New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	225456 =	10 (0.100)	24 (0.260)	15/244	8.6	72.0%	noncoding (76/77 nt)	ileV	tRNA‑Ile
	?	NC_000913_3_pae_pgi	= 3427056	NA (NA)					intergenic (‑23/+20)	alaU/ileU	tRNA‑Ala/tRNA‑Ile
Rejected: Coverage evenness skew score above cutoff.

GCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGC‑CGTGCAAATTTGGTAGGCCTGAGTGGACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTA  >  NC_000913_3_pae_pgi/3426983‑3427132                                                                          |                                                                              gcggACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGC‑CGTGCAAATTTGGTAGGCCTGAGTGGACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTa  >  4:159853/4‑150 (MQ=1)                                       gAGCTATAGCCCCATAACATGTAGTTAAAACCTCTCCAAATTTGCACG‑GCAAAttt                                                          >  1:763100/1‑56 (MQ=1)                                       gAGCTATAGCCCCATAACATGTAGTTAAAACCTCTCCAAATTTGCACG‑GCAAAttt                                                          <  2:763100/56‑1 (MQ=1)                                                                          |                                                                              GCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGC‑CGTGCAAATTTGGTAGGCCTGAGTGGACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTA  >  NC_000913_3_pae_pgi/3426983‑3427132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.