| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 2641725 | 16 (0.920) | 4 (0.250) | 4/256 | 1.8 | 20.0% | coding (80/1119 nt) | ispG | 1‑hydroxy‑2‑methyl‑2‑(E)‑butenyl 4‑diphosphate synthase |
| ? | NC_000913_3_pae_pgi | = 2641730 | 17 (1.040) | coding (75/1119 nt) | ispG | 1‑hydroxy‑2‑methyl‑2‑(E)‑butenyl 4‑diphosphate synthase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGAACGCTTCTGCCGCGTCCATCGTCGGTACGGATACACGGACGATATCAGCGCCAACGCGTTCCAGCGCCTTGATTTGATTGACCGTTGCTTCGACGTCTGTCGTACGCGTATTGGTCATGGACTGTACGGCGATGGGAGCACCATCGCCAATCGGCACATTCCCAACGTAAATACGTGTTGATTTTCTACGTTGAATTGGAGCCTGGTTATGCATGAAAAATCTCCCGCGTTACCCGTCTGTTACTGCGCCGGTGATTGTTCGGCATTGAGGGTCAGACGCGCAAC > NC_000913_3_pae_pgi/2641588‑2641875 | tGAACGCTTCTGCCGCGTCCATCGACGGTACGGATACACGGACGATATCAGCGCCACCGCGTTCCAGCGCCTTGATTTGATTGACCGTTGCTTCGACGTCTGTCGTACGCGTATTGGTCATGGACTGTACGGCGATGGGAGCAccatcgc > 3:88436‑M2/1‑143 (MQ=255) gAACGCTTCTGCCGCGTCCATCGTCGGTACGGATACACGGACGATATCAGCGCCAACGCGTTCCAGCGCCTTGATTTGATTGACCGTTGCTTCGACGTCTGTCGTACGCGTATTGGTCATGGACTGTACGGCGATGGGAGCAccatcgcc < 1:93191‑M2/150‑9 (MQ=255) ttCTGCCGCGTCCATCGTCGGTACGGATACACGGACGATATCAGCGCCAACGCGTTCCAGCGCCTTGATTTGATTGACCGTTGCTTCGACGTCTGTCGTACGCGTATTGGTCATGGACTGTACGGCGATGGGAGCACCATCGCCa > 4:66668/1‑145 (MQ=255) ttCTGCCGCGTCCATCGTCGGTACGGATACACGGACGATATCAGCGCCAACGCGTTCCAGCGCCTTGATTTGATTGACCGTTGCTTCGACGTCTGTCGTACGCGTATTGGTCATGGACTGTACGGCGATGGGAGCACCATCGCCa < 3:66668/145‑1 (MQ=255) ttCTGCCGCGTCCATCGTCGGTACGGATACACGGACGATATCAGCGCCAACGCGTTCCAGCGCCTTGATTTGATTGACCGTTGCTTCGACGTCTGTCGTACGCGTATTGGTCATGGACTGTACGGCGATGGGAGCACCATCGCCAATCgg < 3:10534/150‑1 (MQ=255) tcgtcgGTACGGATACACGGACGATATCAGCGCCAACGCGTTCCAGCGCCTTGATTTGATTGACCGTTGCTTCGACGTCTGTCGTACGCGTATTGGTCATGGACTGTACGGCGATGGGAGCACCATCGCCAATCGGCACATTCCCAACGt > 2:15156/1‑150 (MQ=255) gTACGGATACACGGACGATATCAGCGCCAACGCGTTCCAGCGCCTTGATTTGATTGACCGTTGCTTCGACGTCTGTCGTACGCGTATTGGTCATGGACTGTACGGCGATGGGAGCACCATCGCCAATCGGCACATTCCCAACGTAAATAc > 1:120969/1‑150 (MQ=255) cGGACGATATCAGCGCCAACGCGTTCCAGCGCCTTGATTTGATTGACCGTTGCTTCGACGTCTGTCGTACGCGTATTGGTCATGGACTGTACGGCGATGGGAGCACCATCGCCAATCGGCACATTCCCAACGTAAATACGTGTTGAtttt < 4:76979/150‑1 (MQ=255) ttgatttgatTGACCGTTGCTTCGACGTCTGTCGTACGCGTATTGGTCATGGACTGTACGGCGATGGGAGCACCATCGCCAATCGGCACATTCCCAACGTAAATACGTGTTGATTTTCTACGTTGAATTGGAGCCTGGTTATGCATGaaa < 2:120969/150‑1 (MQ=255) ttgaCCGTTGCTTCGACGTCTGTCGTACGCGTATTGGTCATGGACTGTACGGCGATGGGAGCACCATCGCCAATCGGCACATTCCCAACGTAAATACGTGTTGATTTTCTACGTTGAATTGGAGCCTGGTTATGCATGAAAAATCTCCcg > 3:91394/1‑150 (MQ=255) gTTGCTTCGACGTCTGTCGTACGCGTATTGGTCATGGACTGTACGGCGATGGGAGCACCATCGCCAATCGGCACATTCCCAACGTAAATACGTGTTGATTTTCTACGTTGAATTGGAGCCTGGTTATGCATGAAAAATCTCCCGCGTTAc < 1:92981/150‑1 (MQ=255) gTACGCGTATTGGTCATGGACTGTACGGCGATGGGAGCAccatcgccgtacagtccatgaccaatacgcgtacgacagacgtcgaagcaacggtcaatcaaatcaaggcgctggaacgcgttggcgctgatatcgtccgtgtatccgtac < 1:190493‑M2/150‑112 (MQ=255) tACGCGTATTGGTCATGGACTGTACGGCGATGGGAGCACCATCGCCAATCGGCACATTCCCAACGTAAATACGTGTTGATTTTCTACGTTGAATTGGAGCCTGGTTATGCATGAAAAATCTCCCGCGTTACCCGTCTGTTACTGCGCCgg > 1:8600/1‑150 (MQ=255) gcgTATTGGTCATGGACTGTACAGCGATGGGAGCACCATCGCCAATCGGCACATTCCCAACGTAAATACGTGTTGATTTTCTACGTTGAAt > 2:4821/1‑91 (MQ=255) gcgTATTGGTCATGGACTGTACAGCGATGGGAGCACCATCGCCAATCGGCACATTCCCAACGTAAATACGTGTTGATTTTCTACGTTGAAt < 1:4821/91‑1 (MQ=255) gTATTGGTCATGGACTGTACGGCGATGGGAGCACCATCGCCAATCGGCACATTCCCAACGTAAATACGTGTTGATTTTCTACGTTGAATTGGAGCCTGGTTATGCATGAAAAATCTCCCGCGTTACCCGTCTGTTACTGCGCCGGTGAtt > 1:169119/1‑150 (MQ=255) tGGTCATGGACTGTACGGCGATGGGAGCACCATCGCCAATCGGCACATTCCCAACGTAAATACGTGTTGATTTTCTACGTTGAATTGGAGCCTGGTTATGCATGAAAAATCTCCCGCGTTACCCGTCTGTTACTGCGCCGGTGATTGTTc < 1:15156/150‑1 (MQ=255) ggTCATGGACTGTACGGCGATGGGAGCAccatcgccgtatagtccatgaccaatacgcgtacgacagacgtcgaagcaa > 2:16020‑M2/1‑28 (MQ=255) ggTCATGGACTGTACGGCGATGGGAGCAccatcgccgtatagtccatgaccaatacgcgtacgacagacgtcgaagcaa < 1:16020‑M2/79‑52 (MQ=255) ccTGTACGGCGATGGGAGCAACATAGCAAATCGGAACATCCCCAACGTCAATACGTGTTGATTTTCTACGTTGAATTGGAGCCTGGTTATGTATGAAAAATCTCCCGCGTTACCCGTCTGTTACTGCGACGGCAATTGTTCTGCATTGAg > 2:139217/2‑150 (MQ=255) tACGGCGATGGGAGCAccatcgccgtacagtccatgaccaatacgcgtacgacagacgtcgaagcaacggtcaatcaaatcaaggcgctggaacgcgttggcgctgatatcgtccgtgtatccgtaccgacgatggacgcggcagaagcg < 2:183386‑M2/150‑135 (MQ=255) tACGGCGATGGGAGCACCATCGCCAATCGGCACATTCCCAACGTAAATACGTGTTGATTTTCTACGTTGAATTGGAGCCTGGTTATGCATGAAAAATCTCCCGCGTTACCCGTCTGTTACTGCGCCGGTGATTGTTCGGCATTGAGGGTc > 3:51361/1‑150 (MQ=255) gAGCACCATCGCCAATCGGCACATTCCCAACGTAAATACGTGACGATTTTCTACGTTGAATTGGAGCCTGGTTATGCATGAAAAATCTCCCGCGTTACCCGTCTGTTACTGCGCCGGTGATTGTTCGGCATTGAGGGTCAGACGCGCAAc > 3:72305/1‑150 (MQ=255) | TGAACGCTTCTGCCGCGTCCATCGTCGGTACGGATACACGGACGATATCAGCGCCAACGCGTTCCAGCGCCTTGATTTGATTGACCGTTGCTTCGACGTCTGTCGTACGCGTATTGGTCATGGACTGTACGGCGATGGGAGCACCATCGCCAATCGGCACATTCCCAACGTAAATACGTGTTGATTTTCTACGTTGAATTGGAGCCTGGTTATGCATGAAAAATCTCCCGCGTTACCCGTCTGTTACTGCGCCGGTGATTGTTCGGCATTGAGGGTCAGACGCGCAAC > NC_000913_3_pae_pgi/2641588‑2641875 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |