New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	2700066 =	113 (0.980)	14 (0.130)	13/250	11.5	12.3%	intergenic (+143/+51)	yfhL/shoB	putative 4Fe‑4S cluster‑containing protein/toxic membrane protein
	?	NC_000913_3_pae_pgi	2700100 =	97 (0.920)					intergenic (+177/+17)	yfhL/shoB	putative 4Fe‑4S cluster‑containing protein/toxic membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACTGGGAAGCCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGCAGCCATTCAGATTAGCCCTT  >  NC_000913_3_pae_pgi/2699958‑2700242                                                                                                                                               |                                                                                                                                               aCTGGGAAGCCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCGCTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGt                                                                                                                                         >  1:733964/1‑150 (MQ=255)   tGGGAAGCCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGttt                                                                                                                                       >  1:303063/1‑150 (MQ=255)      gAAGCCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCt                                                                                                                                    <  2:459944/150‑1 (MQ=255)      gAAGCCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCt                                                                                                                                    >  1:459944/1‑150 (MQ=255)      gAAGCCTTAACGACATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAATGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCt                                                                                                                                    <  4:769394/150‑1 (MQ=255)       aaGCCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCtt                                                                                                                                   <  1:746279/150‑1 (MQ=255)        aGCCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTtg                                                                                                                                  >  1:1179641/1‑150 (MQ=255)         gCCTTCACCCCATTATATTTATCTAATTGATGACATTAGAATAATCATTAAATCAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGATTCACCGGACGCACCTTAAGTACGTTTCCTtgt                                                                                                                                 >  2:1020930/1‑150 (MQ=255)         gCCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTtgt                                                                                                                                 <  2:1234481/150‑1 (MQ=255)                cGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATaa                                                                                                                          <  1:1017420/150‑1 (MQ=255)                cGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATaa                                                                                                                          <  2:826846/150‑1 (MQ=255)                  ccATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTcc                                                                                                                                     <  2:618564/137‑1 (MQ=255)                  ccATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTcc                                                                                                                                     >  1:618564/1‑137 (MQ=255)                   cATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGaa                                                                                                                       <  3:218968/150‑1 (MQ=255)                          tttatttaATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAgg                                                                                                                <  3:562485/150‑1 (MQ=255)                           ttatttaATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTGTTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGa                                                                                                               >  2:947689/1‑150 (MQ=255)                            tatttaATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAATGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGAt                                                                                                              <  2:861983/150‑1 (MQ=255)                              tttaATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCa                                                                                                            >  3:24640/1‑150 (MQ=255)                                taATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGc                                                                                                          <  2:158256/150‑1 (MQ=255)                                taATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGc                                                                                                          >  4:446253/1‑150 (MQ=255)                                 aaTTGATGACATTAGCATAATCATTCACTAAGTTAAGTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCt                                                                                                         >  3:210221/1‑150 (MQ=255)                                  aTTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTg                                                                                                        <  3:684024/150‑1 (MQ=255)                                     gatgaCATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTtgt                                                                                                                                 >  3:574423/1‑122 (MQ=255)                                     gatgaCATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTtgt                                                                                                                                 <  4:574423/122‑1 (MQ=255)                                     gatgaCATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTaa                                                                                                     <  3:347255/150‑1 (MQ=255)                                      atgaCATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTaaa                                                                                                    >  3:522712/1‑150 (MQ=255)                                        gaCATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTCGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAAc                                                                                                  <  4:781745/150‑1 (MQ=255)                                         aCATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACa                                                                                                 <  3:446253/150‑1 (MQ=255)                                          cATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAg                                                                                                >  1:647883/1‑150 (MQ=255)                                          cATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAg                                                                                                <  1:251196/150‑1 (MQ=255)                                            ttAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCa                                                                                              >  4:319082/1‑150 (MQ=255)                                              aGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAat                                                                                            <  4:695851/150‑1 (MQ=255)                                                  tAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAatgatg                                                                                        >  3:45163/1‑150 (MQ=255)                                                         tCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTtga                                                                                 <  2:904308/150‑1 (MQ=255)                                                           aCTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAg                                                                                                                         <  2:171399/108‑1 (MQ=255)                                                           aCTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAg                                                                                                                         >  1:171399/1‑108 (MQ=255)                                                            cTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTtgatga                                                                              >  2:361177/1‑150 (MQ=255)                                                             tAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGAc                                                                             <  3:268075/150‑1 (MQ=255)                                                              aaGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGAcc                                                                            <  2:448766/150‑1 (MQ=255)                                                                gTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCTTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTtgt                                                                                                                                 <  2:116839/95‑1 (MQ=255)                                                                gTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTAAGTTTCCTtgt                                                                                                                                 >  1:116839/1‑95 (MQ=255)                                                                    aTTTATATAGCATCTGCCCAGACACCTATTTCTAGCTATTACAGGAGCGTCCGACTGGTTCACCGGACGCACTTTAAGTACGTTTCCTTGTGTTTTAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTGTGCTGACCCGTTTa                                                                      >  4:578928/1‑150 (MQ=255)                                                                     tttATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTaa                                                                     <  4:481017/150‑1 (MQ=255)                                                                        atataGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCa                                                                  >  2:862886/1‑150 (MQ=255)                                                                        atataGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCa                                                                  <  2:733964/150‑1 (MQ=255)                                                                         tataGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAg                                                                 >  1:691239/1‑150 (MQ=255)                                                                           taGTATCTGCCCAGATACTTATTTATAGTTATTAAAGGTGCGTCCGACTGATTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGt                                                               >  4:314281/1‑150 (MQ=255)                                                                           taGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGt                                                               <  4:210221/150‑1 (MQ=255)                                                                           taGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGt                                                               >  4:752097/1‑150 (MQ=255)                                                                           taGTATCTGCACAGAGAGTTATAGATAGTTGTTAAAGGAGCGTCCGACTGGGTCACCGGACGCACCTTAAGTACGTTTCCTTGTATTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGAACCGTTTAATCAGGt                                                               >  4:314394/1‑150 (MQ=255)                                                                            aGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTa                                                              >  2:193686/1‑150 (MQ=255)                                                                             gTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTAt                                                             >  1:716565/1‑150 (MQ=255)                                                                              tATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATc                                                            >  4:293504/1‑150 (MQ=255)                                                                               aTCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCg                                                           >  2:594565/1‑150 (MQ=255)                                                                                  tGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCa                                                        >  3:289206/1‑150 (MQ=255)                                                                                  tGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCa                                                        >  3:289231/1‑150 (MQ=255)                                                                                    cccAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAAt                                                      >  4:302256/1‑150 (MQ=255)                                                                                    cccAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAAt                                                      >  1:129986/1‑150 (MQ=255)                                                                                     ccAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTCGTGTTATAAGAACAGAAGGATCAGCTGTaaaa                                                                                                   <  2:49326/104‑1 (MQ=255)                                                                                     ccAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTCGTGTTATAAGAACAGAAGGATCAGCTGTaaaa                                                                                                   >  1:49326/1‑104 (MQ=255)                                                                                       aGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAg                                                   >  2:752209/1‑150 (MQ=255)                                                                                             ttatttatAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGt                                                                         <  1:826822/122‑1 (MQ=255)                                                                                             ttatttatAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGt                                                                         >  2:826822/1‑122 (MQ=255)                                                                                               atttatAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGt                                           <  4:650867/150‑1 (MQ=255)                                                                                                   ataGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGttttt                                       >  2:163616/1‑150 (MQ=255)                                                                                                    taGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTc                                      <  3:97310/150‑1 (MQ=255)                                                                                                    taGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTc                                      <  2:303063/150‑1 (MQ=255)                                                                                                    taGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTc                                      <  3:319082/150‑1 (MQ=255)                                                                                                     aGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAatga                                                                                          >  1:313206/1‑97 (MQ=255)                                                                                                     aGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAatga                                                                                          <  2:313206/97‑1 (MQ=255)                                                                                                      gTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTACCGGCAAt                                                      >  2:509882/1‑132 (MQ=255)                                                                                                      gTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTACCGGCAAt                                                      <  1:509882/132‑1 (MQ=255)                                                                                                       ttattaAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCtt                                   <  4:45163/150‑1 (MQ=255)                                                                                                       ttattaAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGAGCGGCTGTAACACAGCAATGATGATTTTGATGACCCGGTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCtt                                   <  2:1241392/150‑1 (MQ=255)                                                                                                        tattaAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTa                                  <  2:614618/150‑1 (MQ=255)                                                                                                         attaAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACa                                                                                                 <  1:323480/86‑1 (MQ=255)                                                                                                         attaAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACa                                                                                                 >  2:323480/1‑86 (MQ=255)                                                                                                         attaAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTaa                                 <  4:522712/150‑1 (MQ=255)                                                                                                          ttaAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTaaa                                <  2:647883/150‑1 (MQ=255)                                                                                                             aaGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCg                                                           >  4:18500/1‑120 (MQ=255)                                                                                                             aaGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCg                                                           <  3:18500/120‑1 (MQ=255)                                                                                                              aGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAg                            <  1:594565/150‑1 (MQ=255)                                                                                                                gTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGa                          >  2:1200221/1‑150 (MQ=255)                                                                                                                 tGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGaa                         >  1:911697/1‑150 (MQ=255)                                                                                                                    gTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGc                      <  2:493511/150‑1 (MQ=255)                                                                                                                     tCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGCa                     <  4:24640/150‑1 (MQ=255)                                                                                                                     tCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGCa                     >  2:800866/1‑150 (MQ=255)                                                                                                                     tCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGCa                     >  3:414881/1‑150 (MQ=255)                                                                                                                        gACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGCAGcc                  >  1:1057578/1‑150 (MQ=255)                                                                                                                         aCTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGCAGCCa                 >  2:967904/1‑150 (MQ=255)                                                                                                                           tGGTTCACCGGACGCACCTTAAGTACGTTTCCTTTTTTTATAATAACAGAAGGATCAGCTTTAGAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGCAGCCAtt               <  1:1020930/150‑1 (MQ=255)                                                                                                                               tCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGAtt                                                                                     >  4:10157/1‑76 (MQ=255)                                                                                                                               tCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGAtt                                                                                     <  3:10157/76‑1 (MQ=255)                                                                                                                               tCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGCAGCCATTCAGa           <  2:99965/150‑1 (MQ=255)                                                                                                                                  ccGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTGAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGCAGCCATTCAGATTa        >  1:749833/1‑150 (MQ=255)                                                                                                                                  ccGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGt                                                                         >  2:691197/1‑85 (MQ=255)                                                                                                                                  ccGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGt                                                                         <  1:691197/85‑1 (MQ=255)                                                                                                                                    ggACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGCAGCCATTCAGATTAGc      <  1:455996/150‑1 (MQ=255)                                                                                                                                     gACGCACCTTAAGTACGTTTCCTTGTTTTATAAGAACAGAATGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGTTATCCGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGCAGCCATTCAAATTAGcc     <  1:1178036/150‑1 (MQ=255)                                                                                                                                        gCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGCAGCCATTCAGATTAGCCCtt  >  1:1228087/1‑150 (MQ=255)                                                                                                                                               |                                                                                                                                               ACTGGGAAGCCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGCAGCCATTCAGATTAGCCCTT  >  NC_000913_3_pae_pgi/2699958‑2700242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.