| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913_3_pae_pgi | 4,159,090 | C→T | R201C (CGC→TGC) | oxyR → | oxidative and nitrosative stress transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 4,159,090 | 0 | C | T | 97.9% | 322.8 / ‑2.3 | 93 | R201C (CGC→TGC) | oxyR | oxidative and nitrosative stress transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (48/43); total (49/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.12e-01 | |||||||||||
CGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTAC‑TGCCAGCGCTGGCTGTGCCGCCGGAGCG > NC_000913_3_pae_pgi/4158945‑4159235 | cGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGa > 1:700454/1‑150 (MQ=255) gAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGAt < 2:700454/150‑1 (MQ=255) cattGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAAt < 3:264615/150‑1 (MQ=255) aGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATTCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGttt > 1:256146/1‑150 (MQ=255) gTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTc > 4:610606/1‑150 (MQ=255) ccGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTTGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGt < 4:314082/150‑1 (MQ=255) ccGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGt > 2:992003/1‑150 (MQ=255) gttgttTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGttt < 3:234030/150‑1 (MQ=255) gttgttTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGttt < 3:372663/150‑1 (MQ=255) atgaGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCACTGGGTTTCTGTTTTGAAGCCg > 2:803938/1‑150 (MQ=255) tgaGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGAAATGGGTTTCTGTTTTGATGCCgg < 4:336033/150‑1 (MQ=255) tgaGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTAACGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgg > 3:680132/1‑150 (MQ=255) aGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg > 1:921978/1‑150 (MQ=255) gCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTgtgc < 3:571336/115‑1 (MQ=255) ccAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCATGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCt < 1:663045/133‑1 (MQ=255) ccAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCt > 2:663045/1‑133 (MQ=255) ccAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCg > 2:216374/1‑150 (MQ=255) cAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCgg > 3:614606/1‑150 (MQ=255) cAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCgg < 1:24537/150‑1 (MQ=255) gTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGa > 2:1078955/1‑150 (MQ=255) cTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGtttt > 4:108788/1‑129 (MQ=255) cTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGtttt < 3:108788/129‑1 (MQ=255) cTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGAt < 3:52538/150‑1 (MQ=255) tGGCTATCTATGAAGATCACCCGTGNGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGCTa > 3:544208/1‑150 (MQ=255) tGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATa > 1:806470/1‑150 (MQ=255) tGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATa > 2:1009104/1‑150 (MQ=255) gCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATaca > 1:158167/1‑150 (MQ=255) atctatGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATacacac > 2:1058737/1‑150 (MQ=255) tatGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAAt < 2:962845/107‑1 (MQ=255) tatGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAAt > 1:962845/1‑107 (MQ=255) tatGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCgg > 3:72937/1‑133 (MQ=255) tatGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCgg < 4:72937/133‑1 (MQ=255) atGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGttt > 4:155860/1‑112 (MQ=255) atGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGttt < 3:155860/112‑1 (MQ=255) tGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCcg > 1:1001200/1‑150 (MQ=255) tGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCcg > 2:280030/1‑150 (MQ=255) gAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGa < 2:907248/134‑1 (MQ=255) gAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGa > 1:907248/1‑134 (MQ=255) cccGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAg > 3:128807/1‑150 (MQ=255) ccGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGc > 1:77380/1‑150 (MQ=255) cGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGATGCCGGGGAGGATGAAg < 2:582786/126‑1 (MQ=255) cGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCGGGGGAGGATGAAg > 1:582786/1‑126 (MQ=255) ggCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGa < 4:148594/150‑1 (MQ=255) gCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGaa > 3:246451/1‑150 (MQ=255) ccGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAActct > 4:11114/1‑150 (MQ=255) cgcgAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCcgc < 2:576499/129‑1 (MQ=255) cgcgAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCcgc > 1:576499/1‑129 (MQ=255) cgcgAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTg > 2:647439/1‑150 (MQ=255) gcgAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTgc < 1:290416/150‑1 (MQ=255) cgAATGCGTACGGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGa < 2:707785/108‑1 (MQ=255) cgAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGa > 1:707785/1‑108 (MQ=255) tGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGTGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGAGCAGCCTGGAAACTCTGCGCAAc < 2:393179/150‑1 (MQ=255) tACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACAtgg > 4:601615/1‑150 (MQ=255) aCCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGa > 3:423777/1‑63 (MQ=255) aCCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGa < 4:423777/63‑1 (MQ=255) ccGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACAtggtg < 3:91453/150‑1 (MQ=255) cGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACAtggtgg < 1:1058737/150‑1 (MQ=255) gATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTggc < 3:204691/150‑1 (MQ=255) ggCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTggcggc > 1:762633/1‑150 (MQ=255) gCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCa > 1:958529/1‑150 (MQ=255) gCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCa > 4:25859/1‑150 (MQ=255) gttCTGGCGGGGGAAAAACTGCTGATGCTGGAAGATGGTCAGTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGACGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGt < 2:158167/148‑1 (MQ=255) aTCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTa < 2:958529/150‑1 (MQ=255) gCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCggg > 1:32379/1‑150 (MQ=255) cAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGa < 1:647439/150‑1 (MQ=255) aGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGAt < 3:11114/150‑1 (MQ=255) ggggAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCaa < 1:809284/125‑1 (MQ=255) ggggAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCaa > 2:809284/1‑125 (MQ=255) gAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACt < 3:495150/150‑1 (MQ=255) aaaaCTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACttt < 3:25859/150‑1 (MQ=255) aaCTGCTGATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTAc < 2:921978/150‑1 (MQ=255) tgctgATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTAC‑TGc < 1:280030/150‑1 (MQ=255) tgctgATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTAC‑TGc > 4:252909/1‑150 (MQ=255) gcggATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTAC‑TGcc < 4:680132/147‑1 (MQ=255) gATGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGAAACATGGTGGCGGCAGGTAGCGGGATCACTTTAC‑TGCCAgc > 1:804540/1‑150 (MQ=255) aTGCTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTAC‑TGCCAgcg > 4:500377/1‑150 (MQ=255) cTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGc < 3:173536/53‑1 (MQ=255) cTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGc > 4:173536/1‑53 (MQ=255) cTGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTAC‑TGCCAGCgctg < 2:77380/150‑1 (MQ=255) tGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTAC‑TGCCAGCgctgg < 1:875789/150‑1 (MQ=255) tGGAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTAC‑TGCCAGCgctgg < 1:120926/150‑1 (MQ=255) ggAAGATGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTAC‑TGCCAGCgctggc > 4:500535/1‑150 (MQ=255) aTGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTggcgg < 3:277596/111‑1 (MQ=255) aTGGTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTggcgg > 4:277596/1‑111 (MQ=255) ggTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTAC‑TGCCAGCGCTGGCTGTgccg < 4:128807/150‑1 (MQ=255) gTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGTGCGGATGAAGATACACACTTTCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTCGCGGGAGGACGGTGCGTGCC‑GCGTTGGCTGTgccgc > 2:335243/1‑150 (MQ=255) gTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTAC‑TGCCAGCGCTGGCTGTgccgc < 1:102650/150‑1 (MQ=255) gTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTAC‑TGCCAGCGCTGGCTGTgccgc > 2:557023/1‑150 (MQ=255) gTCACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTAC‑TGCCAGCGCTGGCTGTgccgc < 3:610606/150‑1 (MQ=255) tCACTGTTTGTGCGATCAGACAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTAC‑TGCCAGCGCTGGCtgt > 1:479397/1‑144 (MQ=255) tCACTGTTTGTGCGATCAGACAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTAC‑TGCCAGCGCTGGCtgt < 2:479397/144‑1 (MQ=255) cACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAg < 4:604418/113‑1 (MQ=255) cACTGTTTGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAg > 3:604418/1‑113 (MQ=255) tttGTGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTAC‑TGCCAGCGCTGGCTGTGCCGCCGGAgcg > 1:821891/1‑150 (MQ=255) | CGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTAC‑TGCCAGCGCTGGCTGTGCCGCCGGAGCG > NC_000913_3_pae_pgi/4158945‑4159235 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |