New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi = 39460533 (0.030)34 (0.340) 16/266 9.5 92.1% noncoding (2350/2904 nt) rrlC 23S ribosomal RNA of rrnC operon
?NC_000913_3_pae_pgi = 3946069 NA (NA)noncoding (2366/2904 nt) rrlC 23S ribosomal RNA of rrnC operon
Rejected: Coverage evenness skew score above cutoff.

GTGGACCCGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGA  >  NC_000913_3_pae_pgi/3945904‑3946061
                                                                                                                                                     |        
gTGGACCCGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGc          <  2:168468/150‑1 (MQ=35)
  tgACCCGTGATCCGGGTTGCGGACAGGGTCTGGTGGGTAGTTTGACTGGGGCGGTCCCGTGCTAAAGAGTAACGGAGGAGCACGAAGGTTGGGTAATCCTGGTCGGACATCAGGAGGTGAGTGCAATGGCATAAGCCAGCTTGACTGCGa        <  4:656942/149‑1 (MQ=11)
   gACCCGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTATGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAg       >  2:729646/1‑150 (MQ=17)
        gTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGa  >  4:563554/1‑150 (MQ=32)
                                                                                                                                                     |        
GTGGACCCGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGA  >  NC_000913_3_pae_pgi/3945904‑3946061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.