| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | 1207790 = | 3 (0.090) | 34 (1.210) | 32/256 | 0.0 | 86.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_vch_pgi | 1209619 = | 8 (0.280) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
TTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGA > NC_000913_3_vch_pgi/1209471‑1209767 | ccagaggcagatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaac > 2:487089‑M2/149‑149 (MQ=255) ggcagatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatggagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTa < 1:435034‑M2/6‑1 (MQ=255) ttcttttgcggcatgccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaaaa < 2:226965‑M2/12‑1 (MQ=255) aTAAGCCGTTGATAGTGCCGGGTATCTGTCAGAAGAAAAAGGGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCCCGGAACCGTGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaaa < 2:231003/149‑1 (MQ=255) tttgcggcattctacccccactgaatgattatcgattgctcaataccacctatcataaccagtatagctatgaaacctgtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaa < 1:41736‑M2/16‑1 (MQ=255) gTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa < 1:124762/149‑1 (MQ=255) ccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAg < 1:240867‑M2/27‑1 (MQ=255) ccccactgaatgattactgattgctcaataccaccaatcataaccggcaaagcttggaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAAGAAGAAAAAACAAGCaaa > 1:108371‑M2/119‑149 (MQ=255) ggTATGCTTCAGCAGAAAAAGCGGCGCCATTGCATTTCAGCCAGCCTGGTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGGTTATGAAAATGAAGAAATAACAAGCAAAt < 2:204563/149‑1 (MQ=255) ccaccgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATg < 1:182899‑M2/33‑1 (MQ=255) tgaaagattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgcgttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcat > 2:422267‑M2/113‑149 (MQ=255) aatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccagCGTTTATGAAAATGAAGAAATAACAAGCAAATggcatga > 1:255386‑M2/111‑147 (MQ=255) agcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc < 2:318460/149‑1 (MQ=255) ttacggattgctcaatcccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt < 2:344812‑M2/44‑1 (MQ=255) aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATTCAGAGCCTTCTCCCAAATCAACGTTTATGAAAGTGAAGAAATAACAAGCAAATGGCATCATTCGTGCttt > 1:512623/1‑149 (MQ=255) ttgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCACCATTCCTGCTTTTa > 2:460579‑M2/99‑149 (MQ=255) ctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtccctttcgatccattgctgcattgaggtttgctccttctcccaaaccaaCGTCTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCa < 1:105255‑M2/54‑1 (MQ=255) cACCATTGCAGTTCAGCCAGCCTGTTGGCGGAGTGGATGAATGCCACGTAACCGGCACACCAAAAGGTAATGCAGAGCCTTCTCCCAAACCAACGTCTATGAAAATGAAGAAATAACAAGCAAATGGCATCATGCCTGCTTTTACCAgg < 2:268813/149‑1 (MQ=255) aataccactaatcataaccaggatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg < 1:188248‑M2/57‑1 (MQ=255) aataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg < 2:13598‑M2/57‑1 (MQ=255) ataccaccaatcaaaaccgggatagctatgaaacccgtgcgtcctaatgtagacgttgctgcattgagttttgctccttctcccaaacaccAGTTTATGAAAATGAAGACATAACCAGCAAATGGCATTATTCCTGCTTTTACCAgggg < 2:272393‑M2/58‑1 (MQ=255) taccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCATGCTTTTACcagggag > 2:523033‑M2/91‑147 (MQ=255) accaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa > 1:4058‑M2/90‑149 (MQ=255) accaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt > 1:2633‑M2/87‑149 (MQ=255) tCAGGCAGCGTGTTGGCGGAGTTGATGCACGTCAAGGACCCGGAAGATCAACAGGTAGTGCAGAGGTTTCTCCCCACCCATTGTTTATGAAAAGGAAGAAGTAACATGCAAATGGCATCATTCCTGCTTTTACCAGGTGGATTTAAccg < 2:342717/149‑3 (MQ=255) aaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCtt > 1:418953‑M2/78‑149 (MQ=255) accggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCGTTACTGCGTTTAGCAGGGGGATTTAACGTACTTa > 1:5817‑M2/77‑149 (MQ=255) cggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAtt > 2:79950‑M2/75‑149 (MQ=255) ctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGt > 2:529692‑M2/67‑149 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGACATCATACCTGCTTTTACCAGGGGAATTTAAACTGCTTATTGTCTAGGTa > 2:490016‑M2/66‑149 (MQ=255) atgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAc < 1:529692‑M2/85‑1 (MQ=255) ccggtgcgtcccaatgtagccgctgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCATATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAt < 1:47776‑M2/91‑1 (MQ=255) tcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt > 1:24247‑M2/51‑149 (MQ=255) gccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAaca > 2:56197‑M2/41‑149 (MQ=255) gccgttgctgcattgagttttgctccttctcacaaaccaaCGTTTATGAAAATGAAGAAATAACAAGAAAATGGCATCATTCCTGCTTTTAACAGGGGGATTTAAAATGCTTATTCGCTGTGTACGAGTAGCAACaactgaccggtact > 2:277995‑M2/41‑143 (MQ=255) ctgcattgagttttgctccttatccccaacccaCGTTTATTAACATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTCTGTCCGCGTATCAACAAATGACCAGAACACAGATCt < 1:69071‑M2/116‑1 (MQ=255) cAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACATAGATCTACa < 2:67188/149‑1 (MQ=255) tttgctccctctcccaaaccaaCGGTTATGAAAATGAAGAAACAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGTGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAACGACCACAACCCAGATCTACACCGTAATg < 2:75597‑M2/127‑1 (MQ=255) ttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCCGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgc > 1:434226‑M2/22‑149 (MQ=255) tgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgcg < 1:487089‑M2/129‑1 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTCTTCGCAGAGGACCAGAACACAGATCTACAACGTAATGCGCt < 1:548762‑M2/131‑1 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAAATCTACAACGTAATGCCCt > 2:1094‑M2/19‑149 (MQ=255) cttctcccaatccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATGCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa < 2:85191‑M2/134‑1 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa < 1:79950‑M2/134‑1 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa > 1:462227‑M2/16‑149 (MQ=255) tctcCAAAACCAACGTTTCTGAAAATGAAGAAATAACAAGCAAATGGTATCATTCCTGCTTTTACCAGGGGGATTTAACTTGCTTATTGGCTATGTACGCGTATCGACAAATGACCAGAACACGGATCTACAACGTAATGCGCTGAACt < 1:422267/149‑1 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGc > 2:431532‑M2/10‑149 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGc > 2:362981‑M2/10‑149 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAAAGCGCTGAACTGTGc > 2:45387‑M2/10‑149 (MQ=255) ccaaCATTTATGAAAATGAAGAAATAACAAGCAAAGGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGAt < 2:374335‑M2/145‑1 (MQ=255) caaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATg > 1:303065‑M2/4‑149 (MQ=255) caaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATg > 1:168746‑M2/4‑149 (MQ=255) aaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGc > 1:142275‑M2/3‑149 (MQ=255) aaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGATTTTACCTGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGAGGc > 1:436769‑M2/3‑149 (MQ=255) cGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGa < 1:181855/149‑1 (MQ=255) | TTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGA > NC_000913_3_vch_pgi/1209471‑1209767 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |