New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi 1096961 =138 (1.320)15 (0.220)
+GGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTT		 11/180 8.1 14.2% intergenic (+132/+604) ycdU/serX putative inner membrane protein/tRNA‑Ser
?NC_000913_3_pae_pgi 1097243 = NA (NA)intergenic (+414/+322) ycdU/serX putative inner membrane protein/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 138 total aligned reads displayed.

GGCATTTTAATAAGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA  >  NC_000913_3_pae_pgi/1096813‑1097109
                                                                                                                                                                 |                                                                                                                                                    
ggCATTTTAATAAGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑cc                                                                                                                                                     >  2:451002/1‑150 (MQ=255)
   aTTTTAATAAGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCgg                                                                                                                                                  <  4:346057/150‑1 (MQ=255)
    ttttAATAAGTTAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGTCTGAGTAACCAGACAGTTGATGTGCACGATTTTCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑ctctgt                                                                                                                                                 <  4:284237/150‑6 (MQ=255)
    ttttAATAAGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGgt                                                                                                                                                 >  1:485095/1‑150 (MQ=255)
    ttttAATAAGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGgt                                                                                                                                                 >  1:1053907/1‑150 (MQ=255)
    ttttAATAAGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTAATCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CGCGgt                                                                                                                                                 >  4:131940/1‑150 (MQ=255)
      ttAATAAGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGgtgt                                                                                                                                               <  3:201630/150‑1 (MQ=255)
          taaGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGc                                                                                                                                           >  2:881146/1‑150 (MQ=255)
           aaGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCa                                                                                                                                          >  1:794514/1‑150 (MQ=255)
            ggTGAGGAAGTGATAGGAAGTGACTAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGCGTCACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCaa                                                                                                                                         <  2:569721/149‑1 (MQ=255)
              tGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATGTTGATTGTTGGCGGAGGAATCAAGCAGCGCATGCGCACTAGTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGGGTGTGCAata                                                                                                                                       >  3:540268/1‑150 (MQ=255)
                aGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAAtata                                                                                                                                     >  1:212748/1‑150 (MQ=255)
                  gAAGTGATAGGAAGTGACCAGATAATACATATCTGTTCGGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACg                                                                                                                                   >  3:347765/1‑150 (MQ=255)
                       gATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGaaaaa                                                                                                                              >  4:484809/1‑150 (MQ=255)
                        aTAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAATAACAAGAAAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATAAGaaaaaa                                                                                                                             <  4:364214/150‑1 (MQ=255)
                           ggAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGAAATATAAAAAAAAAAAg                                                                                                                          <  4:554323/150‑1 (MQ=255)
                            gAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGc                                                                                                                         >  1:302126/1‑150 (MQ=255)
                             aaGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTAAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGcc                                                                                                                        <  1:939388/150‑1 (MQ=255)
                                   ccAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGCAAAAAAAGCCCGTACt                                                                                                                  >  4:39092/1‑150 (MQ=255)
                                    cAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACtt                                                                                                                 >  1:306088/1‑150 (MQ=255)
                                       ataataCATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCg                                                                                                              >  2:1033284/1‑150 (MQ=255)
                                           taCATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACg                                                                                                          >  2:986311/1‑150 (MQ=255)
                                           taCATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACg                                                                                                          >  3:440912/1‑150 (MQ=255)
                                              atataaGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGc                                                                                                       >  4:588743/1‑150 (MQ=255)
                                                atatGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGctc                                                                                                     >  1:853208/1‑150 (MQ=255)
                                                atatGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGctc                                                                                                     <  3:711951/150‑1 (MQ=255)
                                                    gTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCtcttct                                                                                                 <  4:568432/150‑1 (MQ=255)
                                                     ttCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAatat                                                                                                                                      >  2:1005562/1‑112 (MQ=255)
                                                     ttCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAatat                                                                                                                                      <  1:1005562/112‑1 (MQ=255)
                                                     ttCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTcttctt                                                                                                >  4:695760/1‑150 (MQ=255)
                                                     ttCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTcttctt                                                                                                >  2:571139/1‑150 (MQ=255)
                                                     ttCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTcttctt                                                                                                >  1:1116140/1‑150 (MQ=255)
