New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 4040683	82 (0.890)	22 (0.240)	7/278	11.6	21.9%	intergenic (+47/+223)	rrfA/mobB	5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
	?	NC_000913_3_pae_pgi	= 4213162	76 (0.840)					intergenic (+3/‑72)	rrfE/yjaA	5S ribosomal RNA of rrnE operon/stress‑induced protein
Rejected: Coverage evenness skew score above cutoff.

AAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGG  >  NC_000913_3_pae_pgi/4213017‑4213310                                                                                                                                                   |                                                                                                                                                     aaGCGGTCTGATAAAGCAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGCGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAAtt                                                                                                                                                   <  2:403413/149‑1 (MQ=11) aaGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCACGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAAtt                                                                                                                                                   <  2:994113/149‑1 (MQ=11)   ggggTCTGATAAATAGGAATTTGCGTGGCGGTAGTAGCGCGGTGGTTCCACCTGGCCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCTGAGGGTAG‑TGTGGGGTTTCCCCGTGCGAGAGTCGGGAACTGCCAGGCAAAAAATTaa                                                                                                                                                 <  2:278536/147‑2 (MQ=11)     ggTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGGCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGaa                                                                                                                                               >  2:1022402/1‑149 (MQ=18)       tCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGaaaa                                                                                                                                             <  2:24071/149‑1 (MQ=35)       tCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTAAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCACATTAGaaaa                                                                                                                                             >  2:628676/1‑149 (MQ=25)           aTAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAAccc                                                                                                                                         <  1:690716/149‑1 (MQ=38)             aaaaCAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCGGGCATCAAATTAGAAAAACCCCg                                                                                                                                       >  2:939671/1‑149 (MQ=255)               aaCAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGt                                                                                                                                     >  1:587515/1‑149 (MQ=255)               aaCAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGt                                                                                                                                     >  2:927648/1‑149 (MQ=255)                aCAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCAAGGCATCACATTCGAAAAACCCCGGTc                                                                                                                                    >  2:688981/1‑149 (MQ=255)                     aTTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATaa                                                                                                                               <  2:587515/149‑1 (MQ=255)                          ccTGGTGGGAGGAGCGCGGCTCACCCACCCGACTCCATGCCGAACGCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATAAAAATAAAAAAACCCCGGTCCATAAGGCCg                                                                                                                          <  2:1535050/149‑1 (MQ=14)                          ccTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCg                                                                                                                          <  1:808945/149‑1 (MQ=255)                          ccTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGCAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCg                                                                                                                          <  1:1416598/149‑1 (MQ=255)                            tGGCGGCAGTAGCGCGGGGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCggg                                                                                                                        <  2:1022521/149‑1 (MQ=255)                               cggcAGTAGCGCGGTGGTCCCACCTCACCCCATGCCGAACCCAGAAGTCAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCCCCCCATGCGAGAGTAGGGAACTGACAGCCATTATAGTAGAAAAACCCCGGTCCATAAGGCCGGGGtt                                                                                                                     <  1:1589945/149‑1 (MQ=17)                                                  ccACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTAttt                                                                                                  <  2:284556/149‑1 (MQ=255)                                                   gcccTGACGCCCAGCCGAACTTAGAAGTGAAACGCCGTAGCGCCGATGGCAG‑TGTGGGGTCTCCCCATGCGAAAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTg                                                                                                 <  2:409576/147‑1 (MQ=21)                                                    aCCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGc                                                                                                >  1:914260/1‑149 (MQ=255)                                                    aCCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGc                                                                                                >  2:421169/1‑149 (MQ=255)                                                           cccATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCAtgatga                                                                                         >  1:929292/1‑149 (MQ=255)                                                           cccACGCCGAACTTAGAAGTGAAACGCCGTAGCGCCGATGCTGG‑TGTGGTGTCTCCCCATGCGAGAGTAGGGAACTGACAGGCCACTAATTAGAGACTGCTCGGTCCATAAGGCCGGGGTTTTTTGCATCTCAATTATTTGCAtgatga                                                                                         <  2:185469/149‑1 (MQ=18)                                                            ccATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGaa                                                                                        >  2:653838/1‑149 (MQ=255)                                                            ccATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTACATGATGaa                                                                                        >  2:999228/1‑149 (MQ=255)                                                             cATGCCGAAGTCAGAAGTGAAGAACTGTAAAGGCGA‑AGTAGATATGGGGTATCCCCATGTGAGATTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAACTATTTGCATGATGaat                                                                                       >  1:389841/1‑148 (MQ=21)                                                             cATGCCGAACTCAGAAGTGAAACGCCGTAGCGCGGATGGTAG‑TGTGGGGTTTCGCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAg                                                                                       <  1:216049/149‑1 (MQ=255)                                                             cATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAg                                                                                       <  1:1240007/149‑1 (MQ=255)                                                                  cGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAAt                                                                                  <  1:1553985/149‑1 (MQ=255)                                                                  cGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGGCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATCAGAGTTATTTGCATGATGAAGGGagt                                                                                  >  1:756773/1‑147 (MQ=21)                                                                         aGAAGTGACACGCCGTAGCGCCAATGGTAG‑GGTGGGGTCTCCCCATGCGCGAGTAGGGACCTGCCGGGCATCAAATTAGAAACACCCCGGTCCATAAGGCCGGGGTTTTTCGCATACAAATTATTTGCAAGATGAAGGGAATCTCATGt                                                                           >  2:682157/1‑149 (MQ=255)                                                                         aGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGt                                                                           >  2:837100/1‑149 (MQ=255)                                                                          gAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTc                                                                          >  1:13161/1‑149 (MQ=255)                                                                           aaGTGGAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCa                                                                         <  2:98472/149‑1 (MQ=255)                                                                            aGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCGAGGCATCAAATTAGAAAAGCCCGGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGAATGCTGAAGGGAATCTCATGTCAg                                                                        >  2:525880/1‑149 (MQ=25)                                                                                caaCGCCGGAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAACCCCCGGTTCATTAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCt                                                                    <  1:400878/148‑1 (MQ=255)                                                                                aaaCGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCt                                                                    >  2:1054511/1‑149 (MQ=255)                                                                                aaaCGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGACAGGCATCAAGTTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCATTTATTTTCATGATGAAGGGAATCTCATGTACGTTCt                                                                    >  2:1371110/1‑149 (MQ=25)                                                                                 aaCGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCCGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGAATATCAATTATTTGCATGATGAAGGGACTCTCATGTCAGTTcgg                                                                   >  2:1265107/1‑147 (MQ=255)                                                                                  aCGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGt                                                                  >  1:120742/1‑149 (MQ=255)                                                                                   cGCCGTAGGGGCGATGGTAG‑TTTGGGGTTTCCCCATGCGAGAGTAGGGAACTTCCAGGCATCAAATTAGAAAAACCCCGGTCCATAATGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCCGTTTTGta                                                                 <  2:389841/149‑1 (MQ=37)                                                                                       gTAGCGCCGATGGTAG‑GGTGGGGTCGCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATc                                                             <  2:507537/149‑1 (MQ=255)                                                                                             ccGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTcc                                                                                                                                   <  2:457848/73‑1 (MQ=255)                                                                                             ccGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTcc                                                                                                                                   >  1:457848/1‑73 (MQ=255)                                                                                              cGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAGACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCAGGTCAGTGCTGTATATCCACATtc                                                      >  1:1356882/1‑149 (MQ=255)                                                                                              cGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAACCCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATtc                                                      <  1:284734/149‑1 (MQ=255)                                                                                                 tGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATtcgtc                                                   <  1:927648/149‑1 (MQ=255)                                                                                                 tGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATtcgtc                                                   <  1:837100/149‑1 (MQ=255)                                                                                                 tGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATAACTATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATtcgtc                                                   <  1:722224/149‑1 (MQ=255)                                                                                                     aG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTaa                                               <  1:240186/149‑1 (MQ=255)                                                                                                        tgtgGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCACGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATc                                             >  2:959665/1‑149 (MQ=255)                                                                                                          tgGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCaa                                           >  2:1031973/1‑149 (MQ=255)                                                                                                          tgGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAACGCAAACTCGTGTGAGTTCTGTATATCCAAATTCGTCGTAATCaa                                           >  1:446218/1‑149 (MQ=38)                                                                                                           ggggTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCaaa                                          >  2:1507831/1‑149 (MQ=255)                                                                                                                ctcCCCATGCAAAAGTAGGGAACTGCCAGGCAAAAAACTAGAAAAACCCCGGTCCAGAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCACATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACt                                     <  2:38802/149‑1 (MQ=255)                                                                                                                  ccccATGCGAGAGTAGGGCACTGCCAGGCATCAAATCAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCCCATGTCAGTGCTGCATATCCCACTCCGCCCTCATCCAATTACTGt                                   >  2:205561/1‑149 (MQ=255)                                                                                                                  ccccATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTCCATGATGAAGGGACTCTCATGTCAGTACTGTATAGCCACATTCGTCGTAGTCAAATTACTGt                                   <  2:1194467/149‑1 (MQ=39)                                                                                                                     cacgCGAGAGTGGGGACCCGCCAGGCATCAAACTAGAAAACCCCCGGTCCATAAGGCCGGGGTTTGTTGCATATCAATTACTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATGACTGTTcg                                <  1:778208/146‑1 (MQ=255)                                                                                                                         cGAGAGTAGGGAACTGCCAGTCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGAt                            <  1:1022402/149‑1 (MQ=255)                                                                                                                          gagaGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATACCCAAATTCGTCGTAATCAAATTACTGTTCGCGATc                           >  2:1022102/1‑149 (MQ=255)                                                                                                                               tAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGaa                      >  1:1076748/1‑149 (MQ=255)                                                                                                                                aGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGaaa                     <  1:421169/149‑1 (MQ=255)                                                                                                                                       tGCCAGGCATCAAATTAGAAAAACCCCGGTCCATACGGCCGGGGTTTTTTGCATATCACTTATTTGCATGATGAAGGGAATCTCATGTCAATTATGTCTATCCACATTCGTCGTAATCAAATTCCTGTTCGCGCTCTTGACAGCAAAcc              >  2:1071927/1‑148 (MQ=255)                                                                                                                                          cAGGCATCAAATTAGAAAACCCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGa           <  2:914260/149‑1 (MQ=255)                                                                                                                                          cAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGa           >  1:1208968/1‑149 (MQ=255)                                                                                                                                          cAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGa           >  1:270985/1‑149 (MQ=255)                                                                                                                                           aGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAAcataaa          >  2:1210799/1‑144 (MQ=255)                                                                                                                                           aGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGaa          >  2:1547852/1‑149 (MQ=255)                                                                                                                                           aGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGaa          <  2:13161/149‑1 (MQ=255)                                                                                                                                           aGGCACCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGaa          <  1:1234702/149‑1 (MQ=255)                                                                                                                                            ggCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAg         <  1:653838/149‑1 (MQ=255)                                                                                                                                             gCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAgt        <  1:1547852/149‑1 (MQ=255)                                                                                                                                                tCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCACGATGAATGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTc     >  1:231400/1‑149 (MQ=255)                                                                                                                                                 cAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCa    <  1:427908/149‑1 (MQ=255)                                                                                                                                                  aaaTGAGAAAGACCCCGGTCCATAAGGGTGGGGATTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCATTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCTATCTTGAAAGCAAACGTGAAGTGTCAg   <  2:704778/149‑1 (MQ=255)                                                                                                                                                   aaTTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAgg  >  1:744003/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     AAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG‑TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGG  >  NC_000913_3_pae_pgi/4213017‑4213310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.