New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 1018982	125 (1.290)	29 (0.330)	21/238	6.0	20.1%	intergenic (+45/+31)	matP/ompA	Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d)
	?	NC_000913_3_pae_pgi	= 1018986	117 (1.320)					intergenic (+49/+27)	matP/ompA	Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d)
Rejected: Coverage evenness skew score above cutoff.

ACGCTTTCTGAAACGATTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_pgi/1018824‑1018982 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaccccgcTGCTGCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTTTCGTCAGTTATTCCTTACCCAGCAATGCCTGCAGATCCTGCTTCAGAGAAGACATTTTATTCGCGTATTTCTCTTTGTTTTCCGCATCTTCAATCAGCTGAACAAT  <  NC_000913_3_pae_pgi/1018986‑1018839                                                                                                                                                                                                                                                                                                                     ACGCTTTCTGAAACGATTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAA                                                                                                                                                               >  1:97655/1‑150  CGCTTTCTGAAACGATTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAA                                                                                                                                                              >  4:203217/1‑150   GCTTTCTGAAACGATTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAAAAAAAAAAA                                                                                                                                                             <  4:116716/150‑1     TTTCTGAAACGATTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAAC                                                                                                                                                           >  3:600908/1‑150       TCTGAAACGATTGTTCAGCTGATTGAAGATGTGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCC                                                                                                                                                         <  1:544493/150‑1       TCTGAAACGATTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCC                                                                                                                                                         >  4:627976/1‑150         TGAAACGATTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAAACAAAAAAAACCCCG                                                                                                                                                       <  2:113849/150‑1         TGAAACGATTGTTCAGCTGATTGAAGATGCGGAAAAAAAAGAAAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTAAAAAAAAAAAAAAAAACCCCG                                                                                                                                                       <  2:360488/150‑1          GAAACGATTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGC                                                                                                                                                      <  1:1011910/150‑1          GAAACGATTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGC                                                                                                                                                      >  2:268558/1‑150           AAACGATTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCT                                                                                                                                                     >  2:106834/1‑150                   GTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCTGCTGCGGG                                                                                                                                             <  1:106834/150‑1                    TTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCTGCTGCGGGG                                                                                                                                            >  4:84814/1‑150                             TTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCTGCTGCGGGGTTT                                                                                                                                         >  4:326607/1‑144                             TTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCTGCTGCGGGGTTT                                                                                                                                         <  3:326607/144‑1                                AAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAGAAAAACCCCGCTGCTGCGGGGTTTTTTTTGCCT                                                                                                                                >  3:187629/1‑150                                 AGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCTGCTGCGGGGTTTTTTTTGCCTT                                                                                                                               <  3:629439/150‑1                                   ATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCATTTTTGCAAAGTCAAAAAAAACCCCGCTGCTGCGGGGTTTTTTTTGCCTTTA                                                                                                                             <  3:18570/150‑1                                   ATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAGAAAAACCCCGCTGCTGCGGGGTTTTTTTTGCCTTTA                                                                                                                             <  4:187629/150‑1                                   ATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCTGCTGCGGGGTTTTTTTTGCCTTTA                                                                                                                             <  1:460871/150‑1                                   ATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCTGCTGCGGGGTTTTTTTTGCCTTTA                                                                                                                             <  1:461044/150‑1                                          AAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCTGCTGCGGGGTTTTTTTT                                                                                                                                    <  3:219564/136‑1                                          AAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCTGCTGCGGGGTTTTTTTT                                                                                                                                    >  4:219564/1‑136                                                        ACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCTGCTGCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTTTCGT                                                                                                        <  2:97655/150‑1                                                                             TGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCTGCTGCGGGGTTTTTTTT                                                                                                                                    >  