Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_pae_pgi 3,440,077 Δ11 bp coding (943‑953/990 nt) rpoA ← RNA polymerase, alpha subunit

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_pae_pgi 3440077 3440087 11 70 [0] [0] 70 rpoA RNA polymerase, alpha subunit

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi = 34400760 (0.000)68 (1.160) 56/274 0.1 100% coding (954/990 nt) rpoA RNA polymerase, alpha subunit
?NC_000913_3_pae_pgi 3440088 = 0 (0.000)coding (942/990 nt) rpoA RNA polymerase, alpha subunit

ATAGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATGCCCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTGGATAGCTTCTGCTTTAAGGCAGTTAGCAGAGC  >  NC_000913_3_pae_pgi/3439941‑3440236
                                                                                                                                                   |                                                                                                                                                    
gattgcggaaaatagcctggcgatggctgctgttgcgtttcagttgacgaccactcttacgatggcgcatgaccttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCa                                                                                                                                                     <  2:174302‑M2/2‑1 (MQ=255)
         acatagcctggcgatggctgctgttgcggttcagttgacgaccactcttacgatggcgcatgaccttatccttctcagtaaaacccttacctttcataagcagccagggcagcgatgcttgccggtggccagttttccCAGAGACAGTc                                                                                                                                            <  1:780070‑M2/11‑1 (MQ=255)
              gcctggcgatggctgctgttgcggttcagttgacgaccactcttacgatggcgcatgaccttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACgg                                                                                                                                       <  1:375020‑M2/16‑1 (MQ=255)
                        ggctgctgttgcggttcagttgacgaccactcttacgatggcgcatgaccttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCa                                                                                                                             <  2:109548‑M2/26‑1 (MQ=255)
                         gctgctgttgcggttcagttgacgaccactcttacgatggcgcatgaccttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCAc                                                                                                                            >  1:962232‑M2/123‑149 (MQ=255)
                           tgctgttgcggttcagttgacgaccactcttacgatggcgcatgacgttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTGCACGGGAAGCCAGCACGt                                                                                                                          >  1:6707‑M2/121‑149 (MQ=255)
                                ttgcggttcagttgacgaccactcttacgatggcgcatgaccttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTa                                                                                                                     <  2:962232‑M2/34‑1 (MQ=255)
                                             gacgaccactcttacgatggcgcatgaccttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAagag                                                                                                        <  1:347777‑M2/47‑1 (MQ=255)
                                              acgaccactcttacgatggcgcatgaccttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCCCAGTAAgaga                                                                                                       >  1:50991‑M2/102‑149 (MQ=255)
                                                gaccacttgtacgatggcgcatgaccttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGAtt                                                                                                     <  2:767085‑M2/50‑1 (MQ=255)
                                                 accactcttacgatggtgcatgaccttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGAttt                                                                                                    <  2:837828‑M2/51‑1 (MQ=255)
                                                 accactcttacgatggcgcatgaccttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACgg                                                                                                                                       <  1:676249‑M2/16‑1 (MQ=255)
                                                 accactcttacgatggcgcatgaccttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACgg                                                                                                                                       >  2:676249‑M2/99‑114 (MQ=255)
                                                      tcttacgatggcgcatgaccttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCa                                                                                                               <  2:973894‑M2/40‑1 (MQ=255)
                                                      tcttacgatggcgcatgaccttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCa                                                                                                               >  1:973894‑M2/94‑133 (MQ=255)
                                                       cttacgatggcgcatgaccttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAg                                                                                                                               <  2:678834‑M2/24‑1 (MQ=255)
                                                       cttacgatggcgcatgaccttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAg                                                                                                                               >  1:678834‑M2/93‑116 (MQ=255)
                                                          acgatggcgcatgaccttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTa                                                                                                <  2:859417‑M2/55‑1 (MQ=255)
                                                          acgatggcgcatgaccttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTa                                                                                                >  1:859417‑M2/90‑144 (MQ=255)
                                                            gatggcgcatgaccttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGGCTTTAATCTCAGTAAGAGGTTTTTTACCAAGGt                                                                                         >  1:348830‑M2/88‑149 (MQ=255)
                                                            gatggcgcatgaccttatccttctaagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACTGGAAGCCAGCACGTCTTTAATCTCAGTGAGAGCTTTTTTGCCAAGGt                                                                                         >  2:192093‑M2/88‑149 (MQ=255)
                                                            gatggcgcaagaccttatccttctcagtaaaaccttcacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGTCAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGt                                                                                         <  1:301610‑M2/62‑1 (MQ=255)
                                                             atggcgcatgaccttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACTGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCCAGGtt                                                                                        >  2:480024‑M2/87‑149 (MQ=255)
                                                                         cttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAg                                                                            >  1:994677‑M2/75‑149 (MQ=255)
                                                                          ttatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAgg                                                                           >  1:316713‑M2/74‑149 (MQ=255)
                                                                           tatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCa                                                                                                               >  1:33370‑M2/73‑112 (MQ=255)
                                                                           tatccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCa                                                                                                               <  2:33370‑M2/40‑1 (MQ=255)
                                                                           tacccttctcagtaagactttaacctgtgatccggttactcattagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGa                                                                          <  2:576621‑M2/77‑1 (MQ=255)
                                                                             tccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggaagccagctttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGgcgc                                                                        >  1:420371‑M2/71‑149 (MQ=255)
                                                                              ccttctcagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCt                                                                       >  2:901654‑M2/70‑149 (MQ=255)
                                                                                    cagtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCt                                                                 <  1:604359‑M2/86‑1 (MQ=255)
                                                                                     agtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGAAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTc                                                                >  1:718423‑M2/63‑149 (MQ=255)
                                                                                      gtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGTCAGCACGTCTTTAAtct                                                                                                                 >  1:752334‑M2/62‑99 (MQ=255)
                                                                                      gtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGTCAGCACGTCTTTAAtct                                                                                                                 <  2:752334‑M2/38‑1 (MQ=255)
                                                                                      gtaaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCg                                                               <  1:901654‑M2/88‑1 (MQ=255)
                                                                                       taaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAg                                                                         >  1:829156‑M2/61‑138 (MQ=255)
                                                                                       taaaaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAg                                                                         <  2:829156‑M2/78‑1 (MQ=255)
                                                                                          aaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAg                                                                            >  2:42209‑M2/58‑132 (MQ=255)
                                                                                          aaccttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAg                                                                            <  1:42209‑M2/75‑1 (MQ=255)
                                                                                              ttaacctgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTg                                                       >  1:1036598‑M2/54‑149 (MQ=255)
                                                                                                    tgtgatccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAg                                                 >  1:380308‑M2/48‑149 (MQ=255)
                                                                                                        atccggttactcgtcagcgatgcttgccggtggccagctttccCAGAGACAGTCCACGAAAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCa                                             >  1:334325‑M2/44‑149 (MQ=255)
                                                                                                          ccggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTACCATCTTCTCAACCTCGGTACGCTGTACCAGATCAcc                                           <  1:1039524‑M2/108‑1 (MQ=255)
                                                                                                            ggttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGa                                         <  1:162393‑M2/110‑1 (MQ=255)
                                                                                                             gttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAg                                                                            <  1:992173‑M2/75‑1 (MQ=255)
                                                                                                             gttactcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAg                                                                            >  2:992173‑M2/39‑113 (MQ=255)
                                                                                                                actcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGAtata                                     <  2:994677‑M2/114‑1 (MQ=255)
                                                                                                                actcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTACACATGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGAtata                                     <  1:1027148‑M2/114‑1 (MQ=255)
                                                                                                                  tcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGt                                   >  2:438208‑M2/34‑149 (MQ=255)
                                                                                                                  tcgtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGt                                   >  1:537986‑M2/34‑149 (MQ=255)
                                                                                                                  tcgtcagcgatgcttgccggtggccagttttccCAGAGACAGGCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGt                                   <  1:382833‑M2/116‑1 (MQ=255)
                                                                                                                    gtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTgg                                 >  2:716448‑M2/32‑149 (MQ=255)
                                                                                                                    gtcagcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTgg                                 >  2:185259‑M2/32‑149 (MQ=255)
                                                                                                                       agcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGGGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTTTACCAGATGACCGATAGAGTGGatg                              >  1:37655‑M2/29‑148 (MQ=255)
                                                                                                                       agcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTGGATa                              <  1:438208‑M2/121‑1 (MQ=255)
                                                                                                                       agcgacgcttgccggttgcaagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTGGATa                              <  2:6707‑M2/121‑1 (MQ=255)
                                                                                                                        gcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGCGCTAACCCTCGGTACGCTGTACCAGATCACCGATATAGTGGATAg                             >  1:725487‑M2/28‑149 (MQ=255)
                                                                                                                        gcgatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTGGATAg                             >  1:936504‑M2/28‑149 (MQ=255)
                                                                                                                          gatgcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTGGATAGCt                           <  2:380308‑M2/124‑1 (MQ=255)
                                                                                                                             gcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGa                                                <  2:348960‑M2/103‑1 (MQ=255)
                                                                                                                             gcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGa                                                >  1:348960‑M2/23‑125 (MQ=255)
                                                                                                                             gcttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTGGATAGCTTCt                        >  1:975549‑M2/23‑149 (MQ=255)
                                                                                                                              cgtgccggtggccagttttctCACAGACAGTCAACGGGAAGCCAGCATGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTGGATAGCTTCTg                       <  1:889863‑M2/128‑1 (MQ=255)
                                                                                                                               ttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTGGATCGCTTCTGc                      >  2:387234‑M2/21‑149 (MQ=255)
                                                                                                                               ttgccggtggccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTGGATAGCTTCTGc                      >  2:926913‑M2/21‑149 (MQ=255)
                                                                                                                                        gccagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTGGATAGCTTCTGCTTTAAGGCa             <  2:537986‑M2/138‑1 (MQ=255)
                                                                                                                                          cagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTGGATAGCTTCTGCTTTAAGGCAGt           >  2:202728‑M2/10‑149 (MQ=255)
                                                                                                                                          cagttttccCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTGGATAGCTTCTGCTTTAAGGCAGt           >  2:599157‑M2/10‑149 (MQ=255)
                                                                                                                                                   cAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCACGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTAAGCTGTACCAGCTCACCGATATAGTGGATAGCTTCTGCTTTAAGGCAGTTACCAGAGc  >  2:562141/1‑149 (MQ=255)
                                                                                                                                                   cAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTGGATAGCTTCTGCTTTAAGGCAGTTAGCAGAGc  >  2:407883/1‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
ATAGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATGCCCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTGGATAGCTTCTGCTTTAAGGCAGTTAGCAGAGC  >  NC_000913_3_pae_pgi/3439941‑3440236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.