New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi 3549918 =169 (1.280)21 (0.170) 20/234 10.6 11.8% coding (153/2085 nt) malQ 4‑alpha‑glucanotransferase (amylomaltase)
?NC_000913_3_pae_pgi 3549940 = 158 (1.290)coding (131/2085 nt) malQ 4‑alpha‑glucanotransferase (amylomaltase)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 175 total aligned reads displayed.

TAGATTGAACGCTTTGCCCCCCGTTACATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGACGTTTGCTTTC  >  NC_000913_3_pae_pgi/3549771‑3550067
                                                                                                                                                    |                                                                                                                                                     
tAGATTGAACGCTTTGCCCCCCGTTACATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTAc                                                                                                                                                     >  3:571269/1‑150 (MQ=255)
   aTTGAACGCTTTGCCCCCCGTTACATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGc                                                                                                                                                  >  4:822297/1‑150 (MQ=255)
   aTTGAACGCTTTGCCCCCCGTTACATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTAGGGACTGGCGTTACCGc                                                                                                                                                  >  1:1184102/1‑150 (MQ=255)
      gAACGCTTTGCCCCCCGTTACATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCAc                                                                                                                                               >  4:135076/1‑150 (MQ=255)
       aaCGCTTTGCCCCCCGTTACATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACt                                                                                                                                              >  2:1063416/1‑150 (MQ=255)
       aaCGCTTTGCCCCCCGTTACATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACAGCCACt                                                                                                                                              >  3:316902/1‑150 (MQ=255)
            tttGCCCCCCGTTACATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGt                                                                                                                                         >  4:357921/1‑150 (MQ=255)
               gCCCCCCGTTACATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTgg                                                                                                                                       >  1:916692/1‑150 (MQ=255)
                 cccccGTTACATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCgg                                                                                                                                    <  2:1563195/150‑1 (MQ=255)
                  ccccGTTACATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGt                                                                                                                                   >  1:105398/1‑150 (MQ=255)
                       ttACATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGtt                                                                                                                              <  1:437689/150‑1 (MQ=255)
                         aCATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGa                                                                                                                            >  3:399044/1‑150 (MQ=255)
                          cATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGa                                                                                                                            <  3:520548/149‑1 (MQ=255)
                           aTGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATg                                                                                                                          >  4:840141/1‑150 (MQ=255)
                               ccTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATc                                                                                                                      >  1:287163/1‑150 (MQ=255)
                                cTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCATTTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATc                                                                                                                      <  2:916692/150‑1 (MQ=255)
                                 tttGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGtt                                                                                                                              <  1:1103950/140‑1 (MQ=255)
                                 tttGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGtt                                                                                                                              >  2:1103950/1‑140 (MQ=255)
                                   tGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGCCATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGt                                                                                                                  <  2:741728/150‑1 (MQ=255)
                                      aCTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCaa                                                                                                               <  4:316902/150‑1 (MQ=255)
                                      aCTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCaa                                                                                                               <  3:357921/150‑1 (MQ=255)
                                           gTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCAc                                                                                                                                               <  1:843419/113‑1 (MQ=255)
                                           gTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCAc                                                                                                                                               >  2:843419/1‑113 (MQ=255)
                                           gTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGtt                                                                                                                              <  2:858777/130‑1 (MQ=255)
                                           gTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTAGCGTTACCGCCACTTTCGTGGCGGTACGtt                                                                                                                              >  1:858777/1‑130 (MQ=255)
                                            ttCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAAc                                                                                                         >  2:1005885/1‑150 (MQ=255)
                                               cttcttCGGTGGTCAGCAACCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCAACAAGTCAAGCAAACGcc                                                                                                      >  2:1039275/1‑150 (MQ=255)
                                                ttcttcGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGtt                                                                                                                              >  1:273053/1‑125 (MQ=255)
                                                ttcttcGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGtt                                                                                                                              <  2:273053/125‑1 (MQ=255)
                                                ttcttcGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATcgc                                                                                                                    <  2:1489965/135‑1 (MQ=255)
                                                ttcttcGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATcgc                                                                                                                    >  1:1489965/1‑135 (MQ=255)
                                                ttcttcGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCg                                                                                                     >  2:34089/1‑150 (MQ=255)
                                                ttcttcGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGATACGTTGATGCATCGCGTCAAGCAAACGCCg                                                                                                     >  2:1532547/1‑150 (MQ=255)
                                                     cGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCg                                                                                                     >  1:1173903/1‑145 (MQ=255)
                                                     cGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCg                                                                                                     <  2:1173903/145‑1 (MQ=255)
                                                     cGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTgg                                                                                                >  2:1463331/1‑150 (MQ=255)
                                                        tggtCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGttt                                                                                             <  1:1005885/150‑1 (MQ=255)
                                                        tggtCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGttt                                                                                             >  3:466939/1‑150 (MQ=255)
                                                          gtCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGGCAAGCAAACGCCGTGTGGTTTCg                                                                                           >  3:731585/1‑150 (MQ=255)
                                                             agcagcCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGATTGGTTTCGgcg                                                                                        >  3:857598/1‑150 (MQ=255)
                                                              gcagcCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGgcgc                                                                                       <  4:106822/150‑1 (MQ=255)
                                                                agccagcTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTa                                                                                     >  1:1370725/1‑150 (MQ=255)
                                                                  ccagcTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAAt                                                                                   >  1:597034/1‑150 (MQ=255)
                                                                     gcTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGa                                                                                <  3:822297/150‑1 (MQ=255)
                                                                       tataTTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTAc                                                                                                                                                     >  1:754758/1‑79 (MQ=255)
                                                                       tataTTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTAc                                                                                                                                                     <  2:754758/79‑1 (MQ=255)
                                                                         tatTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGc                                                                            >  3:947853/1‑150 (MQ=255)
                                                                           ttCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGc                                                                                                                                      <  4:234425/90‑1 (MQ=255)
                                                                           ttCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGc                                                                                                                                      >  3:234425/1‑90 (MQ=255)
                                                                           ttCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAAt                                                                                   >  1:446051/1‑141 (MQ=255)
                                                                           ttCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCgg                                                                          >  2:977833/1‑150 (MQ=255)
                                                                           ttCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCgg                                                                          >  1:1091373/1‑150 (MQ=255)
                                                                            tCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACg                                                                                                                                >  4:940445/1‑95 (MQ=255)
                                                                              gccgcTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGcc                                                                                                                                                 <  2:1383092/76‑1 (MQ=255)
                                                                              gccgcTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCATTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGttt                                                                       >  4:211154/1‑150 (MQ=255)
                                                                               ccgcTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCaa                                                                                                               >  4:525339/1‑109 (MQ=255)
                                                                                    gCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTg                                                                 >  2:438548/1‑150 (MQ=255)
                                                                                      ccTCCACCACCATCGGCA‑TTTTTTTTTTTTTTTTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTggg                                                               >  4:738925/1‑150 (MQ=255)
                                                                                         ccaccaccaTCGGCA‑TTTTTTTGTCTTTGGTATAAACCATGACATTCGGGACTGGTGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCAt                                                            >  4:28650/1‑150 (MQ=255)
                                                                                          caccaccaTCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCAtt                                                           >  4:644607/1‑150 (MQ=255)
                                                                                             caccaTCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGAt                                                        <  1:1532547/150‑1 (MQ=255)
                                                                                               ccaTCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGt                                                      <  4:399044/150‑1 (MQ=255)
                                                                                                caTCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGttt                                                                                                  <  3:650741/105‑1 (MQ=255)
                                                                                                    ggCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGGTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTg                                                 >  1:1578278/1‑150 (MQ=255)
                                                                                                     gCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCTTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTgg                                                <  1:102991/150‑1 (MQ=255)
                                                                                                     gCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTc                                                                                                                 <  3:939604/85‑1 (MQ=255)
                                                                                                     gCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTc                                                                                            <  2:904976/106‑1 (MQ=255)
                                                                                                     gCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTgg                                                >  2:416303/1‑150 (MQ=255)
                                                                                                      cA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTAGTTTCGACACTAATCGCCAGCGGATTACAGGAGGCAATGATGTAAtgcgg                                               >  2:547106/1‑146 (MQ=255)
                                                                                                       a‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCt                                                                                      >  3:814348/1‑110 (MQ=255)
                                                                                                           tttttGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTa                                           >  1:86707/1‑150 (MQ=255)
                                                                                                               tGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATcc                                       >  4:935180/1‑150 (MQ=255)
                                                                                                                 ccGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATcccc                                     <  3:211154/150‑1 (MQ=255)
                                                                                                                   gCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTc                                                                                            <  1:1130850/93‑1 (MQ=255)
                                                                                                                   gCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTc                                                                                            >  2:1130850/1‑93 (MQ=255)
                                                                                                                   gCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCccgc                                   >  4:519095/1‑150 (MQ=255)
                                                                                                                   gCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCccgc                                   >  2:60904/1‑150 (MQ=255)
                                                                                                                   gCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTGGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCccgc                                   >  1:565486/1‑150 (MQ=255)
                                                                                                                       gTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGttt                                                                                                  <  2:456013/83‑1 (MQ=255)
                                                                                                                       gTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGt                                                                                                    <  1:1470689/81‑1 (MQ=255)
                                                                                                                       gTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCgccgcc                               <  1:416303/150‑1 (MQ=255)
                                                                                                                        tataAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTgg                                                <  2:1296185/132‑1 (MQ=255)
                                                                                                                        tataAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTgg                                                >  1:1296185/1‑132 (MQ=255)
                                                                                                                        tataAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCa                              >  1:889589/1‑150 (MQ=255)
                                                                                                                          taAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAgc                            >  4:636085/1‑150 (MQ=255)
                                                                                                                               cATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGc                       <  1:1011962/150‑1 (MQ=255)
                                                                                                                                  gACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTg                                                                                                 >  3:750153/1‑73 (MQ=255)
                                                                                                                                      ttCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATc                                                                                                                      >  2:1103892/1‑48 (MQ=255)
                                                                                                                                       tCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCgg                        >  4:785609/1‑141 (MQ=255)
                                                                                                                                       tCGGGACTGCCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCa               >  1:1091752/1‑150 (MQ=255)
                                                                                                                                          ggACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGAc            >  3:306610/1‑150 (MQ=255)
                                                                                                                                          ggACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCACCAGCGCGGCATTATCCAGAc            >  1:255934/1‑150 (MQ=255)
                                                                                                                                           gACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCgg                        <  2:1313101/137‑1 (MQ=255)
                                                                                                                                             cTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGACGtt         <  1:60904/150‑1 (MQ=255)
                                                                                                                                              tGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGACGttt        <  4:582182/150‑1 (MQ=255)
                                                                                                                                               ggCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGACGTTTg       <  1:538521/150‑1 (MQ=255)
                                                                                                                                                gCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGACGTTTGc      <  2:889589/150‑1 (MQ=255)
                                                                                                                                                   ttACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGACGTTTGCttt   <  1:977833/150‑1 (MQ=255)
                                                                                                                                                    tACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGACGTTTGCTTTc  >  2:81350/1‑150 (MQ=255)
                                                                                                                                                    tACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGACGTTTGCTTTc  <  3:644607/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
TAGATTGAACGCTTTGCCCCCCGTTACATGGCCTTTGTACTGCGTTCCTTCTTCGGTGGTCAGCAGCCAGCTATATTCGCCGCTGCCCTCCACCACCATCGGCA‑TTTTTTTGCCGCTGGTATAAACCATGACATTCGGGACTGGCGTTACCGCCACTTTCGTGGCGGTACGTTGATGCATCGCGTCAAGCAAACGCCGTTTGGTTTCGGCGCTAATCGACTGCGGTTTACCGTGGGCATTGATGTAATTGGGGCTAATCCCCGCCGCCAGCGCGGCATTATCCAGACGTTTGCTTTC  >  NC_000913_3_pae_pgi/3549771‑3550067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.