2:663311/1‑101                                                                             TGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCTGCTGCGGGGTTTTTTTT                                                                                                                                    <  1:663311/101‑1                                                                                 GCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCTGCTGCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGA                                                                                                               <  2:483347/118‑1                                                                                 GCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCTGCTGCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGA                                                                                                               >  1:483347/1‑118                                                                                       TCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCTGCTGCGGGGTTTT                                                                                                                                        >  4:546426/1‑87                                                                                       TCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCTGCTGCGGGGTTTT                                                                                                                                        <  3:546426/87‑1                                                                                                       GGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCG                                                                                                                                                       <  3:398971/56‑1                                                                                                       GGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCG                                                                                                                                                       >  4:398971/1‑56                                                                                                              ttgAACTGACGAAAGTCTGTTCAATTTACTAAAGGCAAAAAAAACCCCGCTGCTGCGGGGTTTTTT                                                                                                                                      <  2:756609/63‑1                                                                                                              ttgAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGCTGCTGCGGGGTTTTTT                                                                                                                                      >  1:756609/4‑66                                                                                                                                 TTCAATTTACTAAAGGCAAAAAAAACCCCGCTGCTGCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTTTCGTCAGTTATTCCTTACCCAGCAATGCCTGCAGATCCTGCTTCAGAGA                                                           <  3:524889/122‑1                                                                                                                                 TTCAATTTACTAAAGGCAAAAAAAACCCCGCTGCTGCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTGTCGTCAGTTATTCCTTACCCAGCAATGCCTGCAGATCCTGCTTCAGAGA                                                           >  4:524889/1‑122                                                                                                                                            AAAGGCAAAAAAAACCCCGCTGCTGCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTTTCGTCAGTTATTCCTTACCCAGCAATGCCTGCAGATCCTGCTTCAGAGAAGACATTTTATTCGCGTATTTCTCTTTGTTTTCCGCATC                    >  4:600908/1‑150                                                                                                                                                   AAAAAAACCCCGCTGCTGCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTTTCGTCAGTTATTCCTTACCCAGCAATGCCTGCAGATCCTGCTTCAGAGAAGACATTTTATTCGCGTATTT                                      >  2:148444/1‑125                                                                                                                                                   AAAAAAACCCCGCTGCTGCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTTTCGTCAGTTATTCCTTACCCAGCAATGCCTGCAGATCCTGCTTCAGAGAAGACATTTTATTCGCGTATTT                                      <  1:148444/125‑1                                                                                                                                                   AAAAAAACCCCGCTGCTGCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTTTCGT                                                                                                        >  1:2630/1‑59                                                                                                                                                   AAAAAAACCCCGCTGCTGCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTTTCGT                                                                                                        <  2:2630/59‑1                                                                                                                                                     AAAAACCCCGCTGCTGCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTTTCGTCAGTTATTCCTTACCCAGCAATGCCTGCAGATCCTGCTTCAGAGAAGACATTTTATTCGCGTATTTCTCTTTGTTTTCCGCATCTTCAATCAG           <  2:645041/150‑1                                                                                                                                                              GCTGCTGCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTTTCGTCAGTTATTCCTTACCCAGCAATGCCTGCAGATCCTGCTTCAGAGAAGACATTTTATTCGC                                            >  1:273675/1‑108                                                                                                                                                              GCTGCTGCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTTTCGTCAGTTATTCCTTACCCAGCAATGCCTGCAGATCCTGCTTCAGAGAAGACATTTTATTCGC                                            <  2:273675/108‑1                                                                                                                                                              GCTGCTGCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGAAATTCGTCAGTTATTACGTACACAGCAATGCCTACAGATCCAGCTTCAGATGAGACATTTTATTCGCGTATATCTCTTTGTTTTCCGCAGCTGCAATCAGCTGAACAAT  >  3:521251/1‑150                                                                                                                                                                                                                                                                                                                     ACGCTTTCTGAAACGATTGTTCAGCTGATTGAAGATGCGGAAAACAAAGAGAAATACGCGAATAAAATGTCTTCTCTGAAGCAGGATCTGCAGGCATTGCTGGGTAAGGAATAACTGACGAAAGTCAGTTCAATTTACTAAAGGCAAAAAAAACCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_pgi/1018824‑1018982 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaccccgcTGCTGCGGGGTTTTTTTTGCCTTTAGTAAATTGAACTGACTTTCGTCAGTTATTCCTTACCCAGCAATGCCTGCAGATCCTGCTTCAGAGAAGACATTTTATTCGCGTATTTCTCTTTGTTTTCCGCATCTTCAATCAGCTGAACAAT  <  NC_000913_3_pae_pgi/1018986‑1018839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.