Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_vch_pgi 2,393,422 Δ13 bp coding (1613‑1625/1842 nt) nuoL ← NADH:ubiquinone oxidoreductase, membrane subunit L

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_vch_pgi 2393422 2393434 13 26 [0] [0] 26 nuoL NADH:ubiquinone oxidoreductase, membrane subunit L

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_vch_pgi = 23934210 (0.000)26 (0.830) 24/286 0.4 100% coding (1626/1842 nt) nuoL NADH:ubiquinone oxidoreductase, membrane subunit L
?NC_000913_3_vch_pgi 2393435 = 0 (0.000)coding (1612/1842 nt) nuoL NADH:ubiquinone oxidoreductase, membrane subunit L

CAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATT  >  NC_000913_3_vch_pgi/2393274‑2393565
                                                                                                                                                   |                                                                                                                                                
cAGATAGCCGTTCTCACTTAACAGCATACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGc                                                                                                                                                 <  2:300878‑M1/149‑2 (MQ=255)
              cccttAATAGCAGACCTTTTCCTGCAAAGCGGGAAAGGACAGCCGGGATGTTAATCGGCAAGCCCGGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccagg                                                                                                                                   <  1:128509‑M1/147‑16 (MQ=255)
                   aaCAGCAGCCCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgccc                                                                                                                              <  1:361464‑M1/149‑21 (MQ=255)
                             cTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCACTACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtacccccacgtgcccagcagacggc                                                                                                                    >  1:130368‑M1/1‑119 (MQ=255)
                                            gggAAAAGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttgg                                                                                                     <  2:537052‑M1/149‑46 (MQ=255)
                                                 aGGACAGTCGGGGGGTGCATCATTGAGTTCAGCGGATCGCGTTTCACCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatg                                                                                                <  2:161932‑M1/149‑51 (MQ=255)
                                                  ggACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatgg                                                                                               <  2:426215‑M1/149‑52 (MQ=255)
                                                    aaagcCGGGATGGTCATCATTGAGTTCAGCGGATCGGGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggag                                                                                             <  2:407188‑M1/147‑54 (MQ=255)
                                                    aCAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgtccagcagacggcccggcgcactgttggcgatggag                                                                                             <  1:273361‑M1/149‑54 (MQ=255)
                                                    aCAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggag                                                                                             <  1:83474‑M1/149‑54 (MQ=255)
                                                             aggttCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccaga                                                                                    <  1:185891‑M1/147‑63 (MQ=255)
                                                                   atcatTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgt                                                                              <  1:499588‑M1/149‑69 (MQ=255)
                                                                               aGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggccaggcgcactgttggcgctgggggtcaccagagtacgtttacccaggcac                                                                  >  2:385685‑M1/1‑69 (MQ=255)
                                                                                     tCGCGTTTCACCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccag                                                            <  1:385685‑M1/149‑87 (MQ=255)
                                                                                             cAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccag                                                    >  1:308209‑M1/1‑55 (MQ=255)
                                                                                                       gCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgccg                                          <  1:325238‑M1/149‑105 (MQ=255)
                                                                                                        cAATACCCTGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgtactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgccga                                         <  2:405473‑M1/149‑106 (MQ=255)
                                                                                                           tACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggacaccagcagactgcccggcacactgtttgcgatggagggcaccagagtacgtttacccagccacagccgggctgccagcataatgacgacca                                      >  1:47914‑M1/1‑41 (MQ=255)
                                                                                                               cAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtac                                                                                                                                          >  1:61232‑M1/1‑37 (MQ=255)
                                                                                                               cAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtac                                                                                                                                          <  2:61232‑M1/45‑9 (MQ=255)
                                                                                                                 ggAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgccgaccaccgcga                                <  1:12860‑M1/149‑115 (MQ=255)
                                                                                                                           gACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgccgaccaccgcgaccacgccaga                      >  1:317039‑M1/1‑25 (MQ=255)
                                                                                                                                acacTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccagccggacagcagaatgccgaccaccgcgaccacgcccgagctaa                 >  2:301982‑M1/1‑20 (MQ=255)
                                                                                                                                    tttGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctcccagcagaatgccgaccaccgcgaccacgcaagagcgaatttc             >  2:337007‑M1/1‑16 (MQ=255)
                                                                                                                                       gTCATACAGCCAGcgttgtacgaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgccgaccaccgcgaccacgccagaggtaatttccag          <  2:130368‑M1/149‑137 (MQ=255)
                                                                                                                                               gccagcgttgtacccccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgccgaccaccgcgaccacgccagaggtaatttccagggtcaaca  <  1:72244‑M1/149‑145 (MQ=255)
                                                                                                                                                   |                                                                                                                                                
CAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATT  >  NC_000913_3_vch_pgi/2393274‑2393565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.