New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 3037825	49 (0.820)	5 (0.080)	5/278	7.6	8.8%	coding (282/1734 nt)	recJ	ssDNA exonuclease, 5' ‑‑> 3'‑specific
	?	NC_000913_3_pae_pgi	= 3037851	54 (0.910)					coding (256/1734 nt)	recJ	ssDNA exonuclease, 5' ‑‑> 3'‑specific
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAGGAAATACCGTTATCCACCGTGACAATTAACTGCGCGCCACGGGCATGGGCCTGATCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAA  >  NC_000913_3_pae_pgi/3037682‑3037973                                                                                                                                                |                                                                                                                                                     gaggaAATACCGTTATCCACCGTGACAATTAACTGCGCGCCACGGGCATGGGCCTGATCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAg                                                                                                                                                 >  1:1049233/1‑149 (MQ=255) gaggaAATACCGTTATCCACCGTGACAATTAACTGCGCGCCACGGCCATGGGCCTGATCGACCACTTCCGGGCTTAAGACGTAACCGTCTTCGAAACGGTTTGGCACCAGGTAGTCGCTATTACTGCAACCAAGCGAGCGCCCCGCCAg                                                                                                                                                 >  2:302367/1‑149 (MQ=255)        tACCGTTATCCACCGTGACAATTAACTGCGCGCCACGGGCATGGGCCTGATCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCtt                                                                                                                                          <  2:987629/149‑1 (MQ=255)           cGTTATCCACCGTGACAATTAACTGCGCGCCACGGGCATGGGCCTGATCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTaga                                                                                                                                       >  1:479280/1‑149 (MQ=255)           cGTTATCCACCGTGACAATTAACTGCGCGCCACGGGCATGGGCCTGATCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCCAGCGCATCGCCAGCACGCTTaga                                                                                                                                       >  1:148679/1‑149 (MQ=255)           cGTTATCCACCGTGACAATTAACTGCGCGCCACCGGCATGGGCCTGATCGACCACTTCCGAGCTTAAGCCGTCACCGTCTTCGAAACGGTTTGGTACCAGGTAGCCGATATTCCTGCAACCCAGCGAGCGCACCGCCAGCCCGCTCaga                                                                                                                                       >  2:180389/1‑149 (MQ=255)            gTTATCCACCGTGACAATTAACTGCGCGCCACGGGCATGGGCCTGATCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTagag                                                                                                                                      <  2:393508/149‑1 (MQ=255)                       tGACAATTAACTGCGCGCCACGGGCATGGGCCTGATCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAGGCGAGCGCATCCCCCGCACGCTTAGAGCCGTCCTGGtg                                                                                                                           >  2:417611/1‑148 (MQ=255)                        gACAATTAACTGCGCGCCACGGGCATGGGCCTGATCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCACGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTcg                                                                                                                          >  2:935089/1‑149 (MQ=255)                           aaTTAACTGCGCGCCACGGGCATGGGCCTGATCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAAAGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCGGCACGCTTAGAGCCGGGCTGGTCgggc                                                                                                                       >  1:38685/1‑149 (MQ=255)                                         cACGCGCATGGGTCTGATCGACCACTTTCGGGCTTAAGCCGTAACCGTCTTCGAAAGGGTTTGGTACCAGGTAGTCGATATTGCTGCAGCCGAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGaaa                                                                                                         <  2:143314/149‑1 (MQ=255)                                          aCGGGCATGGGCCTGATCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAAt                                                                                                        <  1:302367/149‑1 (MQ=255)                                              gCATGGGCCTGAGCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCAcc                                                                                                    <  2:58741/149‑1 (MQ=255)                                                 tgtgCCTGATCGTCCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGAc                                                                                                 <  1:74162/146‑1 (MQ=255)                                                     ccTGATCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACcaca                                                                                             >  1:379694/1‑149 (MQ=255)                                                      cTGAGCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACaa                                                                                            <  2:479280/149‑1 (MQ=255)                                                           cGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTCGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATc                                                                                       <  1:903365/149‑1 (MQ=255)                                                            gACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATcc                                                                                      >  2:959861/1‑149 (MQ=255)                                                                aCTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGt                                                                                  <  1:657079/149‑1 (MQ=255)                                                                  ttCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTc                                                                                <  2:554479/149‑1 (MQ=255)                                                                        gCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTcgc                                                                          >  2:20288/1‑149 (MQ=255)                                                                            aaGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGaaa                                                                      <  1:88004/149‑1 (MQ=255)                                                                             aGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGaaaa                                                                     >  2:573441/1‑149 (MQ=255)                                                                                     ccGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTa                                                             >  1:887782/1‑149 (MQ=255)                                                                                       gTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCAGCAGCCAAGCGAGAGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTaaa                                                           >  2:910454/1‑149 (MQ=255)                                                                                        tCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAg                                                          >  2:880554/1‑149 (MQ=255)                                                                                          ttCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGa                                                        >  1:148775/1‑149 (MQ=255)                                                                                           tCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGAt                                                       <  1:880554/149‑1 (MQ=255)                                                                                            cGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGAtc                                                      <  1:619858/149‑1 (MQ=255)                                                                                              aaaCGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGAtctc                                                    >  1:40057/1‑149 (MQ=255)                                                                                                  ggTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACg                                                <  2:40057/149‑1 (MQ=255)                                                                                                         taacAGGTAGTCGATATTGCTGCAACCAAGCGGGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATTCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCtttt                                         <  2:979113/146‑1 (MQ=255)                                                                                                         tACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCtttt                                         <  2:379694/149‑1 (MQ=255)                                                                                                         tACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTACTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCtttt                                         >  1:12440/1‑149 (MQ=255)                                                                                                          aCCAGGTAGTCGAGATGGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGCGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAAGCCGCGTTCCTTCGCTAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTc                                        <  2:295842/149‑1 (MQ=255)                                                                                                            cAGGTAGTCGATATTGCTGCAACCACGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACTGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGa                                      <  1:1033270/149‑1 (MQ=255)                                                                                                             aGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGAc                                     >  2:17584/1‑149 (MQ=255)                                                                                                              ggTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTTAACGGCCTTTTCGAcg                                    <  2:148775/149‑1 (MQ=255)                                                                                                              ggTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGAcg                                    >  1:184126/1‑149 (MQ=255)                                                                                                              ggTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGAcg                                    >  1:296709/1‑149 (MQ=255)                                                                                                               gTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGAcgc                                   <  2:184126/149‑1 (MQ=255)                                                                                                                     gATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCa                             >  1:799563/1‑149 (MQ=255)                                                                                                                                  ccAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTGAGTTGCTGCCAggg                >  2:1036555/1‑149 (MQ=255)                                                                                                                                    aaGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGTAAATATCCGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGgca              <  1:1038732/149‑1 (MQ=255)                                                                                                                                          gcgcATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc        <  1:538485/149‑1 (MQ=255)                                                                                                                                              aTCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGtt                                                                >  2:378463/1‑89 (MQ=255)                                                                                                                                              aTCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGtt                                                                <  1:378463/89‑1 (MQ=255)                                                                                                                                              aTCGCCACCACGCTTATATCCGGTCTTGTCGCGCCCTCGGCTTCGAAAACACCGACCACAATCATCCCCGTTCGCTCGCGACAACTTTTGTAACGTATCTCATCGGCCTTTTCGACGCCGCTAAGTTGCTGCGAGGGCAGCATACCttt    <  2:1036300/149‑1 (MQ=255)                                                                                                                                               tCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTa   <  2:887782/149‑1 (MQ=255)                                                                                                                                                cGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTaa  <  1:980626/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                     GAGGAAATACCGTTATCCACCGTGACAATTAACTGCGCGCCACGGGCATGGGCCTGATCGACCACTTCCGGGCTTAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCACGCTTAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAA  >  NC_000913_3_pae_pgi/3037682‑3037973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.