New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_vch_pgi 1027524 =29 (0.920)4 (0.130) 4/278 4.1 12.5% coding (250/663 nt) yccT UPF0319 family protein
?NC_000913_3_vch_pgi 1027537 = 28 (0.920)coding (237/663 nt) yccT UPF0319 family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACCGGAATCGGCGTCGCATCGCCATCCAACAATTCAAGGCGCGGCGCGGCATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATGCTGTCCGCACCGCGCAGCAGAGAGCTGGAAACCTTCTTGCCGTCGAGTACCAGAAGA  >  NC_000913_3_vch_pgi/1027391‑1027684
                                                                                                                                                  |                                                                                                                                                   
aCCGGAATCGTCGGCGCATCGCCATCCAACAATTCAAGGCGCGGCGCGGCATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGga                                                                                                                                                   <  2:392686/149‑1 (MQ=255)
   ggAATCGGCGTCGCATCGTCATCCAACAATTCAAGGCGCGGCGCGGCATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCCCCAGCGGTGGGGAGat                                                                                                                                                >  1:139665/1‑149 (MQ=255)
        ctgCGTCGCATCGCCATCCAACAATTCTATGAGCGGCGCGGTATCAAAATGGTTAGCTTCGCGCTCATTCTCCAGGCGAGCCAGGCGAAACTTGACCTTGTTGATGAGCAGGGTATTAAAACCGACTACCAGCTGCGGGGAGATATACa                                                                                                                                           <  1:455507/147‑1 (MQ=255)
                   cgtcATCCAACAATTCAAGGCGCGGCGCGGCATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCa                                                                                                                                <  2:139665/146‑1 (MQ=255)
                       aTCCAACAATTCAAGGCGCGGCGCGGCATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTAt                                                                                                                            >  1:530636/1‑149 (MQ=255)
                           aacaaTTCAAGGCGCGGCGCGGCATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGa                                                                                                                        >  1:144743/1‑149 (MQ=255)
                                     gggccggcgcggcATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGAGGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATc                                                                                                              <  2:84107/145‑1 (MQ=255)
                                     ggcgcggcgcGGCATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATc                                                                                                              <  1:184612/149‑1 (MQ=255)
                                               ggcATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCaa                                                                                                    <  1:116474/149‑1 (MQ=255)
                                                 cATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAAcg                                                                                                  >  1:24409/1‑149 (MQ=255)
                                                     aaaaTGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATGCAGCCGTTCTTCACTCTTGGAAAGATGAATCGTCTTCTCAACGCGaa                                                                                              >  2:376851/1‑149 (MQ=255)
                                                      aaaTGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGaaa                                                                                             >  2:204569/1‑149 (MQ=255)
                                                        aTGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAaca                                                                                           <  1:383961/149‑1 (MQ=255)
                                                            ttAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTaa                                                                                       <  1:179633/149‑1 (MQ=255)
                                                                    ccGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCg                                                                               <  1:105110/149‑1 (MQ=255)
                                                                            tcttCAGGCGAGCCAGGCGAAAGTTGTCCTGGATGTGGAGCTGGGTATTAAAACGGACCACCAGCGGTGCGGAGATATACCGCCCTTCTTCCCTTCTCGGAAGATGAATCTTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTa                                                                       <  2:507559/149‑1 (MQ=255)
                                                                            tctcCAGGGGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGTGTATTAAAACTGACCACCAGCGGTGGGGAGATATACCGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCACCGCGACACCCTAACCGATGCGGTCCAttc                                                                       <  2:490459/149‑2 (MQ=255)
                                                                            tctcCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTa                                                                       <  2:451215/149‑1 (MQ=255)
                                                                               ccAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATcc                                                                    <  2:335153/149‑1 (MQ=255)
                                                                                   gCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGtt                                                                >  1:506651/1‑149 (MQ=255)
                                                                                   gCGAGGCAGGCGAAAATTGACCTAGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGtt                                                                <  1:51444/149‑1 (MQ=255)
                                                                                        gcaggcGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATg                                                           <  1:202240/149‑1 (MQ=255)
                                                                                                  aTTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATGCTGTCCGCAc                                                 <  1:204569/149‑1 (MQ=255)
                                                                                                      aCCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGCTATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTAATGCGGCCCATTATCAAGTTCAATGCTGTCCGCACcgcg                                             >  2:163636/1‑149 (MQ=255)
                                                                                                        cTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATGCTGTCCCCACCGCgca                                           >  2:494402/1‑149 (MQ=255)
                                                                                                                            tAAAACCGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATGCTGTCCGCACCGCGCAGCAGAGAGCTGGAAACcttc                       <  1:190354/149‑1 (MQ=255)
                                                                                                                              aaatgtcccaccaGCGGTGTGGAGATATCTAGCCGTTCTTCACTATTGTAAAGATGATTCGTCTCCTCAACGCGAAACACTAACGGTTGCGGTCCATTAGCCAGTTCAATGCTGTCCTCACCGCGCAGCAGAGAGCTGGAAACcttctt                     <  1:33786/142‑1 (MQ=255)
                                                                                                                                    accaccAGCGGAGGGTAGATTAACAGCCGTACTTCACTATTAGAAAGATGAAACATCTTCTCAACGCGAAACTCTAACTGATCCGGTCCATTACCCAGTTCACCGCTTTCCGCACCGCTTAGCAGAGAGCTGGAAACCTTCTTGCCGTc               <  2:14059/149‑1 (MQ=255)
                                                                                                                                      caccaGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATGCTGTCCGCACCGCGCAGCAGAGAGCTGGAAACCTTCTTGCCGTCGa             >  1:131905/1‑149 (MQ=255)
                                                                                                                                                 gggAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATGCTGTCCGCACCGCGCAGCAGAGAGCTGGAAACCTTCTTGCCGTCGAGTACCagaaga  >  2:306193/1‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
ACCGGAATCGGCGTCGCATCGCCATCCAACAATTCAAGGCGCGGCGCGGCATCAAAATGGTTAGCTTCCCGCTCATTCTCCAGGCGAGGCAGGCGAAAATTGACCTGGTTGATGAGCTGGGTATTAAAACTGACCACCAGCGGTGGGGAGATATACAGCCGTTCTTCACTATTGGAAAGATGAATCGTCTTCTCAACGCGAAACACTAACTGATGCGGTCCATTATCCAGTTCAATGCTGTCCGCACCGCGCAGCAGAGAGCTGGAAACCTTCTTGCCGTCGAGTACCAGAAGA  >  NC_000913_3_vch_pgi/1027391‑1027684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.