 1:564816‑M1/149‑21 (MQ=255) cTAAGATTTTTCCCAAATCGATGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACACTCTATTACTTAACATAAATGtataagtcatacttttgttttgg < 2:350510‑M1/149‑24 (MQ=255) aaGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt < 1:603721‑M1/149‑26 (MQ=255) tttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat < 2:454465‑M1/149‑30 (MQ=255) cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat > 1:363264‑M1/1‑114 (MQ=255) aaaTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatct < 1:564044‑M1/149‑38 (MQ=255) gCAACTGTACCCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa < 1:243382‑M1/149‑46 (MQ=255) cTCGTCACTACACGCACATACAACGGAGGGGGGATAAGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgc > 2:338298‑M1/1‑95 (MQ=255) tCGTCACTACACGCACATACAACGGAGGGGGCCTG‑GATCAATCATTAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgct > 1:533750‑M1/1‑94 (MQ=255) cTACACGCACATACAACGGAGGGGGGCTGCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACAGTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta < 2:619884‑M1/149‑62 (MQ=255) tACACGCACATACAACGGAGGGGGGCTGCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattacaatctgttaaaaagtttttcgctacgctag > 2:63984‑M1/1‑87 (MQ=255) acGGACAGACAACGGAGGGTGGATGCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTAATTAACATAAATGtataagtcatacttttgttttgggggtatttcaatctgttaaaaagtttttcgctacgctagcaa < 2:200311‑M1/149‑66 (MQ=255) acGCACATACAACGGAGGGGGGCTGCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaa < 2:363264‑M1/149‑66 (MQ=255) tctaacggGGGGGGGCTGCGATT‑TTAAATAATGCGTGATGCAGATCATACAAAACACTCAATGACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa < 1:313823‑M1/146‑73 (MQ=255) cGGAGGGGGGCTGCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACATTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa < 1:142806‑M1/149‑78 (MQ=255) cGGAGGGGGGCTGCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa < 1:410824‑M1/149‑78 (MQ=255) cGGAGGGGGGCTGCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatccgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa < 2:668447‑M1/149‑78 (MQ=255) gggggCTGCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga > 1:298729‑M1/1‑67 (MQ=255) gggCTGCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgataaaaagtttttcgctacgctagccagcaaacatgaaacaggcat > 2:320979‑M1/1‑65 (MQ=255) gCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctcgctaccaaaaatgaaacaggaataatcg > 2:330856‑M1/1‑60 (MQ=255) tGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataaaagaaatgagatgttgc > 1:397332‑M1/1‑46 (MQ=255) gCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtgttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcg > 1:499524‑M1/1‑45 (MQ=255) cGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttttttttttttttcaagcaaaaatgaaacaggaataatcgtaatgggattttacgg > 2:533940‑M1/1‑44 (MQ=255) gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgca < 1:118819‑M1/149‑107 (MQ=255) aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacag < 1:338298‑M1/149‑110 (MQ=255) cAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtca > 1:484957‑M1/1‑37 (MQ=255) aTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa < 2:331503‑M1/149‑116 (MQ=255) acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtacttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa < 2:652265‑M1/149‑119 (MQ=255) acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataact > 2:511844‑M1/1‑29 (MQ=255) aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactca < 1:283724‑M1/149‑123 (MQ=255) aaCTCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcacc < 1:373124‑M1/149‑125 (MQ=255) aaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcacc > 2:193740‑M1/1‑25 (MQ=255) tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaa > 1:403338‑M1/1‑20 (MQ=255) aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgcta > 1:277373‑M1/1‑7 (MQ=255) aTAAATGtataagtcatacttttgttttgggtgtatttcaatctattaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgc > 2:641801‑M1/1‑7 (MQ=255) aTAAATGtataagtcatacttttgttttgggtgtatttcaatctattaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgc < 1:641801‑M1/110‑104 (MQ=255) | AAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATT‑TTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGC > NC_000913_3_pae_pgi/1978357‑1978644 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |