New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 3980725	57 (1.420)	4 (0.110)	4/258	5.2	7.0%	intergenic (+29/‑162)	wecG/yifK	UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative APC family amino acid transporter
	?	NC_000913_3_pae_pgi	= 3980727	53 (1.430)					intergenic (+31/‑160)	wecG/yifK	UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative APC family amino acid transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGGCAAACGCTGGGGCTGGAGTGGCTCTACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGATAACCGGTAACACCGGAAAGCATGCAAACA  >  NC_000913_3_pae_pgi/3980583‑3980872                                                                                                                                                 |                                                                                                                                                  tGGCAAACGCTGGGGCTGGAGTGGCTCTACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTCAAGCGACGGAGTGGTCACt                                                                                                                                               >  1:24641/1‑149 (MQ=255)  ggcgagcGCTGGGGCTGGAGGGGCGCTACCGCCTGCTTTCGCAGCCGAGCCGCATTAATCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGTTACTTCACCGGCAACCTATGATTTGCCTGGCTTTGTAAGGCGACGGAGTGGTCACTc                                                                                                                                              <  2:390181/143‑1 (MQ=255)     aaaCGCTGGGGCTGGAGTGGCTCTACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGACCACTCCGt                                                                                                                                           <  1:653078/149‑1 (MQ=255)      aaCGCTGGGGCTGGAGTGGCTCTACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCCCTTTGTAAAGCGACGGAGTGGTCCATCCGTc                                                                                                                                          >  2:110091/1‑149 (MQ=255)       aCGCTGGGGCTGGAGTGGCTCTACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCg                                                                                                                                         >  2:134601/1‑149 (MQ=255)          cTGGGGCTGGAGTGGCTCTACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCt                                                                                                                                      <  1:574524/149‑1 (MQ=255)           tGGGGCTGGAGTGGCTCTACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTg                                                                                                                                     >  2:488603/1‑149 (MQ=255)                cTGGAGTGGCTCTACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTGGCCTGTCTGc                                                                                                                                >  1:204715/1‑149 (MQ=255)                  ggAGGGGCTGTACCGCCTGCTTTCGGCGCCGAGCCGCATTACGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGGACTACACCGGCAACTGACGATTTGTCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCtt                                                                                                                              <  2:63769/149‑1 (MQ=255)                   gAGTGGCTCTACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCttt                                                                                                                             >  1:247978/1‑149 (MQ=255)                   gAGTGGCTCTACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCttt                                                                                                                             >  1:653362/1‑149 (MQ=255)                       ggCTCTACCGCCTGCTTTCGCAGCCGAGCCCCATTAGGCGTCAGCCTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTtta                                                                                                                         <  1:573940/149‑1 (MQ=255)                        gCTCTACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTttat                                                                                                                        <  2:710474/149‑1 (MQ=255)                         cactACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGGTATTTACGCTGGCACTACAGCGGGAACCTACGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTttatt                                                                                                                       <  1:461100/147‑1 (MQ=255)                          tctACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACAGAGAGGTCACTCCGTCGCCTGTCTGCTTTTttatta                                                                                                                      >  1:196643/1‑149 (MQ=255)                          tccaCCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTttatta                                                                                                                      <  1:110091/146‑1 (MQ=255)                                 ccgccTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTTCCCCGGCATCCTATGATTTTCCTCTCTTTTTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAg                                                                                                               <  2:79329/145‑1 (MQ=255)                                      tttCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAACCATTc                                                                                                          >  2:683702/1‑149 (MQ=255)                                                         tAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTAtt                                                                                       <  2:466735/149‑1 (MQ=255)                                                         tAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTAtt                                                                                       >  2:582189/1‑149 (MQ=255)                                                         tAAGCGTCAGCTTCGTTTGCTGCGTGATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTCGTCACTCCGTCGCCACTCTTCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTAtt                                                                                       <  1:706930/149‑1 (MQ=255)                                                                  gCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTtc                                                                              >  2:18526/1‑149 (MQ=255)                                                                    ttCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTtctc                                                                            <  2:247978/149‑1 (MQ=255)                                                                              gcGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACg                                                                  >  1:128963/1‑149 (MQ=255)                                                                                    tttACGCTGGCACTACACCGGCAACCTATGATTTTCCGCTCTATGTAAAGCGACGGAGTGGTACCTCCGTCCCCTGTCTGCTTTTTTATTACACAAAGCATCCAAATTATTAATCCTTTATTTGCCATTTCTCCTCAATTACGacaaca                                                            >  2:648322/1‑149 (MQ=255)                                                                                       aCGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACGAAAACAttt                                                         <  1:462557/149‑1 (MQ=255)                                                                                         gCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTtta                                                                                                                         <  2:539474/83‑1 (MQ=255)                                                                                         gCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTtta                                                                                                                         >  1:539474/1‑83 (MQ=255)                                                                                         gCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAGTGCTTTATTTACCATTTCTCCTGAATTACGAAAACATTTGc                                                       >  2:453985/1‑149 (MQ=255)                                                                                         gCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTAc                                                                   <  2:171135/137‑1 (MQ=255)                                                                                         gCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTAc                                                                   >  1:171135/1‑137 (MQ=255)                                                                                           tGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTCAATTACGAAAACATTTGCaa                                                     >  2:132244/1‑149 (MQ=255)                                                                                             gCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACGAGAACATTTGCAcca                                                   >  1:93856/1‑149 (MQ=255)                                                                                               aCTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTtctc                                                                            <  2:568361/122‑1 (MQ=255)                                                                                               aCTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTtctc                                                                            >  1:568361/1‑122 (MQ=255)                                                                                               aCTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACACCGTCGCCCGTCTGCTTTTTTATTACACAACGCATTCAAATTTTTACTGCTTTATTTACAACTTCCCCTGACTTCCGAAACCCTTTGCCacccc                                                 >  2:635655/1‑146 (MQ=255)                                                                                                  acacCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGa                                              <  2:422147/149‑1 (MQ=255)                                                                                                    acCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATg                                            >  2:371940/1‑149 (MQ=255)                                                                                                      cGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCTTGAATTACGAAAACATTTGCAAAATTGGATGTa                                          >  1:256889/1‑149 (MQ=255)                                                                                                      cGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTa                                          <  1:488603/149‑1 (MQ=255)                                                                                                         tcaCCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTTTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTAccc                                       <  2:31389/147‑1 (MQ=255)                                                                                                         cAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTacac                                                                                                                   <  1:126291/73‑1 (MQ=255)                                                                                                         cAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTacac                                                                                                                   >  2:126291/1‑73 (MQ=255)                                                                                                             cTATGACTTTCCTGTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATGTTTAATGCTTTATTTGCCATTTCCCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATaa                                   <  1:221434/149‑1 (MQ=255)                                                                                                              tATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAAc                                  >  1:84637/1‑149 (MQ=255)                                                                                                              tATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAAc                                  >  1:84048/1‑149 (MQ=255)                                                                                                              tATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAAc                                  <  1:18526/149‑1 (MQ=255)                                                                                                              tATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACGAAAACATTTGCAAAACTCGATGTACCCATaag                                  >  1:57505/1‑148 (MQ=255)                                                                                                                tGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGa                                >  1:32393/1‑149 (MQ=255)                                                                                                                        ctctctTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTTCGAAAACATTTGCAACACTCGATGTACCCATAACGATAACCGGt                        >  1:568761/1‑149 (MQ=255)                                                                                                                           tctTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGATAACCGGTAac                     >  2:581230/1‑149 (MQ=255)                                                                                                                            ctTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGATAACCGGTAaca                    <  1:683702/149‑1 (MQ=255)                                                                                                                                   aaGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGATAACCGGTAACACCGGaaa             >  1:26015/1‑149 (MQ=255)                                                                                                                                      cGACGCAGTGGTCCATCCGTCGCCTGTCGGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACGAAAACATTGGCAACACTCGATGTACCCATAACGATAACCGGTAACACCGGAAAGCa          <  2:325016/149‑1 (MQ=255)                                                                                                                                        aCGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGATAACCGGTAacac                   >  2:235715/1‑138 (MQ=255)                                                                                                                                        aCGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGATAACCGGTAacac                   <  1:235715/138‑1 (MQ=255)                                                                                                                                            aGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGATAACCGGTAACACCGGAAAGCATGCaaa    <  1:371940/149‑1 (MQ=255)                                                                                                                                              tGGTAACTCCGTCGCCTGTTTGCTTTTTCATTACACAAAGCATTCCAAGTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGATAACCGGTAACACCGGAAAGCATGCAaaca  <  1:134601/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                  TGGCAAACGCTGGGGCTGGAGTGGCTCTACCGCCTGCTTTCGCAGCCGAGCCGCATTAAGCGTCAGCTTCGTTTGCTGCGTTATTTACGCTGGCACTACACCGGCAACCTATGATTTTCCTCTCTTTGTAAAGCGACGGAGTGGTCACTCCGTCGCCTGTCTGCTTTTTTATTACACAAAGCATTCAAATTTTTAATGCTTTATTTGCCATTTCTCCTGAATTACGAAAACATTTGCAACACTCGATGTACCCATAACGATAACCGGTAACACCGGAAAGCATGCAAACA  >  NC_000913_3_pae_pgi/3980583‑3980872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.