New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	1207790 =	44 (0.990)	8 (0.200)	8/246	3.9	18.0%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913_3_pae_pgi	1209619 =	34 (0.860)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑ACGCGTATCAACAAATGACCAGAACACAGA‑TCTACAACGTAATGCGCTGAACTGTGCAGGATGCGA  >  NC_000913_3_pae_pgi/1209477‑1209767                                                                                                                                               |                                                                                                                                                       gTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAt                                                                                                                                                  <  1:409353/149‑1 (MQ=255)          gCCTTTGCCAGTTCTGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa                                                                                                                                         <  2:773564/149‑1 (MQ=255)               ggCCAGTTCCGGTTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAAt                                                                                                                                    <  2:314940/148‑1 (MQ=255)                 ccAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATaa                                                                                                                                  >  1:232678/1‑149 (MQ=255)                    gTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGTTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa                                                                                                                               <  2:731247/149‑1 (MQ=255)                     tgccGGGTATTCTTCAGCCGCAACAGCGGAACCGCTACCTTTCAGCCAGCCTGTTCGTGGGGGCGCATATTGCGAGGGATCCGGGAGGCCATCAGGTAATGCAGATCCTTGTCCCTAACCAACGTTTATGAAAATGAAGAAATAACAAg                                                                                                                              <  2:659679/147‑1 (MQ=255)                              ttcttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAAGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAAAAACAACAAGCAAATGGca                                                                                                                     >  1:699633/1‑149 (MQ=255)                                 ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca                                                                                                                  >  1:234262/1‑149 (MQ=255)                                       gtaaaaaGCGGAACCATTGCATTCCAGCCAGCCGGTTGGAGGAGGGTCTAAAGGCCACGGAACCGGGACACAAACAGGTAATGCAGAGCCGTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTg                                                                                                            <  2:116630/147‑1 (MQ=255)                                         aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt                                                                                                          >  2:473977/1‑149 (MQ=255)                                         aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt                                                                                                          >  2:474205/1‑149 (MQ=255)                                          aaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt                                                                                                         >  1:498862/1‑149 (MQ=255)                                                   aCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg                                                                                                <  2:227147/149‑1 (MQ=255)                                                            tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGttt                                                                                                                                                    >  2:721216/1‑88 (MQ=255)                                                            tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGttt                                                                                                                                                    <  1:721216/88‑1 (MQ=255)                                                                agccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGc                                                                                   <  2:232678/149‑1 (MQ=255)                                                                 gccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCt                                                                                  >  2:520008/1‑149 (MQ=255)                                                                       cTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg                                                                            <  2:380507/149‑1 (MQ=255)                                                                              cGGGGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCGACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑a                                                                    <  2:407139/149‑1 (MQ=255)                                                                               ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑Ac                                                                   <  1:565436/149‑1 (MQ=255)                                                                                 aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑Acgc                                                                 <  1:520008/149‑1 (MQ=255)                                                                                     gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑ACGCGTAt                                                             <  1:474205/149‑1 (MQ=255)                                                                                     gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑ACGCGTAt                                                             <  1:473977/149‑1 (MQ=255)                                                                                         aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑ACGCGTATcaac                                                         <  1:92598/149‑1 (MQ=255)                                                                                           ggCCACGGAACCGGGACACCAACAGGCAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑ACGCGTATcaacaa                                                       <  1:436471/149‑1 (MQ=255)                                                                                              cACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTCATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑ACGCGTATCAACAAATg                                                    >  1:520792/1‑149 (MQ=255)                                                                                                 ggAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑ACGCGTATCAACAAATGAcc                                                 <  1:212991/149‑1 (MQ=255)                                                                                                              cAACAGGTAATGCAGAGCCTTCTCTCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑ACGCGTATCAACAAATGACCAGAACACAGA‑TCt                                   >  1:682398/1‑149 (MQ=255)                                                                                                                    gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑ACGCGTATCAACAAATGACCAGAACACAGA‑TCTACAACg                             >  1:43619/1‑149 (MQ=255)                                                                                                                     tAATGCAGAGCCTTCTCTCAAACCAATGTTTATTAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑ACGCGTATCAACAAATGACCAGAACACAGA‑TCTACAACGt                            <  2:654825/149‑1 (MQ=255)                                                                                                                      aaTGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑ACGCGTATCAACAAATGACCAGaa                                             >  2:539703/1‑132 (MQ=255)                                                                                                                      aaTGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑ACGCGTATCAACAAATGACCAGaa                                             <  1:539703/132‑1 (MQ=255)                                                                                                                           agagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑ACGCGTATCAACAAATGACCAGAacac                                          >  1:229441/1‑130 (MQ=255)                                                                                                                           agagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑ACGCGTATCAACAAATGACCAGAacac                                          <  2:229441/130‑1 (MQ=255)                                                                                                                                 ttCTCCCAAACCAACGTTTATGAAAATGAAGAATTAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAGTTAACATGCTTATTGGCTATGT‑ACGGGTATCAACAAATGAACAGTACA‑AGAGACTACAAAGTAATGAGGTGagc                >  2:208007/1‑147 (MQ=255)                                                                                                                                      ccAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑ACGCGTATCAACAAATGACCAGAACACAGA‑TCTACAACGTAATGCGCTGAACTGTGc           >  2:579082/1‑149 (MQ=255)                                                                                                                                      ccAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAAAAGGGGGATTTACCATGCTTATTGGCTATGTGTCAAGT‑TCAACAAGTGACCAGAACACAGA‑TCTACAACGTAATGCGCTGAACGGTGc           >  1:349767/1‑149 (MQ=255)                                                                                                                                         aaCCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑ACGCGTATCAACAAATGACCAGAACACAGA‑TCTACAACGTAATGCGCTGAACTGTGCAgg        <  2:520792/149‑1 (MQ=255)                                                                                                                                          aCCCACGTGTATGAAAATGAAGAAATAACAAGCAAATGGCATTATTCCTGCTTGTACCAGGGCGAAACACAATCCTCGTCAGCTATTT‑AGGTGTATCAACAAATCACCAGAACACAGA‑TCTACAACGTAATGCGCTGAACTGTGCAGGa       <  2:219/149‑1 (MQ=255)                                                                                                                                           ccAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑ACGCGTATCAACAAATGACCAGAACACAGA‑TCTACATAGTAATGCGCTGAACTGTGCAGGAt      >  1:469568/1‑149 (MQ=255)                                                                                                                                           ccAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑ACGCGTATCAACAAATGACCAGAACACAGA‑TCTACAACGTAATGCGCTGAACTGTGCAGGAt      >  1:569568/1‑149 (MQ=255)                                                                                                                                               cGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑ACGCGTATCAACAAATGACCAGAACACAGA‑TCTACAACGTAATGCGCTGAACTGTGCAGGATGCGa  >  1:603187/1‑149 (MQ=255)                                                                                                                                               cGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑ACGCGTATCAAAAAATGACCAGAACACAGA‑TCTACAACGTAATGCGCTGAACTGTGCAGGATGCGa  <  1:741626/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                       GTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT‑ACGCGTATCAACAAATGACCAGAACACAGA‑TCTACAACGTAATGCGCTGAACTGTGCAGGATGCGA  >  NC_000913_3_pae_pgi/1209477‑1209767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.