New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 4124709	13 (0.750)	4 (0.240)	3/258	2.1	22.7%	coding (2102/2199 nt)	priA	Primosome factor n' (replication factor Y)
	?	NC_000913_3_pae_pgi	= 4124729	15 (0.910)					coding (2082/2199 nt)	priA	Primosome factor n' (replication factor Y)
Rejected: Coverage evenness skew score above cutoff.

ATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGTTGTTGCAGGAACAATGGCGCGTGCTGAT  >  NC_000913_3_pae_pgi/4124581‑4124874                                                                                                                                                     |                                                                                                                                                  aTTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGtgct                                                                                                                                                  <  2:89002/150‑1 (MQ=255)                            cGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGAc                                                                                                                       <  4:109235/150‑1 (MQ=255)                              gTTTAACCCTCTATCGGATCAAGATCCAGCACCCATTGCACCTTACGGGAATCCGGTAGTGTATTGAGGAGCGCAAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCg                                                                                                                     <  2:162158/150‑1 (MQ=255)                                      cTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGGTGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGttt                                                                                                             >  4:67047/1‑150 (MQ=255)                                                   aCATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGcc                                                                                                <  4:6477/150‑1 (MQ=255)                                                                    cACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAAc                                                                               <  4:39501/150‑1 (MQ=255)                                                                              gAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGCACCGGACCGAGAAACCACAGTTtc                                                                     >  4:86787/1‑150 (MQ=255)                                                                                      tattgtattgATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGc                                                             <  2:49677/150‑1 (MQ=255)                                                                                                atgaGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTgc                                                                                                                                    >  3:108875/1‑69 (MQ=255)                                                                                                atgaGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTgc                                                                                                                                    <  4:108875/69‑1 (MQ=255)                                                                                                     cgcCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGagag                                              >  3:64792/1‑150 (MQ=255)                                                                                                                          gtgtTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGttgttg                         <  4:64792/150‑1 (MQ=255)                                                                                                                                    cgcACGCGGGAAGGGTGCTGCAACAATATCTgccagcgcc                                                                                                                             >  3:53186/1‑40 (MQ=255)                                                                                                                                    cgcACGCGGGAAGGGTGCTGCAACAATATCTgccagcgcc                                                                                                                             <  4:53186/40‑1 (MQ=255)                                                                                                                                           gggAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGTTGTTGCAGGAACAATGGCGCGt        >  2:115111/1‑150 (MQ=255)                                                                                                                                                 ggTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGTTGTTGCAGGAACAATGGCGCGTGCTGAt  >  4:90839/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                  ATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGCCAGCGCCAGCGACCGCCACGTTTAGGTGCCAGAGCCGGAACCGGACCGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGTTGTTGCAGGAACAATGGCGCGTGCTGAT  >  NC_000913_3_pae_pgi/4124581‑4124874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.