                                                         gTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTaaa                                                                                            <  1:144459/150‑1 (MQ=255)
                                                         gTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGAAAAAAAAAAAAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTaaa                                                                                            <  2:1053907/150‑1 (MQ=38)
                                                          tACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGCCGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCGCTTCTTTAAat                                                                                           >  2:639130/1‑150 (MQ=255)
                                                           aCTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACATTTGATGTGAACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGCTGTGTGCAATATACGAAAAAAAAGCCCGTTCTTTCGTACGAGCTCTTCTTTAAata                                                                                          <  4:70051/150‑1 (MQ=255)
                                                            ctctctTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAatat                                                                                         <  4:440912/150‑1 (MQ=255)
                                                              ctctTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATgg                                                                                       <  1:1036817/150‑1 (MQ=255)
                                                              ctctTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATgg                                                                                       <  2:602833/150‑1 (MQ=255)
                                                               tctTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGc                                                                                      >  3:216867/1‑150 (MQ=255)
                                                                ctTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCg                                                                                     >  2:116185/1‑150 (MQ=255)
                                                                attGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCg                                                                                     <  3:131940/149‑1 (MQ=255)
                                                                 ttGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCgg                                                                                    >  2:907220/1‑150 (MQ=255)
                                                                   gcgcATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTg                                                                                  >  1:416724/1‑150 (MQ=255)
                                                                       aTTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGAGCGAAGCGAGTCAATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAat                                                                                           >  2:529796/1‑150 (MQ=9)
                                                                       aTTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggg                                                                              >  1:487555/1‑150 (MQ=255)
                                                                       aTTTTGATTGTTGACTCAGGAGTCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggg                                                                              <  1:300521/150‑1 (MQ=255)
                                                                          ttGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAgggggg                                                                           >  2:621345/1‑150 (MQ=255)
                                                                          ttGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGGAgggggg                                                                           >  1:1106695/1‑150 (MQ=255)
                                                                           tGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggggggg                                                                          >  1:688426/1‑150 (MQ=255)
                                                                             aTTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAt                                                                        <  2:306088/150‑1 (MQ=255)
                                                                                gttgACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATg                                                                                        >  1:107775/1‑131 (MQ=255)
                                                                                gttgACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATg                                                                                        <  2:107775/131‑1 (MQ=255)
                                                                                 ttgACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAACGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGAc                                                                    >  1:1091300/1‑150 (MQ=255)
                                                                                 ttgACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGAc                                                                    <  2:212748/150‑1 (MQ=255)
                                                                                    aCTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGAGtcg                                                                 >  2:251297/1‑150 (MQ=255)
                                                                                       gAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgctt                                                              <  1:116185/150‑1 (MQ=255)
                                                                                           aaCCAGACAGTTGATGTGCCCGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGCGTGTGCAATACACGAAAAAAAAGCCCCTACTTTCGTACGAGCCCTTCTTTAAATATGGCGGGGAGGGGGGGATTGCCtcgcttcgca                                                          >  3:53622/1‑149 (MQ=21)
                                                                                            aCCAGACAGTTGATGTGCACGGTTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑C‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTtcgctc                                                         <  4:505253/150‑1 (MQ=255)
                                                                                            aCCAGAAAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCA‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTtcgctc                                                         <  2:794514/150‑1 (MQ=255)
                                                                                             ccAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCaa                                                                                                                                         <  3:342037/69‑1 (MQ=255)
                                                                                              cAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTtcgctcgc                                                       >  4:170577/1‑150 (MQ=255)
                                                                                                    gTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCg                                                 <  1:589921/150‑1 (MQ=255)
                                                                                                     ttGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCGTTAAAGATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCgg                                                >  4:245766/1‑150 (MQ=255)
                                                                                                             cACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATgg                                                                                       >  1:425171/1‑103 (MQ=255)
                                                                                                             cACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATgg                                                                                       <  2:425171/103‑1 (MQ=255)
                                                                                                             cACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGa                                                                                 >  1:413998/1‑109 (MQ=255)
                                                                                                             cACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCg                                        >  1:990513/1‑150 (MQ=255)
                                                                                                             cACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCg                                        >  1:228647/1‑150 (MQ=255)
                                                                                                             cACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCg                                        >  1:661966/1‑150 (MQ=255)
                                                                                                             cACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCg                                        <  1:639130/150‑1 (MQ=255)
                                                                                                             cACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCg                                        >  4:487417/1‑150 (MQ=255)
                                                                                                              acaaattCCCCACACCCTAACAGACGAGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGGTCTTCTTTAAATATGGCGGTGAAGAGGGGATTGACTCGCTTCGCTCTCACTGAGGGCAGACCGc                                       >  2:882320/6‑150 (MQ=17)
                                                                                                                  cccgcccTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCAc                                   >  3:629434/5‑150 (MQ=255)
                                                                                                                      cccTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAatat                                                                                                                                      >  1:331779/1‑47 (MQ=255)
                                                                                                                      cccTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAatat                                                                                                                                      <  2:331779/47‑1 (MQ=255)
                                                                                                                       ccTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgcttc                                                             >  4:478601/1‑119 (MQ=255)
                                                                                                                       ccTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgcttc                                                             <  3:478601/119‑1 (MQ=255)
                                                                                                                        cTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGtt                             >  1:942576/1‑150 (MQ=255)
                                                                                                                        cTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGtt                             >  3:395390/1‑150 (MQ=255)
                                                                                                                        cTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGtt                             <  2:688426/150‑1 (MQ=255)
                                                                                                                            cccTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACg                         <  1:894689/150‑1 (MQ=255)
                                                                                                                              cTAACAGACGGGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGt                       <  2:722797/150‑1 (MQ=255)
                                                                                                                                aaCAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGTGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCt                     <  3:588743/150‑1 (MQ=255)
                                                                                                                                aaCAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCt                     <  2:1116140/150‑1 (MQ=255)
                                                                                                                                  cAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGt                   <  1:571139/150‑1 (MQ=255)
                                                                                                                                   aGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTc                  >  3:465721/1‑150 (MQ=255)
                                                                                                                                     aCGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGc                                <  1:403030/134‑1 (MQ=255)
                                                                                                                                     aCGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGc                                >  2:403030/1‑134 (MQ=255)
                                                                                                                                       gTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAAc              <  2:405776/150‑1 (MQ=40)
                                                                                                                                       gTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCATCGTTAAATCAGGCGGCTAGGGGCCGATTAACAAGTTCAACTCGCCCTGCCGGCAGCCCCCTCACAGAGTTCACGGTCTGTCCAAc              >  1:756687/1‑150 (MQ=14)
                                                                                                                                        tGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATAAGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACt             <  2:826318/150‑1 (MQ=255)
                                                                                                                                           gCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGc          >  1:987493/1‑150 (MQ=37)
                                                                                                                                           gCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGc          >  2:344401/1‑150 (MQ=37)
                                                                                                                                           gCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGc          >  4:526101/1‑150 (MQ=37)
                                                                                                                                                gg‑‑gC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGAAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTc                  <  4:241310/138‑1 (MQ=18)
                                                                                                                                                    gC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGGAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGc    <  4:446485/150‑1 (MQ=17)
                                                                                                                                                    gC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGc    <  2:661966/150‑1 (MQ=32)
                                                                                                                                                            a‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCa  <  3:170577/150‑1 (MQ=11)
                                                                                                                                                            a‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCa  <  2:228647/150‑1 (MQ=11)
                                                                                                                                                                 |                                                                                                                                                    
GGCATTTTAATAAGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCG‑GGG‑‑GC‑‑‑‑‑‑A‑‑‑‑CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCA  >  NC_000913_3_pae_pgi/1096813‑1097109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.