New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 1904769	35 (0.870)	5 (0.130)	5/266	4.8	13.1%	intergenic (+23/‑32)	manZ/yobD	mannose‑specific enzyme IID component of PTS/UPF0266 family inner membrane protein
	?	NC_000913_3_pae_pgi	= 1904773	33 (0.860)					intergenic (+27/‑28)	manZ/yobD	mannose‑specific enzyme IID component of PTS/UPF0266 family inner membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCTGCTGACCTTTGCTTGTATGTGGCTACTGCGCAAAAAAGTTAACCCGCTGTGGATCATCGTTGGCTTCTTCGTCATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTACTGATTCTTTTCATCGCCGCACTCCTGGCCTTCGCGATCTACGATCAGTTCATCATGCCCCGCCGTAACGGCCCCACCCTGCTGGCAATTCCTT  >  NC_000913_3_pae_pgi/1904628‑1904915                                                                                                                                                  |                                                                                                                                               tgctgctgACCTTTGCTCGCATGTGGCTACAGCGCACAAAAGTTAACCCGCTGTGGATCATCGTTGGCTTCTTCGTCATCGGTATCGCTGGTTACGCTTGCGGCCTTCCGGGACTGTAAGACTGCTGTACACCACCGGGGCCCTTTGGc                                                                                                                                             >  2:578181/1‑149 (MQ=255)   ctgctgACCTTTGCTTGTATGTGACTACTGCGCAAAAAAGTTAACCCGCTGTGGATCATCGTTGGCTTCTTCGTCATCGGTATCGCTCGTTACGCTTGCGGCCTGCTGGGACTGCAAGACTGTTGTACACTACCGGGGCCTTTTGGccc                                                                                                                                           <  1:605438/149‑1 (MQ=255)      ctgACCTTTGCTTGTATGTGGCTACTGCGCAAAAAAGTTAACCCGCTGTGGATCATCGTTGGCTTCTTCGTCATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGt                                                                                                                                        >  1:374957/1‑149 (MQ=255)        gACCTTTGCTTGTATGTGGCTACTGCGCAAAAAAGTTAACCCGCTGTGGATCATCGTTGGCTTCTTCGTCATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGttt                                                                                                                                      >  2:248501/1‑149 (MQ=255)                 ttGTATGTGGCTACTGCGCAAAAAAGTTAACCCGCTGTGGATCATCGTTGGCTTCTTCGTCATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCGCCGTTTTTTTATCTg                                                                                                                             >  2:233113/1‑149 (MQ=255)                           cTACTGCGCAAAAAAGTTAACCCGCTGTGGATCATCGTTGGCTTCTTCGTCATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAAt                                                                                                                   <  1:248501/149‑1 (MQ=255)                               tGCGCAAAAAAGTTAACCCGCTGCGGATCATCGTTGGCTTCTTCTGCATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGCTTTATTATCTGGCGGATTCATGACa                                                                                                               >  1:568542/1‑149 (MQ=255)                                 cgcAAAAAAGTTAACCCGCTGTGGATCATCGTTGGCTTCTTCGTCATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTGTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAAt                                                                                                             >  1:566759/1‑149 (MQ=255)                                  gcAAAAAAGTTAACCCGCTGTGGATCATCGTTGGCTTCTTCGTCATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATc                                                                                                            >  2:526826/1‑149 (MQ=255)                                     aaaaaGTTAACCCGCTGTGGATCATCGTTGGCTTCTTCCTCATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTGTTGGCCCCGTTTTTTTATCTTGAGGATTGATGCAAATcgag                                                                                                         >  2:204284/1‑146 (MQ=255)                                       aaaGTTAACCCGCTGTGGATCATCGTTGGCTTCTTCGTCATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGa                                                                                                       <  1:18165/149‑1 (MQ=255)                                       aaaGTTAACCCGCTGTGGATCATCGTTGGCTTCTTCGTCATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGa                                                                                                       <  1:450633/149‑1 (MQ=255)                                              aCCCGCTGTGGATCATCGTTGGCTTCTTCGTTATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTa                                                                                                <  2:34542/149‑1 (MQ=255)                                              aCCCGCTGTGGATCATCGTTGGCTTCTTCGTCATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTa                                                                                                <  1:372940/149‑1 (MQ=255)                                                        gATCATCGTTGGCTTCTTCGTCATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTACTGATTCttt                                                                                      <  1:526826/149‑1 (MQ=255)                                                        gATCATCGTTGGCTTCTTCGTCATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACGGTTGTACACTACCGGTGCCTTTTGGCTCCGCTTTCTTATCTGGAGGGTTAATGTCCATCACGTCCCTGGCACTTCTTCttt                                                                                      >  2:357635/1‑149 (MQ=255)                                                          tcatcGTTGGCTTCTTCGTCATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTACTGTTTCTTTTc                                                                                    >  1:592135/1‑149 (MQ=255)                                                           catcGTTGGCTTCTTCGTCATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTACTGATTCTTTTCa                                                                                   >  2:579793/1‑149 (MQ=255)                                                                   gCTTCTTCGTCATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTACTGCTTCTTTTCATcgcggcc                                                                           >  2:539381/1‑148 (MQ=255)                                                                           gTCATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCCTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTAGTGATTCTTTTCATCCCCGCCCTCCTGGc                                                                   >  1:112291/1‑149 (MQ=255)                                                                                  gTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTACTGATTCTTTTCATCGCCGCACTCCTGGCCTTcgcg                                                            >  1:314479/1‑149 (MQ=255)                                                                                    ggtgCTGGTTGCGCTGGGTGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTACTGTTTCTTTTCATCGTCGCACTTCTTGCCTTCGTGAt                                                          <  2:137507/146‑1 (MQ=255)                                                                                     tCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTACTGATTCTTTTCATCGCCGCAGTACTGGCCTTCGCGATc                                                         >  1:409215/1‑149 (MQ=255)                                                                                           gTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTACTGATTCTTTTCATCGCCGCACTCCTGGCCTTCGCGATCTACGAt                                                   <  1:570914/149‑1 (MQ=255)                                                                                           gTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTACTGATTCTTTTCATCGCCGCACTCCTGGCCTTCGCGATCTACGAt                                                   <  2:314479/149‑1 (MQ=255)                                                                                                             tgGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTACTGATTCTTTTCATCGCCGCACTCCTGGCCTTCGCGATCTACGATCAGTTCATCATGCCccgc                                 >  2:599960/1‑149 (MQ=255)                                                                                                              gggACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTACTGATTCTTTTCATCGCCGCACTCCTGGCCTTCGCGATCTACGAt                                                   <  2:180157/130‑1 (MQ=255)                                                                                                              gggACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTACTGATTCTTTTCATCGCCGCACTCCTGGCCTTCGCGATCTACGAt                                                   >  1:180157/1‑130 (MQ=255)                                                                                                                     tAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTACTGATTCTTTTCATCGCCGCACTCCTGGCCTTCTCGATCTACGATCCGTTCATCATGCCCCCGCGTAACgg                         >  2:187214/1‑149 (MQ=255)                                                                                                                     tAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTACTGATTCTTTTCATCGCCGCACTCCTGGCCTTCGCGAt                                                          <  1:635341/116‑1 (MQ=255)                                                                                                                     tAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTACTGATTCTTTTCATCGCCGCACTCCTGGCCTTCGCGAt                                                          >  2:635341/1‑116 (MQ=255)                                                                                                                                        cGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTACTGATTCTTTTCATCGCCGCACTCCTGGCCTTCGCGATCTACGATCAGTTCATCATGCCCCGCCGTAACGGCCCCACCCTGCTGGCCAtt      >  2:67439/1‑149 (MQ=255)                                                                                                                                          gggCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTACTGATTCttt                                                                                      >  2:551330/1‑67 (MQ=255)                                                                                                                                          gggCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTACTGATTCttt                                                                                      <  1:551330/67‑1 (MQ=255)                                                                                                                                            gCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTACTGATTCTTTTCATCGCCGCACTCCTGGCCTTCGCGATCTACGATCAGTTCATCATGCCCCGCCGTACCGGCCCCACCCTGCTGGCAATTCCtt  >  1:188144/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                               TGCTGCTGACCTTTGCTTGTATGTGGCTACTGCGCAAAAAAGTTAACCCGCTGTGGATCATCGTTGGCTTCTTCGTCATCGGTATCGCTGGTTACGCTTGCGGCCTGCTGGGACTGTAAGACTGTTGTACACTACCGGGGCCTTTTGGCCCCGTTTTTTTATCTGGAGGATTAATGACAATCACGGACCTGGTACTGATTCTTTTCATCGCCGCACTCCTGGCCTTCGCGATCTACGATCAGTTCATCATGCCCCGCCGTAACGGCCCCACCCTGCTGGCAATTCCTT  >  NC_000913_3_pae_pgi/1904628‑1904915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.