| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 2892692 | 19 (1.100) | 4 (0.240) | 4/260 | 1.8 | 17.7% | coding (36/1272 nt) | ygcN | putative oxidoreductase |
| ? | NC_000913_3_pae_pgi | = 2892701 | 19 (1.150) | coding (45/1272 nt) | ygcN | putative oxidoreductase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCAAAAATCTTTCCGGCGGGCGGTTATATACCCATGCACTCGCGGAACTCCTCCCGCAATTTC > NC_000913_3_pae_pgi/2892550‑2892840 | aCCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTg < 4:76660/150‑1 (MQ=255)aCCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTg > 2:61625/1‑150 (MQ=255) atcGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTgcgc < 2:63281/150‑1 (MQ=255) gATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTgcgc < 4:48553/150‑1 (MQ=255) tgtgtCGGTGGTGAATTACGCTTGAGTAACGTTATGTTAGGGTGTTGTGTTATGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGGGCGGGTATTGCAGGCTCCGCTTGCGTGTTACGCTGCGCGCGAGCgg < 2:42763/150‑1 (MQ=255) tgtCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGt > 4:40667/1‑150 (MQ=255) tCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGttt < 1:30788/150‑1 (MQ=255) gcggTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATc < 1:33747/150‑1 (MQ=255) tCAATTGCCCTTAATTAACGCTATGTTAGGGTTTTGTGTGCGTGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGtt < 2:187090/150‑1 (MQ=255) tttCCCTTAAGTAACGCTATGTTGGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGt > 2:188968/1‑150 (MQ=255) ttCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCtgcaataccggcaccaataataataatgtcgcagtcgtcttcca > 1:27667‑M1/1‑91 (MQ=255) ttCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCtgcaataccggcaccaataataataatgtcgcagtcgtcttcca < 2:27667‑M1/135‑45 (MQ=255) aaCGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGGTTATCCGTTTTGTTACTGTAAcgcg > 4:117289/1‑150 (MQ=255) ttCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTCCGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCaaaaa > 3:104811/1‑150 (MQ=255) ggATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCAAAAATCtt > 2:112983/1‑150 (MQ=255) tGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCAAAAATCTTTCcggcg > 4:10287/1‑150 (MQ=255) ggggCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGt < 3:119179/91‑1 (MQ=255) ggggCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGt > 4:119179/1‑91 (MQ=255) ggCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTCTTGCAGGCCACGATTGAGCGTTACGATGCGCGCGAGCGGTTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCAAAAATCTTTCCggcgggc < 3:117289/150‑1 (MQ=255) cATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCAAAAATCTTTCCGgcgggcgg < 1:61625/150‑1 (MQ=255) gACATGGAAGACGACTGCGACATTATTATTATTGGTGCCtgcaataccggcac < 3:116121‑M1/53‑15 (MQ=255) gACATGGAAGACGACTGCGACATTATTATTATTGGTGCCtgcaataccggcac > 4:116121‑M1/1‑39 (MQ=255) tGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAggcaccaataataataatgtcgcagtcgtcttccatgtcatgccccagatatccagaacacaacaccctaacatagcgttacttaagggaa < 2:27667‑M2/135‑92 (MQ=255) tGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAggcaccaataataataatgtcgcagtcgtcttccatgtcatgccccagatatccagaacacaacaccctaacatagcgttacttaagggaa > 1:27667‑M2/1‑44 (MQ=255) gTGCCGGTATTGCAggcaccaataataataatgtcgcagtcgtcttccatgtc < 3:116121‑M2/53‑40 (MQ=255) gTGCCGGTATTGCAggcaccaataataataatgtcgcagtcgtcttccatgtc > 4:116121‑M2/1‑14 (MQ=255) ccGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCAAAAATCTTTCCGGCGGGCGGTTATATACCCATGCACTCGCGGAACTCCTCCCGCAATTTc < 1:112983/150‑1 (MQ=255) | ACCGCAGGTTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCCTTAAGTAACGCTATGTTAGGGTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCACCGCTTGCGCGTTACGCTGCGCGCGAGCGGGTTTATCCGTTTTGTTACTGGAACGCGCTGAAATCCCCGGCAGCAAAAATCTTTCCGGCGGGCGGTTATATACCCATGCACTCGCGGAACTCCTCCCGCAATTTC > NC_000913_3_pae_pgi/2892550‑2892840 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |